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Journal of Biomolecular Structure and Dynamics Volume 39, 2021 - Issue 4
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Research Articles

Extensive immunoinformatics study for the prediction of novel peptide-based epitope vaccine with docking confirmation against envelope protein of Chikungunya virus: a computational biology approach

Syed Shahariar Bappya Department of Biotechnology and Genetic Engineering, Mawlana Bhashani Science and Technology University, Tangail, Bangladesh
,
Sorna Sultanaa Department of Biotechnology and Genetic Engineering, Mawlana Bhashani Science and Technology University, Tangail, Bangladesh
,
Juthi Adhikaria Department of Biotechnology and Genetic Engineering, Mawlana Bhashani Science and Technology University, Tangail, Bangladesh
,
Shafi Mahmudb Department of Genetic Engineering and Biotechnology, University of Rajshahi, Rajshahi, BangladeshORCID Iconhttps://orcid.org/0000-0003-1604-8626
ORCID Icon,
Md. Arif Khanc Department of Biotechnology and Genetic Engineering, University of Development Alternative, Dhaka, Bangladesh;d Bio-Bio-1 Research Foundation, Sangskriti Bikash Kendra Bhaban, Dhaka, BangladeshCorrespondence[email protected]
,
K. M. Kaderi Kibriaa Department of Biotechnology and Genetic Engineering, Mawlana Bhashani Science and Technology University, Tangail, Bangladesh
,
Md. Masuder Rahmana Department of Biotechnology and Genetic Engineering, Mawlana Bhashani Science and Technology University, Tangail, BangladeshCorrespondence[email protected]
&
Abu Zaffar Shiblya Department of Biotechnology and Genetic Engineering, Mawlana Bhashani Science and Technology University, Tangail, BangladeshCorrespondence[email protected]
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Pages 1139-1154 | Received 20 Nov 2019, Accepted 03 Feb 2020, Published online: 24 Feb 2020

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Guneswar Sethi, Rinku Polachirakkal Varghese & Ramadas Krishna. (2022) Identification and design of a multi-epitope subunit vaccine against the opportunistic pathogen Staphylococcus epidermidis: An immunoinformatics approach. Journal of Biomolecular Structure and Dynamics 40:24, pages 13859-13871.
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Md. Muzahid Ahmed Ezaj, Md. Junaid, Yeasmin Akter, Afsana Nahrin, Aysha Siddika, Syeda Samira Afrose, S. M. Abdul Nayeem, Md. Sajedul Haque, Mohammad Ali Moni & S. M. Zahid Hosen. (2022) Whole proteome screening and identification of potential epitopes of SARS-CoV-2 for vaccine design-an immunoinformatic, molecular docking and molecular dynamics simulation accelerated robust strategy. Journal of Biomolecular Structure and Dynamics 40:14, pages 6477-6502.
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Md. Arif Khan, Shafi Mahmud, A. S. M. Rubayet Ul Alam, Md. Ekhtiar Rahman, Firoz Ahmed & Mohammed Rahmatullah. (2021) Comparative molecular investigation of the potential inhibitors against SARS-CoV-2 main protease: a molecular docking study. Journal of Biomolecular Structure and Dynamics 39:16, pages 6317-6323.
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Prativa Majee, Neha Jain & Amit Kumar. (2021) Designing of a multi-epitope vaccine candidate against Nipah virus by in silico approach: a putative prophylactic solution for the deadly virus. Journal of Biomolecular Structure and Dynamics 39:4, pages 1461-1480.
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Articles from other publishers (20)

Shirin Mahmoodi, Javad Zamani Amirzakaria & Abdolmajid Ghasemian. (2023) In silico design and validation of a novel multi-epitope vaccine candidate against structural proteins of Chikungunya virus using comprehensive immunoinformatics analyses. PLOS ONE 18:5, pages e0285177.
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Mehreen Ismail, Baogang Bai, Jinlei Guo, Yuhui Bai, Zureesha Sajid, Syed Aun Muhammad & Rehan Sadiq Shaikh. (2023) Experimental Validation of MHC Class I and II Peptide-Based Potential Vaccine Candidates for Human Papilloma Virus Using Sprague-Dawly Models. Molecules 28:4, pages 1687.
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Le Yi Chia, Palanirajan Vijayaraj Kumar, Marwan Abdelmahmoud Abdelkarim Maki, Guna Ravichandran & Sivasudha Thilagar. (2022) A Review: The Antiviral Activity of Cyclic Peptides. International Journal of Peptide Research and Therapeutics 29:1.
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Gobindo Kumar Paul, Shafi Mahmud, Amit Kumar Dutta, Swagotom Sarkar, Aysha Akter Laboni, Md. Shamim Hossain, Abir Nagata, Pranab Karmaker, Mamudul Hasan Razu, Taheruzzaman Kazi, Md. Salah Uddin, Shahriar Zaman, Md Sayeedul Islam, Mala Khan & Md. Abu Saleh. (2022) Volatile compounds of Bacillus pseudomycoides induce growth and drought tolerance in wheat (Triticum aestivum L.). Scientific Reports 12:1.
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Zakia Salod & Ozayr Mahomed. (2022) Mapping Potential Vaccine Candidates Predicted by VaxiJen for Different Viral Pathogens between 2017–2021—A Scoping Review. Vaccines 10:11, pages 1785.
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K. M. Kaderi Kibria, Md. Omar Faruque, Md. Shaid bin Islam, Hedayet Ullah, Shafi Mahmud, Mojnu Miah & Amani Ali Saleh. (2022) A conserved subunit vaccine designed against SARS-CoV-2 variants showed evidence in neutralizing the virus. Applied Microbiology and Biotechnology 106:11, pages 4091-4114.
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Baozeng Sun, Junqi Zhang, Jiawei Wang, Yang Liu, Hao Sun, Zhenhua Lu, Longyu Chen, Xushen Ding, Jingyu Pan, Chenchen Hu, Shuya Yang, Dongbo Jiang & Kun Yang. (2022) Comparative Immunoreactivity Analyses of Hantaan Virus Glycoprotein-Derived MHC-I Epitopes in Vaccination. Vaccines 10:4, pages 564.
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Manisha Shukla, Pankaj Chandley, Suman Tapryal, Narendra Kumar, Sulakshana P. Mukherjee & Soma Rohatgi. (2022) Expression, Purification, and Refolding of Chikungunya Virus Full-Length Envelope E2 Protein along with B-Cell and T-Cell Epitope Analyses Using Immuno-Informatics Approaches. ACS Omega 7:4, pages 3491-3513.
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Ahmad J. Obaidullah, Mohammed M. Alanazi, Nawaf A. Alsaif, Ashwag S. Alanazi, Hussam Albassam, Alanazi AZ, Osama I. Alwassil, Ali M. Alqahtani & Abu Montakim Tareq. (2022) Network Pharmacology- and Molecular Docking-Based Identification of Potential Phytocompounds from Argyreia capitiformis in the Treatment of Inflammation. Evidence-Based Complementary and Alternative Medicine 2022, pages 1-22.
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Mst. Sharmin Sultana Shimu, Shafi Mahmud, Trina Ekwati Tallei, Saad Ahmed Sami, Ahmad Akroman Adam, Uzzal Kumar Acharjee, Gobindo Kumar Paul, Talha Bin Emran, Shahriar Zaman, Md. Salah Uddin, Md. Abu Saleh, Sultan Alshehri, Mohammed M Ghoneim, Maha Alruwali, Ahmad J. Obaidullah, Nabilah Rahman Jui, Junghwan Kim & Bonglee Kim. (2022) Phytochemical Compound Screening to Identify Novel Small Molecules against Dengue Virus: A Docking and Dynamics Study. Molecules 27:3, pages 653.
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Shafi Mahmud, Md. Robiul Hasan, Suvro Biswas, Gobindo Kumar Paul, Shamima Afrose, Mohsana Akter Mita, Mst. Sharmin Sultana Shimu, Maria Meha Promi, Umme Hani, Mohamed Rahamathulla, Md. Arif Khan, Shahriar Zaman, Md. Salah Uddin, Mohammed Rahmatullah, Rownak Jahan, Ali M. Alqahtani, Md. Abu Saleh & Talha Bin Emran. (2021) Screening of Potent Phytochemical Inhibitors Against SARS-CoV-2 Main Protease: An Integrative Computational Approach. Frontiers in Bioinformatics 1.
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Md. Kamaruzzaman, Md. Samiul Islam, Shafi Mahmud, Shakil Ahmed Polash, Razia Sultana, Md. Amit Hasan, Chao Wang & Chunhao Jiang. (2021) In vitro and in silico approach of fungal growth inhibition by Trichoderma asperellum HbGT6-07 derived volatile organic compounds. Arabian Journal of Chemistry 14:9, pages 103290.
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Maria K. Silva, Heloísa S.S. Gomes, Ohana L.T. Silva, Stephany E. Campanelli, Daniel M.O. Campos, Josélio M.G. Araújo, José V. Fernandes, Umberto L. Fulco & Jonas I.N. Oliveira. (2021) Identification of promiscuous T cell epitopes on Mayaro virus structural proteins using immunoinformatics, molecular modeling, and QM:MM approaches. Infection, Genetics and Evolution 91, pages 104826.
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Shweta Jaiswal, Mohit Kumar, Mandeep, Sunita, Yogendra Singh & Pratyoosh Shukla. (2020) Systems Biology Approaches for Therapeutics Development Against COVID-19. Frontiers in Cellular and Infection Microbiology 10.
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