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Original Articles

Grand Molecular Dynamics: A Method for Open Systems

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Pages 5-26 | Received 01 Mar 1990, Accepted 01 Mar 1990, Published online: 23 Sep 2006

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A. Rahbari, R. Hens, M. Ramdin, O. A. Moultos, D. Dubbeldam & T. J. H. Vlugt. (2021) Recent advances in the continuous fractional component Monte Carlo methodology. Molecular Simulation 47:10-11, pages 804-823.
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A. N. Grigoriev, T. V. Kleshchonok, I. V. Markov & L. A. Bulavin. (2020) Monte-Carlo determination of adiabatic compressibility of hard spheres. Molecular Simulation 46:12, pages 905-910.
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TATYANA KUZNETSOVA & BJØRN KVAMME. (1999) Grand canonical molecular dynamics for TIP4P water systems. Molecular Physics 97:3, pages 423-431.
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Tatyana Kuznetsova & Bj⊘rn Kvamme. (1999) Ergodicity Range of Nosé-Hoover Thermostat Parameters and Entropy-Related Properties of Model Water Systems. Molecular Simulation 21:4, pages 205-225.
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N. Quirke. (1996) Some Recent Developments in Computational Chemistry. Molecular Simulation 16:1-3, pages 193-208.
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Samantha Weerasinghe & B. Montgomery Pettitt. (1994) Ideal chemical potential contribution in molecular dynamics simulations of the grand canonical ensemble. Molecular Physics 82:5, pages 897-912.
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Phil Attard & GrantA. Moule. (1993) A force-balance Monte Carlo simulation of the surface tension of a hard-sphere fluid. Molecular Physics 78:4, pages 943-959.
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Johannes Frenzel, Bernd Meyer & Dominik Marx. (2017) Bicanonical ab Initio Molecular Dynamics for Open Systems . Journal of Chemical Theory and Computation 13:8, pages 3455-3469.
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S. Özdemir Kart, M. Tomak, M. UludoĞan & T. ÇaĞın. (2006) Structural, thermodynamical, and transport properties of undercooled binary Pd–Ni alloys. Materials Science and Engineering: A 435-436, pages 736-744.
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Martin Lísal, William R. Smith & Jiří Kolafa. (2005) Molecular Simulations of Aqueous Electrolyte Solubility:  1. The Expanded-Ensemble Osmotic Molecular Dynamics Method for the Solution Phase. The Journal of Physical Chemistry B 109:26, pages 12956-12965.
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H.H. Kart, M. Tomak, M. Uludoğan & T. Çağın. (2005) Thermodynamical and mechanical properties of Pd–Ag alloys. Computational Materials Science 32:1, pages 107-117.
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H.H. Kart, M. Uludoğan, T. Çağın & M. Tomak. (2004) Simulation of crystallization and glass formation of binary Pd–Ag metal alloys. Journal of Non-Crystalline Solids 342:1-3, pages 6-11.
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S. Özdemir Kart, M. Tomak, M. Uludoğan & T. Çağın. (2004) Liquid properties of Pd–Ni alloys. Journal of Non-Crystalline Solids 337:2, pages 101-108.
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S.A. Baeurle. (2004) Grand canonical auxiliary field Monte Carlo: a new technique for simulating open systems at high density. Computer Physics Communications 157:3, pages 201-206.
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Mahnaz Firouzi, Theodore T. Tsotsis & Muhammad Sahimi. (2003) Nonequilibrium molecular dynamics simulations of transport and separation of supercritical fluid mixtures in nanoporous membranes. I. Results for a single carbon nanopore. The Journal of Chemical Physics 119:13, pages 6810-6822.
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António M. Baptista, Vitor H. Teixeira & Cláudio M. Soares. (2002) Constant- p H molecular dynamics using stochastic titration . The Journal of Chemical Physics 117:9, pages 4184-4200.
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Rajappa Chitra & Paul E. Smith. (2001) Properties of 2,2,2-trifluoroethanol and water mixtures. The Journal of Chemical Physics 114:1, pages 426-435.
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Gillian C. Lynch & B.Montgomery Pettitt. (2000) Semi-grand canonical molecular dynamics simulation of bovine pancreatic trypsin inhibitor. Chemical Physics 258:2-3, pages 405-413.
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Lifang Xu, Mehran G. Sedigh, Theodore T. Tsotsis & Muhammad Sahimi. (2000) Nonequilibrium molecular dynamics simulation of transport and separation of gases in carbon nanopores. II. Binary and ternary mixtures and comparison with the experimental data. The Journal of Chemical Physics 112:2, pages 910-922.
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Lifang Xu, Theodore T. Tsotsis & Muhammad Sahimi. (1999) Nonequilibrium molecular dynamics simulation of transport and separation of gases in carbon nanopores. I. Basic results. The Journal of Chemical Physics 111:7, pages 3252-3264.
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Robert M. Shroll & David E. Smith. (1999) Molecular dynamics simulations in the grand canonical ensemble: Formulation of a bias potential for umbrella sampling. The Journal of Chemical Physics 110:17, pages 8295-8302.
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Gillian C Lynch, John S Perkyns & B.Montgomery Pettitt. (1999) Kirkwood–Buff Thermodynamics Derived from Grand Canonical Molecular Dynamics and DRISM Calculations. Journal of Computational Physics 151:1, pages 135-145.
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T. Çağın, G. Dereli, M. Uludoğan & M. Tomak. (1999) Thermal and mechanical properties of some fcc transition metals. Physical Review B 59:5, pages 3468-3473.
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Aidan P. Thompson, David M. Ford & Grant S. Heffelfinger. (1998) Direct molecular simulation of gradient-driven diffusion. The Journal of Chemical Physics 109:15, pages 6406-6414.
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Shin-ichi Sasa & Tatsuo Shibata. (1998) Brownian Motors Driven by Particle Exchange. Journal of the Physical Society of Japan 67:6, pages 1918-1923.
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Lifang Xu, Mehran G. Sedigh, Muhammad Sahimi & Theodore T. Tsotsis. (1998) Nonequilibrium Molecular Dynamics Simulation of Transport of Gas Mixtures in Nanopores. Physical Review Letters 80:16, pages 3511-3514.
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H. Resat, M. Mezei & J. A. McCammon. (1996) Use of the Grand Canonical Ensemble in Potential of Mean Force Calculations. The Journal of Physical Chemistry 100:4, pages 1426-1433.
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Roger F. Cracknell, David Nicholson & Nicholas Quirke. (1995) Direct Molecular Dynamics Simulation of Flow Down a Chemical Potential Gradient in a Slit-Shaped Micropore. Physical Review Letters 74:13, pages 2463-2466.
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Chaomei Lo & Bruce Palmer. (1995) Alternative Hamiltonian for molecular dynamics simulations in the grand canonical ensemble. The Journal of Chemical Physics 102:2, pages 925-931.
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Bruce J. Palmer & Chaomei Lo. (1994) Molecular dynamics implementation of the Gibbs ensemble calculation. The Journal of Chemical Physics 101:12, pages 10899-10907.
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Grant S. Heffelfinger & Frank van Swol. (1994) Diffusion in Lennard‐Jones fluids using dual control volume grand canonical molecular dynamics simulation (DCV‐GCMD). The Journal of Chemical Physics 100:10, pages 7548-7552.
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John E. Mertz & B. Montgomery Pettitt. (2016) Molecular Dynamics At a Constant pH. The International Journal of Supercomputer Applications and High Performance Computing 8:1, pages 47-53.
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John R. Ray & Ralph J. Wolf. (1993) Monte Carlo simulations at constant chemical potential and pressure. The Journal of Chemical Physics 98:3, pages 2263-2267.
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