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Neetu Gupta, Kalpana Angadi & Savita Jadhav. (2022) Molecular Characterization of Carbapenem-Resistant Acinetobacter baumannii with Special Reference to Carbapenemases: A Systematic Review. Infection and Drug Resistance 15, pages 7631-7650.
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Brian M. Forde, David M. P. De Oliveira, Caitlin Falconer, Bianca Graves & Patrick N. A. Harris. (2022) Strengths and caveats of identifying resistance genes from whole genome sequencing data. Expert Review of Anti-infective Therapy 20:4, pages 533-547.
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Antonio Palazzo & René Massimiliano Marsano. (2021) Transposable elements: a jump toward the future of expression vectors. Critical Reviews in Biotechnology 41:5, pages 792-808.
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Shinyoung Lee, Raies A. Mir, Si Hong Park, Donghyuk Kim, Hae-Yeong Kim, Raoul K. Boughton, J. Glenn Morris$suffix/text()$suffix/text() & Kwangcheol C. Jeong. (2020) Prevalence of extended-spectrum β-lactamases in the local farm environment and livestock: challenges to mitigate antimicrobial resistance. Critical Reviews in Microbiology 46:1, pages 1-14.
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Claudia E. Coipan, Therese Westrell, Angela H.A.M. van Hoek, Erik Alm, Saara Kotila, Bas Berbers, Sigrid C.J. de Keersmaecker, Pieter-Jan Ceyssens, Maria Louise Borg, Marie Chattaway, Jacquelyn McCormick, Timothy J. Dallman & Eelco Franz. (2020) Genomic epidemiology of emerging ESBL-producing Salmonella Kentucky blaCTX-M-14b in Europe. Emerging Microbes & Infections 9:1, pages 2124-2135.
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Man Hwan Oh, Chul Hee Choi & Je Chul Lee. (2017) The effect of ISAba1-mediated adeN gene disruption on Acinetobacter baumannii pathogenesis. Virulence 8:7, pages 1088-1090.
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Articles from other publishers (211)
Florian Goettelmann, Ralf Koebnik, Veronica Roman-Reyna, Bruno Studer & Roland Kölliker. (2023) High genomic plasticity and unique features of Xanthomonas translucens pv. graminis revealed through comparative analysis of complete genome sequences. BMC Genomics 24:1.
Crossref
Crossref
Kailun Zhang, Robert F. Potter, Jamie Marino, Carol E. Muenks, Matthew G. Lammers, Jennifer Dien Bard, Tanis C. Dingle, Romney Humphries, Lars F. Westblade, Carey-Ann D. Burnham & Gautam Dantas. (2023)
Comparative genomics reveals the correlations of stress response genes and bacteriophages in developing antibiotic resistance of
Staphylococcus saprophyticus
. mSystems.
Crossref
Crossref
Yuki Kanai, Saburo Tsuru & Chikara Furusawa. (2023) Insertion sequences: Simple mobile elements with rich ecological and evolutionary structures. Current Opinion in Systems Biology 36, pages 100481.
Crossref
Crossref
José E. Villacís, Hugo G. Castelán-Sánchez, Jorge Rojas-Vargas, Ulises E. Rodríguez-Cruz, Viviana Albán, Jorge A. Reyes, Pablo M. Meza-Rodríguez, Sonia Dávila-Ramos, Fernando Villavicencio, Margarita Galarza & Monica C. Gestal. (2023) Emergence of Raoultella ornithinolytica in human infections from different hospitals in Ecuador with OXA-48-producing resistance. Frontiers in Microbiology 14.
Crossref
Crossref
Muhammad Adnan Sabar, Than Van Huy, Yoshinori Sugie, Hiroyuki Wada, Bo Zhao, Norihisa Matsuura, Masaru Ihara, Toru Watanabe, Hiroaki Tanaka & Ryo Honda. (2023) Antimicrobial resistome and mobilome in the urban river affected by combined sewer overflows and wastewater treatment effluent. Journal of Water and Health 21:8, pages 1032-1050.
Crossref
Crossref
Bessan Aljanazreh, Assalla Abu Shamseye, Abdalhalim Abuawad & Yaqoub Ashhab. (2023) Genomic distribution of the insertion sequence IS711 reveal a potential role in Brucella genome plasticity and host preference. Infection, Genetics and Evolution 112, pages 105457.
Crossref
Crossref
Yong Sheng, Hengyu Wang, Yixin Ou, Yingying Wu, Wei Ding, Meifeng Tao, Shuangjun Lin, Zixin Deng, Linquan Bai & Qianjin Kang. (2023) Insertion sequence transposition inactivates CRISPR-Cas immunity. Nature Communications 14:1.
Crossref
Crossref
Martijn Callens, Caroline J Rose, Michael Finnegan, François Gatchitch, Léna Simon, Jeanne Hamet, Léa Pradier, Marie-Pierre Dubois & Stéphanie Bedhomme. (2023)
Hypermutator emergence in experimental
Escherichia coli
populations is stress-type dependent
. Evolution Letters 7:4, pages 252-261.
Crossref
Crossref
Samuel T. E. Greenrod, Martina Stoycheva, John Elphinstone & Ville-Petri Friman. (2023) Influence of insertion sequences on population structure of phytopathogenic bacteria in the Ralstonia solanacearum species complex. Microbiology 169:7.
Crossref
Crossref
Patricia Siguier, Philippe Rousseau, François Cornet & Michael Chandler. (2023) A subclass of the IS1202 family of bacterial insertion sequences targets XerCD recombination sites. Plasmid 127, pages 102696.
Crossref
Crossref
Max A English, Miguel A Alcantar & James J Collins. (2023) A self‐propagating, barcoded transposon system for the dynamic rewiring of genomic networks. Molecular Systems Biology 19:6.
Crossref
Crossref
Christiana O. Shobo, Daniel G. Amoako, Mushal Allam, Arshad Ismail, Sabiha Y. Essack & Linda A. Bester. (2023) A Genomic Snapshot of Antibiotic-ResistantEnterococcus faecalis within Public Hospital Environments in South Africa. Global Health 2023, pages 1-11.
Crossref
Crossref
Sophie Reissier, Malo Penven, François Guérin & Vincent Cattoir. (2023) Recent Trends in Antimicrobial Resistance among Anaerobic Clinical Isolates. Microorganisms 11:6, pages 1474.
Crossref
Crossref
Liuyan Gu, Xinxin Xiao, Ge Zhao, Paul Kempen, Shuangqing Zhao, Jianming Liu, Sang Yup Lee & Christian Solem. (2023)
Rewiring the respiratory pathway of
Lactococcus lactis
to enhance extracellular electron transfer
. Microbial Biotechnology 16:6, pages 1277-1292.
Crossref
Crossref
Xia Zhou, Jiao Pan, Yaohai Wang, Michael Lynch, Hongan Long & Yu Zhang. (2023)
De Novo
Structural Variations of
Escherichia coli
Detected by Nanopore Long-Read Sequencing
. Genome Biology and Evolution 15:6.
Crossref
Crossref
Yanru Zhang, Yinping Xiang, Rui Xu, Jing Huang, Jiaqin Deng, Xuan Zhang, Zijian Wu, Zhongliang Huang, Zhaohui Yang, Jingliang Xu, Wenlong Xiong & Hui Li. (2023) Magnetic biochar promotes the risk of mobile genetic elements propagation in sludge anaerobic digestion. Journal of Environmental Management 335, pages 117492.
Crossref
Crossref
Theo W. Dreher, Robin Matthews, Edward W. DavisIIII & Ryan S. Mueller. (2023) Woronichinia naegeliana: A common nontoxigenic component of temperate freshwater cyanobacterial blooms with 30% of its genome in transposons. Harmful Algae 125, pages 102433.
Crossref
Crossref
Brian R. Varghese, Kelvin G. K. Goh, Devika Desai, Dhruba Acharya, Collin Chee, Matthew J. Sullivan & Glen C. Ulett. (2023) Variable resistance to zinc intoxication among Streptococcus agalactiae reveals a novel IS1381 insertion element within the zinc efflux transporter gene czcD. Frontiers in Immunology 14.
Crossref
Crossref
Shanshan Huang, Huiying Li, Liyuan Ma, Rui Liu, Yiran Li, Hongmei Wang, Xiaolu Lu, Xinping Huang, Xinhong Wu & Xueduan Liu. (2023) Insertion sequence contributes to the evolution and environmental adaptation of Acidithiobacillus. BMC Genomics 24:1.
Crossref
Crossref
Alejandro V. Cano, Bryan L. Gitschlag, Hana Rozhoňová, Arlin Stoltzfus, David M. McCandlish & Joshua L. Payne. (2023) Mutation bias and the predictability of evolution. Philosophical Transactions of the Royal Society B: Biological Sciences 378:1877.
Crossref
Crossref
Ali H. A. Elbehery, Elisabeth Beason & Rania Siam. (2023) Metagenomic profiling of antibiotic resistance genes in Red Sea brine pools. Archives of Microbiology 205:5.
Crossref
Crossref
Mercedes Spínola-Amilibia, Lidia Araújo-Bazán, Álvaro de la Gándara, James M. Berger & Ernesto Arias-Palomo. (2023) IS21 family transposase cleaved donor complex traps two right-handed superhelical crossings. Nature Communications 14:1.
Crossref
Crossref
Esteban E. Nieto, Marianela Macchi, María P. Valacco, Sabrina Festa, Irma S. Morelli & Bibiana M. Coppotelli. (2023) Metaproteomic and gene expression analysis of interspecies interactions in a PAH-degrading synthetic microbial consortium constructed with the key microbes of a natural consortium. Biodegradation 34:2, pages 181-197.
Crossref
Crossref
Dipen Pulami, Lina Schwabe, Jochen Blom, Oliver Schwengers, Gottfried Wilharm, Peter Kämpfer & Stefanie P. Glaeser. (2023) Genomic plasticity and adaptive capacity of the quaternary alkyl-ammonium compound and copper tolerant Acinetobacter bohemicus strain QAC-21b isolated from pig manure. Antonie van Leeuwenhoek 116:4, pages 327-342.
Crossref
Crossref
Guillermo Ortiz CharnecoPaul P. de Waal, Irma M.H. van Rijswijck, Noël N.M.E. van Peij, Douwe van SinderenJennifer Mahony. (2023) Bacteriophages in the Dairy Industry: A Problem Solved?. Annual Review of Food Science and Technology 14:1, pages 367-385.
Crossref
Crossref
Fanny Berglund, Stefan Ebmeyer, Erik Kristiansson & D. G. Joakim Larsson. (2023) Evidence for wastewaters as environments where mobile antibiotic resistance genes emerge. Communications Biology 6:1.
Crossref
Crossref
Eunjung Shin, Hee Seong Noh, Qianying Ye & Sung-Jae Lee. (2023) Hydrogen peroxide treatment induces the transposition of an insertion sequence in Deinococcus radiopugnans DY59. Frontiers in Microbiology 14.
Crossref
Crossref
Theresa Maria Wagner, Benjamin Peter Howden, Arnfinn Sundsfjord & Kristin Hegstad. (2023) Transiently silent acquired antimicrobial resistance: an emerging challenge in susceptibility testing. Journal of Antimicrobial Chemotherapy 78:3, pages 586-598.
Crossref
Crossref
Ting Xie, Xiujiao Wu, Le Luo, Yuan Qu, Rong Fan, Shiping Wu, Youhua Long & Zhibo Zhao. (2023)
Natural variation in the
hrpL
promoter renders the phytopathogen
Pseudomonas syringae
pv.
actinidiae
nonpathogenic
. Molecular Plant Pathology 24:3, pages 262-271.
Crossref
Crossref
I.S. Sazykin & M.A. Sazykina. (2023) The role of oxidative stress in genome destabilization and adaptive evolution of bacteria. Gene 857, pages 147170.
Crossref
Crossref
Juliana Nunes Ramos, Paulo Victor Pereira Baio, João Flávio Carneiro Veras, Érica Miranda Damásio Vieira, Ana Luiza Mattos-Guaraldi & Verônica Viana Vieira. (2022) Novel configurations of type I-E CRISPR-Cas system in Corynebacterium striatum clinical isolates. Brazilian Journal of Microbiology 54:1, pages 69-80.
Crossref
Crossref
Gabriela N. Cerbino, German M. Traglia, Teolincacihuatl Ayala Nuñez, Gisela Parmeciano Di Noto, María Soledad Ramírez, Daniela Centrón, Andrés Iriarte & Cecilia Quiroga. (2023) Comparative genome analysis of the genus Shewanella unravels the association of key genetic traits with known and potential pathogenic lineages. Frontiers in Microbiology 14.
Crossref
Crossref
Patricia A Calvo, Víctor Mateo-Cáceres, Silvia Díaz-Arco, Modesto Redrejo-Rodríguez & Miguel de Vega. (2023)
The enterohemorrhagic
Escherichia coli
insertion sequence-excision enhancer protein is a DNA polymerase with microhomology-mediated end-joining activity
. Nucleic Acids Research 51:3, pages 1189-1207.
Crossref
Crossref
Yali Wang, Mengke Guo, Naisu Yang, Zhongxia Guan, Han Wu, Numan Ullah, Emmanuel Asare, Shasha Shi, Bo Gao & Chengyi Song. (2023) Phylogenetic Relationships among TnpB-Containing Mobile Elements in Six Bacterial Species. Genes 14:2, pages 523.
Crossref
Crossref
Alex Orlek, Muna F. Anjum, Alison E. Mather, Nicole Stoesser & A. Sarah Walker. (2023) Factors associated with plasmid antibiotic resistance gene carriage revealed using large-scale multivariable analysis. Scientific Reports 13:1.
Crossref
Crossref
Lillian C Lowrey, Leslie A Kent, Bridgett M Rios, Angelica B Ocasio & Peggy A Cotter. (2023) An IS-mediated, RecA-dependent, bet-hedging strategy in Burkholderia thailandensis. eLife 12.
Crossref
Crossref
Pravil Pokharel, Sabin Dhakal & Charles M. Dozois. (2023) The Diversity of Escherichia coli Pathotypes and Vaccination Strategies against This Versatile Bacterial Pathogen. Microorganisms 11:2, pages 344.
Crossref
Crossref
Suad Algarni, Jing Han, Dereje D. Gudeta, Bijay K. Khajanchi, Steven C. Ricke, Young Min Kwon, Douglas D. Rhoads & Steven L. Foley. (2023) In silico analyses of diversity and dissemination of antimicrobial resistance genes and mobile genetics elements, for plasmids of enteric pathogens. Frontiers in Microbiology 13.
Crossref
Crossref
Despoina Eugenia Kiousi, Joanna Bucka-Kolendo, Adrian Wojtczak, Barbara Sokołowska, Agapi I. Doulgeraki & Alex Galanis. (2023) Genomic Analysis and In Vitro Investigation of the Hop Resistance Phenotype of Two Novel Loigolactobacillus backii Strains, Isolated from Spoiled Beer. Microorganisms 11:2, pages 280.
Crossref
Crossref
Sheng Liu, Jian Jiao & Chang-Fu Tian. (2023) Adaptive Evolution of Rhizobial Symbiosis beyond Horizontal Gene Transfer: From Genome Innovation to Regulation Reconstruction. Genes 14:2, pages 274.
Crossref
Crossref
Mao Chen, Yuhuan Huang, Yudi Zheng, Bo Wu & Mingxiong He. (2023)
The escape of CRISPR-mediated gene editing in
Zymomonas mobilis
. FEMS Microbiology Letters 370.
Crossref
Crossref
Lucie Galiot, Xavier C. Monger & Antony T. Vincent. (2023) Studying the Association between Antibiotic Resistance Genes and Insertion Sequences in Metagenomes: Challenges and Pitfalls. Antibiotics 12:1, pages 175.
Crossref
Crossref
Konstantin V. Moiseenko, Anna V. Begunova, Olga S. Savinova, Olga A. Glazunova, Irina V. Rozhkova & Tatyana V. Fedorova. (2023) Biochemical and Genomic Characterization of Two New Strains of Lacticaseibacillus paracasei Isolated from the Traditional Corn-Based Beverage of South Africa, Mahewu, and Their Comparison with Strains Isolated from Kefir Grains. Foods 12:1, pages 223.
Crossref
Crossref
Bilal Aslam, Moeed Ahmad, Muhammad Usama Tariq, Saima Muzammil, Abu Baker Siddique, Mohsin Khurshid, Aqsa Shahid, Muhammad Hidayat Rasool, Tamoor Hamid Chaudhry, Afreenish Amir, Muhammad Salman & Zulqarnain Baloch. 2023. Degradation of Antibiotics and Antibiotic-Resistant Bacteria from Various Sources. Degradation of Antibiotics and Antibiotic-Resistant Bacteria from Various Sources
1
37
.
Mohammed Walid Chemao-Elfihri, Mohammed Hakmi, Abdelmounim Essabbar, Amina Manni, Meriem Laamarti, Souad Kartti, Tarek Alouane, Loubna Temsamani, Jamal-Eddine Eljamali, Laila Sbabou, Tarik Aanniz, Mouna Ouadghiri, Lahcen Belyamani, Azeddine Ibrahimi & Abdelkarim Filali-Maltouf. (2022) Genomic analysis of Paenibacillus sp. MDMC362 from the Merzouga desert leads to the identification of a potentially thermostable catalase. Antonie van Leeuwenhoek 116:1, pages 21-38.
Crossref
Crossref
Xin Yin, Qingqing Fang & Zhiyong Zong. (2022)
Interruption of Capsular Polysaccharide Biosynthesis Gene
wbaZ
by Insertion Sequence IS
903B
Mediates Resistance to a Lytic Phage against ST11 K64 Carbapenem-Resistant Klebsiella pneumoniae
. mSphere 7:6.
Crossref
Crossref
Rauf Salamzade, Abigail L. Manson, Bruce J. Walker, Thea Brennan-Krohn, Colin J. Worby, Peijun Ma, Lorrie L. He, Terrance P. Shea, James Qu, Sinéad B. Chapman, Whitney Howe, Sarah K. Young, Jenna I. Wurster, Mary L. Delaney, Sanjat Kanjilal, Andrew B. Onderdonk, Cassiana E. Bittencourt, Gabrielle M. Gussin, Diane Kim, Ellena M. Peterson, Mary Jane Ferraro, David C. Hooper, Erica S. Shenoy, Christina A. Cuomo, Lisa A. Cosimi, Susan S. Huang, James E. Kirby, Virginia M. Pierce, Roby P. Bhattacharyya & Ashlee M. Earl. (2022) Inter-species geographic signatures for tracing horizontal gene transfer and long-term persistence of carbapenem resistance. Genome Medicine 14:1.
Crossref
Crossref
Sebastien Tempel, Justin Bedo & Emmanuel Talla. (2022) From a large-scale genomic analysis of insertion sequences to insights into their regulatory roles in prokaryotes. BMC Genomics 23:1.
Crossref
Crossref
Federico Turco, Marco Garavaglia, Rob Van Houdt, Phil Hill, Frankie J. Rawson & Katalin Kovacs. (2022)
Synthetic Biology Toolbox, Including a Single-Plasmid CRISPR-Cas9 System to Biologically Engineer the Electrogenic, Metal-Resistant Bacterium
Cupriavidus metallidurans
CH34
. ACS Synthetic Biology 11:11, pages 3617-3628.
Crossref
Crossref
Sonja Koppenhöfer, Jürgen Tomasch & Andrew S. Lang. (2022) Shared properties of gene transfer agent and core genes revealed by comparative genomics of Alphaproteobacteria. Microbial Genomics 8:11.
Crossref
Crossref
Jennifer L. Goff, Elizabeth G. Szink, Michael P. Thorgersen, Andrew D. Putt, Yupeng Fan, Lauren M. Lui, Torben N. Nielsen, Kristopher A. Hunt, Jonathan P. Michael, Yajiao Wang, Daliang Ning, Ying Fu, Joy D. Van Nostrand, Farris L. PooleIIII, John‐Marc Chandonia, Terry C. Hazen, David A. Stahl, Jizhong Zhou, Adam P. Arkin & Michael W. W. Adams. (2022)
Ecophysiological and genomic analyses of a representative isolate of highly abundant
Bacillus cereus
strains in contaminated subsurface sediments
. Environmental Microbiology 24:11, pages 5546-5560.
Crossref
Crossref
Phani Rama Krishna Behra, B. M. Fredrik Pettersson, Malavika Ramesh, Sarbashis Das, Santanu Dasgupta & Leif A. Kirsebom. (2022) Comparative genome analysis of mycobacteria focusing on tRNA and non-coding RNA. BMC Genomics 23:1.
Crossref
Crossref
Matthieu Haudiquet, Jorge Moura de Sousa, Marie Touchon & Eduardo P. C. Rocha. (2022) Selfish, promiscuous and sometimes useful: how mobile genetic elements drive horizontal gene transfer in microbial populations. Philosophical Transactions of the Royal Society B: Biological Sciences 377:1861.
Crossref
Crossref
Rekha Rana, Kanika Bansal, Amandeep Kaur & Prabhu B. Patil. (2022) Genome dynamics mediated by repetitive and mobile elements in Xanthomonas citri pv. durantae. Access Microbiology 4:10.
Crossref
Crossref
Shengrui Wu, Pingfang Tian & Tianwei Tan. (2022) Genomic landscapes of bacterial transposons and their applications in strain improvement. Applied Microbiology and Biotechnology 106:19-20, pages 6383-6396.
Crossref
Crossref
Rumyana Markovska, Yuliya Marteva-Proevska, Tzvetan Velinov, Ivan Pavlov, Radka Kaneva & Lyudmila Boyanova. (2022) Detection of different colistin resistance mechanisms among multidrug resistant Klebsiella pneumoniae isolates in Bulgaria. Acta Microbiologica et Immunologica Hungarica 69:3, pages 220-227.
Crossref
Crossref
Deepak Balasubramanian, Mario López-Pérez, Trudy-Ann Grant, C. Brandon Ogbunugafor & Salvador Almagro-Moreno. (2022) Molecular mechanisms and drivers of pathogen emergence. Trends in Microbiology 30:9, pages 898-911.
Crossref
Crossref
Marco Colnaghi, Nick Lane & Andrew Pomiankowski. (2022) Repeat sequences limit the effectiveness of lateral gene transfer and favored the evolution of meiotic sex in early eukaryotes. Proceedings of the National Academy of Sciences 119:35.
Crossref
Crossref
Chanjae Lee, Qianying Ye, Eunjung Shin, Tian Ting & Sung-Jae Lee. (2022) Acquisition of Streptomycin Resistance by Oxidative Stress Induced by Hydrogen Peroxide in Radiation-Resistant Bacterium Deinococcus geothermalis. International Journal of Molecular Sciences 23:17, pages 9764.
Crossref
Crossref
Ana Rodriguez Jimenez, Nadège Guiglielmoni, Lise Goetghebuer, Etienne Dechamps, Isabelle F. George & Jean-François Flot. (2022) Comparative genome analysis of Vagococcus fluvialis reveals abundance of mobile genetic elements in sponge-isolated strains. BMC Genomics 23:1.
Crossref
Crossref
David F Barker. (2022)
A synergistic arrangement of two unrelated IS elements facilitates adjacent deletion in
Micrococcus luteus
ATCC49732
. FEMS Microbiology Letters 369:1.
Crossref
Crossref
Zulema Udaondo, Kaleb Z. Abram, Atul Kothari & Se-Ran Jun. (2022) Insertion sequences and other mobile elements associated with antibiotic resistance genes in Enterococcus isolates from an inpatient with prolonged bacteraemia. Microbial Genomics 8:8.
Crossref
Crossref
Keiji Nakamura, Kazuko Seto, Junko Isobe, Itsuki Taniguchi, Yasuhiro Gotoh & Tetsuya Hayashi. (2022)
Insertion Sequence (IS)-Excision Enhancer (IEE)-Mediated IS Excision from the
lacZ
Gene Restores the Lactose Utilization Defect of Shiga Toxin-Producing Escherichia coli O121:H19 Strains and Is Responsible for Their Delayed Lactose Utilization Phenotype
. Applied and Environmental Microbiology.
Crossref
Crossref
Ferenc Olasz, Mónika Szabó, Alexandra Veress, Márton Bibó & János Kiss. (2022) The dynamic network of IS30 transposition pathways. PLOS ONE 17:7, pages e0271414.
Crossref
Crossref
Kathryn M. Styles, Rebecca K. Locke, Lauren A. Cowley, Aidan T. Brown & Antonia P. Sagona. (2022) Transposable Element Insertions into the Escherichia coli Polysialic Acid Gene Cluster Result in Resistance to the K1F Bacteriophage. Microbiology Spectrum 10:3.
Crossref
Crossref
Prasert Apiwatsiri, Pawiya Pupa, Wandee Sirichokchatchawan, Vorthon Sawaswong, Pattaraporn Nimsamer, Sunchai Payungporn, David J. Hampson & Nuvee Prapasarakul. (2022) Metagenomic analysis of the gut microbiota in piglets either challenged or not with enterotoxigenic Escherichia coli reveals beneficial effects of probiotics on microbiome composition, resistome, digestive function and oxidative stress responses. PLOS ONE 17:6, pages e0269959.
Crossref
Crossref
Robert A. Moran, Haiyang Liu, Emma L. Doughty, Xiaoting Hua, Elizabeth A. Cummins, Tomas Liveikis, Alan McNally, Zhihui Zhou, Willem van Schaik & Yunsong Yu. (2022) GR13-type plasmids in Acinetobacter potentiate the accumulation and horizontal transfer of diverse accessory genes. Microbial Genomics 8:6.
Crossref
Crossref
Lili Li, Yawen Xiao, Rikke Heidemann Olsen, Chong Wang, Hecheng Meng & Lei Shi. (2022) Short- and long-read metagenomics insight into the genetic contexts and hosts of mobile antibiotic resistome in Chinese swine farms. Science of The Total Environment 827, pages 154352.
Crossref
Crossref
Insha Sultan, Mohammad Tahir Siddiqui, Firdoos Ahmad Gogry & Qazi Mohd. Rizwanul Haq. (2022) Molecular characterization of resistance determinants and mobile genetic elements of ESBL producing multidrug-resistant bacteria from freshwater lakes in Kashmir, India. Science of The Total Environment 827, pages 154221.
Crossref
Crossref
Awadhesh Prajapati, Revanaiah Yogisharadhya, Nihar Nalini Mohanty, Suresh Kumar Mendem, Azharuddin Nizamuddin, Mohammed Mudassar Chanda & Sathish Bhadravati Shivachandra. (2022) Comparative genome analysis of Pasteurella multocida serogroup B:2 strains causing haemorrhagic septicaemia (HS) in bovines. Gene 826, pages 146452.
Crossref
Crossref
María Celina Zabaloy, Marco Allegrini, Keren Hernandez Guijarro, Filipe Behrends Kraemer, Héctor Morrás & Leonardo Erijman. (2022) Microbiomes and glyphosate biodegradation in edaphic and aquatic environments: recent issues and trends. World Journal of Microbiology and Biotechnology 38:6.
Crossref
Crossref
Awadhesh Prajapati, Revanaiah Yogisharadhya, Nihar Nalini Mohanty, Suresh Kumar Mendem, Azharuddin Nizamuddin, Mohammed Mudassar Chanda & Sathish Bhadravati Shivachandra. (2022) Whole-genome sequence analysis of Clostridium chauvoei isolated from clinical case of black quarter (BQ) from India. Archives of Microbiology 204:6.
Crossref
Crossref
Myint Zaw, Judith R Rathjen, Yi Zhou, Maarten H Ryder & Matthew D Denton. (2022) Rhizobial diversity is associated with inoculation history at a two-continent scale. FEMS Microbiology Ecology 98:5.
Crossref
Crossref
D. G. Joakim Larsson & Carl-Fredrik Flach. (2021) Antibiotic resistance in the environment. Nature Reviews Microbiology 20:5, pages 257-269.
Crossref
Crossref
Matthew J. Neave, Patrick Mileto, Ancy Joseph, Tristan J. Reid, Angela Scott, David T. Williams & Anthony L. Keyburn. (2022) Comparative genomic analysis of the first Ehrlichia canis detections in Australia. Ticks and Tick-borne Diseases 13:3, pages 101909.
Crossref
Crossref
Qianying Ye, Eunjung Shin, Chanjae Lee, Nakjun Choi, Yeonho Kim, Ki Sun Yoon & Sung-Jae Lee. (2022) Transposition of insertion sequences by dielectric barrier discharge plasma and gamma irradiation in the radiation-resistant bacterium Deinococcus geothermalis. Journal of Microbiological Methods 196, pages 106473.
Crossref
Crossref
Hikaru Suenaga, Tomohiko Matsuzawa & Takehiko Sahara. (2022) Discovery by metagenomics of a functional tandem repeat sequence that controls gene expression in bacteria. FEMS Microbiology Ecology 98:4.
Crossref
Crossref
Willames M. B. S. Martins, Ezequiel A. Nascimento, Rodrigo Cayô & Ana C. Gales. (2022)
Role of IS
Kpn23
in
bla
BKC-1
Expression and Mobilization
. Antimicrobial Agents and Chemotherapy 66:4.
Crossref
Crossref
B. G. Andryukov, N. N. Besednova & T. S. Zaporozhets. (2022) Mobile Genetic Elements of Prokaryotes and Their Role in the Formation of Antibiotic Resistance in Pathogenic Bacteria. Antibiotics and Chemotherapy 67:1-2, pages 62-74.
Crossref
Crossref
Weiliang Zeng, Luozhu Feng, Changrui Qian, Tao Chen, Sipei Wang, Ying Zhang, Xiangkuo Zheng, Lingbo Wang, Shixing Liu, Tieli Zhou & Yao Sun. (2022) Acquisition of Daptomycin Resistance by Enterococcus faecium Confers Collateral Sensitivity to Glycopeptides. Frontiers in Microbiology 13.
Crossref
Crossref
Suad Algarni, Steven C. Ricke, Steven L. Foley & Jing Han. (2022) The Dynamics of the Antimicrobial Resistance Mobilome of Salmonella enterica and Related Enteric Bacteria. Frontiers in Microbiology 13.
Crossref
Crossref
Anna Cuscó, Daniel Pérez, Joaquim Viñes, Norma Fàbregas & Olga Francino. (2022) Novel canine high-quality metagenome-assembled genomes, prophages and host-associated plasmids provided by long-read metagenomics together with Hi-C proximity ligation. Microbial Genomics 8:3.
Crossref
Crossref
Massimiliano Marazzato, Daniela Scribano, Meysam Sarshar, Francesca Brunetti, Silvia Fillo, Antonella Fortunato, Florigio Lista, Anna Teresa Palamara, Carlo Zagaglia & Cecilia Ambrosi. (2022) Genetic Diversity of Antimicrobial Resistance and Key Virulence Features in Two Extensively Drug-Resistant Acinetobacter baumannii Isolates. International Journal of Environmental Research and Public Health 19:5, pages 2870.
Crossref
Crossref
Peter Kotsoana Montso, Cornelius Carlos Bezuidenhout, Charlotte Mienie, Yinka M. Somorin, Olumide A. Odeyemi, Victor Mlambo & Collins Njie Ateba. (2022) Genetic diversity and whole genome sequence analysis data of multidrug resistant atypical enteropathogenic Escherichia coli O177 strains: An assessment of food safety and public health implications. International Journal of Food Microbiology 365, pages 109555.
Crossref
Crossref
Eunjung Shin, Qianying Ye & Sung-Jae Lee. (2022) Active Transposition of Insertion Sequences in Prokaryotes: Insights from the Response of Deinococcus geothermalis to Oxidative Stress. Antioxidants 11:3, pages 481.
Crossref
Crossref
Laura Alvarez-Fraga, Minh-Duy Phan, Kelvin G. K. Goh, Nguyen Thi Khanh Nhu, Steven J. Hancock, Luke P. Allsopp, Kate M. Peters, Brian M. Forde, Leah W. Roberts, Matthew J. Sullivan, Makrina Totsika, Scott A. Beatson, Glen C. Ulett & Mark A. Schembri. (2022) Differential Afa/Dr Fimbriae Expression in the Multidrug-Resistant Escherichia coli ST131 Clone. mBio 13:1.
Crossref
Crossref
David Van der Veken, Charlie Hollanders, Marko Verce, Chris Michiels, Steven Ballet, Stefan Weckx & Frédéric Leroy. (2022) Genome-Based Characterization of a Plasmid-Associated Micrococcin P1 Biosynthetic Gene Cluster and Virulence Factors in Mammaliicoccus sciuri IMDO-S72. Applied and Environmental Microbiology 88:4.
Crossref
Crossref
Yuki Kanai, Saburo Tsuru & Chikara Furusawa. (2022) Experimental demonstration of operon formation catalyzed by insertion sequence. Nucleic Acids Research 50:3, pages 1673-1686.
Crossref
Crossref
Kateřina Burkartová, Jiří Dresler, Jakub Rídl & Lukáš Falteisek. (2022) Population Genomics of Microbial Biostalactites: Non-recombinogenic Genome Islands and Microdiversification by Transposons. Frontiers in Microbiology 13.
Crossref
Crossref
Liyuan Ma, Weiyi Yang, Shanshan Huang, Rui Liu, Huiying Li, Xinping Huang, Junming Xiong & Xueduan Liu. (2022) Integrative Assessments on Molecular Taxonomy of Acidiferrobacter thiooxydans ZJ and Its Environmental Adaptation Based on Mobile Genetic Elements. Frontiers in Microbiology 13.
Crossref
Crossref
Travis G. Wentz, Benjamin J. M. Tremblay, Marite Bradshaw, Andrew C. Doxey, Shashi K. Sharma, John-Demian Sauer & Sabine Pellett. (2022) Endogenous CRISPR-Cas Systems in Group I Clostridium botulinum and Clostridium sporogenes Do Not Directly Target the Botulinum Neurotoxin Gene Cluster. Frontiers in Microbiology 12.
Crossref
Crossref
Kazuyoshi Gotoh, I. Putu Bayu Mayura, Yusaku Enomoto, Koji Iio, Osamu Matsushita, Fumio Otsuka & Hideharu Hagiya. (2021) Detection of in-frame mutation by IS30-family insertion sequence in the phospholipid phosphatidylglycerol synthase gene (pgsA2) of high-level daptomycin-resistant Corynebacterium striatum. European Journal of Clinical Microbiology & Infectious Diseases 41:2, pages 331-333.
Crossref
Crossref
Érica L. Fonseca & Ana Carolina Vicente. (2022) Integron Functionality and Genome Innovation: An Update on the Subtle and Smart Strategy of Integrase and Gene Cassette Expression Regulation. Microorganisms 10:2, pages 224.
Crossref
Crossref
Benjamín Leyton-Carcaman & Michel Abanto. (2022) Beyond to the Stable: Role of the Insertion Sequences as Epidemiological Descriptors in Corynebacterium striatum. Frontiers in Microbiology 13.
Crossref
Crossref
Haruka Arashida, Haruka Odake, Masayuki Sugawara, Ryota Noda, Kaori Kakizaki, Satoshi Ohkubo, Hisayuki Mitsui, Shusei Sato & Kiwamu Minamisawa. (2021) Evolution of rhizobial symbiosis islands through insertion sequence-mediated deletion and duplication. The ISME Journal 16:1, pages 112-121.
Crossref
Crossref
Anuradha Singh, Mohammad Shahid, Gourav Pratap Singh & Haris M. Khan. 2022. Beta-Lactam Resistance in Gram-Negative Bacteria. Beta-Lactam Resistance in Gram-Negative Bacteria
141
152
.
Yu-Zhang He, Xu Kuang, Teng-Fei Long, Gong Li, Hao Ren, Bing He, Jin-Ru Yan, Xiao-Ping Liao, Ya-Hong Liu, Liang Chen & Jian Sun. (2022)
Re-engineering a mobile-CRISPR/Cas9 system for antimicrobial resistance gene curing and immunization in
Escherichia coli
. Journal of Antimicrobial Chemotherapy 77:1, pages 74-82.
Crossref
Crossref
Carolina Silva Nodari, Sebastian Alexander Fuchs, Kyriaki Xanthopoulou, Rodrigo Cayô, Harald Seifert, Ana Cristina Gales, Alexander Dilthey & Paul G. Higgins. (2021)
pmrCAB
Recombination Events among Colistin-Susceptible and -Resistant Acinetobacter baumannii Clinical Isolates Belonging to International Clone 7
. mSphere 6:6.
Crossref
Crossref
Arnar K. S. Sandholt, Aleksija Neimanis, Anna Roos, Jenny Eriksson & Robert Söderlund. (2021) Genomic signatures of host adaptation in group B Salmonella enterica ST416/ST417 from harbour porpoises. Veterinary Research 52:1.
Crossref
Crossref
Galia R. Zimerman, Dina Svetlitsky, Meirav Zehavi & Michal Ziv-Ukelson. (2021) Approximate search for known gene clusters in new genomes using PQ-trees. Algorithms for Molecular Biology 16:1.
Crossref
Crossref
Janka Puterová & Tomáš Martínek. (2021) digIS: towards detecting distant and putative novel insertion sequence elements in prokaryotic genomes. BMC Bioinformatics 22:1.
Crossref
Crossref
Fikri S. Widyatama, Nobuyoshi Yagi, Rosantia Sarassari, Toshiro Shirakawa, Danh Tuyen Le, Mai Huong Thi Bui, Kuntaman Kuntaman & Itaru Hirai. (2021)
Analysis of the upstream genetic structures of the IS
Ecp1
‐
bla
CTX‐M
transposition units in
Escherichia coli
isolates carrying
bla
CTX‐M
obtained from the Indonesian and Vietnamese communities
. Microbiology and Immunology 65:12, pages 542-550.
Crossref
Crossref
Inês Castro, Hugo Costa, Israela Turgeman-Grott, Thorsten Allers, Sónia Mendo & Tânia Caetano. (2021) The lanthipeptide biosynthetic clusters of the domain Archaea. Microbiological Research 253, pages 126884.
Crossref
Crossref
Maja Velhner, Dalibor Todorović, Katarina Novović, Branko Jovčić, Gospava Lazić, Milan Kojić & Corinna Kehrenberg. (2021) Characterization of antibiotic resistance in Escherichia coli isolates from Black-headed gulls (Larus ridibundus) present in the city of Novi Sad, Serbia. Veterinary Research Communications 45:4, pages 199-209.
Crossref
Crossref
Zonghui Jian, Li Zeng, Taojie Xu, Shuai Sun, Shixiong Yan, Lan Yang, Ying Huang, Junjing Jia & Tengfei Dou. (2021) Antibiotic resistance genes in bacteria: Occurrence, spread, and control. Journal of Basic Microbiology 61:12, pages 1049-1070.
Crossref
Crossref
Yu Cao, Katherine Dever, Sathesh Kumar Sivasankaran, Scott V. Nguyen, Guerrino Macori, Ankita Naithani, Gopal R. Gopinath, Ben Tall, Angelika Lehner, Roger Stephan, Shabarinath Srikumar & Séamus Fanning. (2021) Alterations in the Transcriptional Landscape Allow Differential Desiccation Tolerance in Clinical Cronobacter sakazakii. Applied and Environmental Microbiology 87:24.
Crossref
Crossref
E.S. Milani, A. Hasani, M. Varschochi, J. Sadeghi, M.Y. Memar & A. Hasani. (2021) Biocide resistance in Acinetobacter baumannii: appraising the mechanisms. Journal of Hospital Infection 117, pages 135-146.
Crossref
Crossref
Adeel Farooq, Jungman Kim, Shahbaz Raza, Jeonghwan Jang, Dukki Han, Michael J. Sadowsky & Tatsuya Unno. (2021) A hybrid DNA sequencing approach is needed to properly link genotype to phenotype in multi-drug resistant bacteria. Environmental Pollution 289, pages 117856.
Crossref
Crossref
Karen Ross, Alessandro M. Varani, Erik Snesrud, Hongzhan Huang, Danillo Oliveira Alvarenga, Jian Zhang, Cathy Wu, Patrick McGann & Mick Chandler. (2021) TnCentral: a Prokaryotic Transposable Element Database and Web Portal for Transposon Analysis. mBio 12:5.
Crossref
Crossref
Qianying Ye, Chanjae Lee, Eunjung Shin & Sung-Jae Lee. (2021) Influence of Redox Imbalances on the Transposition of Insertion Sequences in Deinococcus geothermalis. Antioxidants 10:10, pages 1623.
Crossref
Crossref
Catherine R. Armbruster, Christopher W. Marshall, Arkadiy I. Garber, Jeffrey A. Melvin, Anna C. Zemke, John Moore, Paula F. Zamora, Kelvin Li, Ian L. Fritz, Christopher D. Manko, Madison L. Weaver, Jordan R. Gaston, Alison Morris, Barbara Methé, William H. DePas, Stella E. Lee, Vaughn S. Cooper & Jennifer M. Bomberger. (2021) Adaptation and genomic erosion in fragmented Pseudomonas aeruginosa populations in the sinuses of people with cystic fibrosis. Cell Reports 37:3, pages 109829.
Crossref
Crossref
Guillermo Gómez-García, Angel Ruiz-Enamorado, Luis Yuste, Fernando Rojo & Renata Moreno. (2021)
Expression of the ISPpu9 transposase of
Pseudomonas putida
KT2440 is regulated by two small RNAs and the secondary structure of the mRNA 5′-untranslated region
. Nucleic Acids Research 49:16, pages 9211-9228.
Crossref
Crossref
Warapond Wanna, Komwit Surachat, Panmile Kaitimonchai & Amornrat Phongdara. (2021) Evaluation of probiotic characteristics and whole genome analysis of Pediococcus pentosaceus MR001 for use as probiotic bacteria in shrimp aquaculture. Scientific Reports 11:1.
Crossref
Crossref
Chanjae Lee, Min K. Bae & Sung-Jae Lee. 2021. Antioxidants - Benefits, Sources, Mechanisms of Action. Antioxidants - Benefits, Sources, Mechanisms of Action.
Julie Zaworski, Oyut Dagva, Anthony W Kingston, Alexey Fomenkov, Richard D Morgan, Lionello Bossi & Elisabeth A Raleigh. (2021)
Genome archaeology of two laboratory
Salmonella enterica enterica
sv Typhimurium
. G3 Genes|Genomes|Genetics 11:9.
Crossref
Crossref
Popi Karaolia, Sotirios Vasileiadis, Stella G. Michael, Dimitrios G. Karpouzas & Despo Fatta-Kassinos. (2021) Shotgun metagenomics assessment of the resistome, mobilome, pathogen dynamics and their ecological control modes in full-scale urban wastewater treatment plants. Journal of Hazardous Materials 418, pages 126387.
Crossref
Crossref
Yi-Long Hao, Gang Li, Zu-Fei Xiao, Ning Liu, Muhammad Azeem, Yi Zhao, Yao-Yang Xu & Xin-Wei Yu. (2021) Distribution and Influence on the Microbial Ecological Relationship of Antibiotic Resistance Genes in Soil at a Watershed Scale. Sustainability 13:17, pages 9748.
Crossref
Crossref
Ruben V. Uribe, Christin Rathmer, Leonie Johanna Jahn, Mostafa Mostafa Hashim Ellabaan, Simone S. Li & Morten Otto Alexander Sommer. (2021) Bacterial resistance to CRISPR-Cas antimicrobials. Scientific Reports 11:1.
Crossref
Crossref
Gyles Ifill, Travis Blimkie, Amy Huei-Yi Lee, George A. Mackie, Qing Chen, Scott Stibitz, Robert E. W. Hancock & Rachel C. Fernandez. (2021) RNase III and RNase E Influence Posttranscriptional Regulatory Networks Involved in Virulence Factor Production, Metabolism, and Regulatory RNA Processing in Bordetella pertussis. mSphere 6:4.
Crossref
Crossref
Catherine Badel, Violette Da Cunha & Jacques Oberto. (2021) Archaeal tyrosine recombinases. FEMS Microbiology Reviews 45:4.
Crossref
Crossref
Ezequiel G Mogro, Nicolás M Ambrosis & Mauricio J Lozano. (2021) Easy identification of insertion sequence mobilization events in related bacterial strains with ISCompare. G3 Genes|Genomes|Genetics 11:8.
Crossref
Crossref
Daniel Castillo, Valentina L. Donati, Jóhanna Jørgensen, Krister Sundell, Inger Dalsgaard, Lone Madsen, Tom Wiklund & Mathias Middelboe. (2021) Comparative Genomic Analyses of Flavobacterium psychrophilum Isolates Reveals New Putative Genetic Determinants of Virulence Traits. Microorganisms 9:8, pages 1658.
Crossref
Crossref
Julian A. Paganini, Nienke L. Plantinga, Sergio Arredondo-Alonso, Rob J. L. Willems & Anita C. Schürch. (2021) Recovering Escherichia coli Plasmids in the Absence of Long-Read Sequencing Data. Microorganisms 9:8, pages 1613.
Crossref
Crossref
Katrine Nøhr-Meldgaard, Carsten Struve, Hanne Ingmer & Yvonne Agersø. (2021) The Tetracycline Resistance Gene, tet(W) in Bifidobacterium animalis subsp. lactis Follows Phylogeny and Differs From tet(W) in Other Species. Frontiers in Microbiology 12.
Crossref
Crossref
Guillermo Bahr, Lisandro J. González & Alejandro J. Vila. (2021) Metallo-β-lactamases in the Age of Multidrug Resistance: From Structure and Mechanism to Evolution, Dissemination, and Inhibitor Design. Chemical Reviews 121:13, pages 7957-8094.
Crossref
Crossref
Reem M. Hassan, Sherifa T. Salem, Saly Ismail Mostafa Hassan, Asmaa Sayed Hegab & Yasmine S. Elkholy. (2021) Molecular characterization of carbapenem-resistant Acinetobacter baumannii clinical isolates from Egyptian patients. PLOS ONE 16:6, pages e0251508.
Crossref
Crossref
Rekha Gopalan-Nair, Marie-Françoise Jardinaud, Ludovic Legrand, David Landry, Xavier Barlet, Céline Lopez-Roques, Céline Vandecasteele, Olivier Bouchez, Stéphane Genin & Alice Guidot. (2021)
Convergent Rewiring of the Virulence Regulatory Network Promotes Adaptation of
Ralstonia solanacearum
on Resistant Tomato
. Molecular Biology and Evolution 38:5, pages 1792-1808.
Crossref
Crossref
Hirokazu Suzuki, Tatsunari Taketani, Misaki Tanabiki, Misaki Ohara, Jyumpei Kobayashi & Takashi Ohshiro. (2021) Frequent Transposition of Multiple Insertion Sequences in Geobacillus kaustophilus HTA426. Frontiers in Microbiology 12.
Crossref
Crossref
S. Tansirichaiya, S.J. Moyo, M. Al‐Haroni & A.P. Roberts. (2020)
Capture of a novel, antibiotic resistance encoding, mobile genetic element from
Escherichia coli
using a new entrapment vector
. Journal of Applied Microbiology 130:3, pages 832-842.
Crossref
Crossref
Yisong Li, Zhong-Zhi Sun, Jin-Cheng Rong & Bin-Bin Xie. (2021) Comparative genomics reveals broad genetic diversity, extensive recombination and nascent ecological adaptation in Micrococcus luteus. BMC Genomics 22:1.
Crossref
Crossref
Rob Van Houdt, Joachim Vandecraen, Natalie Leys, Pieter Monsieurs & Abram Aertsen. (2021) Adaptation of Cupriavidus metallidurans CH34 to Toxic Zinc Concentrations Involves an Uncharacterized ABC-Type Transporter. Microorganisms 9:2, pages 309.
Crossref
Crossref
Kaloyan Petrov, Alexander Arsov & Penka Petrova. (2021) Butanol Tolerance of Lactiplantibacillus plantarum: A Transcriptome Study. Genes 12:2, pages 181.
Crossref
Crossref
William C Shropshire, Samuel L Aitken, Reed Pifer, Jiwoong Kim, Micah M Bhatti, Xiqi Li, Awdhesh Kalia, Jessica Galloway-Peña, Pranoti Sahasrabhojane, Cesar A Arias, David E Greenberg, Blake M Hanson & Samuel A Shelburne. (2021)
IS
26
-mediated amplification of
bla
OXA-1 and
bla
CTX-M-15 with concurrent outer membrane porin disruption associated with
de novo
carbapenem resistance in a recurrent bacteraemia cohort
. Journal of Antimicrobial Chemotherapy 76:2, pages 385-395.
Crossref
Crossref
Sherley Chamoun, Jenny Welander, Mihaela-Maria Martis-Thiele, Maria Ntzouni, Carina Claesson, Elena Vikström & Maria V. Turkina. (2021) Colistin Dependence in Extensively Drug-Resistant Acinetobacter baumannii Strain Is Associated with ISAjo2 and ISAba13 Insertions and Multiple Cellular Responses. International Journal of Molecular Sciences 22:2, pages 576.
Crossref
Crossref
Dalibor Kosek, Alison B Hickman, Rodolfo Ghirlando, Susu He & Fred Dyda. (2020)
Structures of
IS
C
th4
transpososomes reveal the role of asymmetry in copy‐out/paste‐in
DNA
transposition
. The EMBO Journal 40:1.
Crossref
Crossref
Stefan Ebmeyer, Erik Kristiansson & D. G. Joakim Larsson. (2021) A framework for identifying the recent origins of mobile antibiotic resistance genes. Communications Biology 4:1.
Crossref
Crossref
Chanjae Lee, Min K Bae, Nakjun Choi, Su Jeong Lee & Sung-Jae Lee. (2021)
Genome Plasticity by Insertion Sequences Learned From a Case of Radiation-Resistant Bacterium
Deinococcus geothermalis
. Bioinformatics and Biology Insights 15, pages 117793222110374.
Crossref
Crossref
Vanessa Oliveira, Ana R. M. Polónia, Daniel F. R. Cleary, Yusheng M. Huang, Nicole J. de Voogd, Ulisses N. da Rocha & Newton C. M. Gomes. (2020) Characterization of putative circular plasmids in sponge‐associated bacterial communities using a selective multiply‐primed rolling circle amplification. Molecular Ecology Resources 21:1, pages 110-121.
Crossref
Crossref
Markus H K Johansson, Valeria Bortolaia, Supathep Tansirichaiya, Frank M Aarestrup, Adam P Roberts & Thomas N Petersen. (2021)
Detection of mobile genetic elements associated with antibiotic resistance in
Salmonella enterica
using a newly developed web tool: MobileElementFinder
. Journal of Antimicrobial Chemotherapy 76:1, pages 101-109.
Crossref
Crossref
Dylan G. Maghini, Eli L. Moss, Summer E. Vance & Ami S. Bhatt. (2020) Improved high-molecular-weight DNA extraction, nanopore sequencing and metagenomic assembly from the human gut microbiome. Nature Protocols 16:1, pages 458-471.
Crossref
Crossref
Adrián Álvarez-Molina, María de Toro, Elena A. Alexa & Avelino Álvarez-Ordóñez. 2021. Comprehensive Foodomics. Comprehensive Foodomics
188
211
.
Pierre-Étienne Marcoux, Antony T. Vincent, Marie-Ange Massicotte, Valérie E. Paquet, Émilie J. Doucet, Nava Hosseini, Mélanie V. Trudel, Gabriel Byatt, Mathilde Laurent, Michel Frenette & Steve J. Charette. (2020) Systematic Analysis of the Stress-Induced Genomic Instability of Type Three Secretion System in Aeromonas salmonicida subsp. salmonicida. Microorganisms 9:1, pages 85.
Crossref
Crossref
Daniel Wibberg, Marian Price-Carter, Christian Rückert, Jochen Blom & Petra Möbius. (2020) Complete Genome Sequence of Ovine Mycobacterium avium subsp. paratuberculosis Strain JIII-386 (MAP-S/type III) and Its Comparison to MAP-S/type I, MAP-C, and M. avium Complex Genomes. Microorganisms 9:1, pages 70.
Crossref
Crossref
Yogandree Ramsamy, Koleka P. Mlisana, Daniel G. Amoako, Akebe Luther King Abia, Mushal Allam, Arshad Ismail, Ravesh Singh & Sabiha Y. Essack. (2020) Comparative Pathogenomics of Aeromonas veronii from Pigs in South Africa: Dominance of the Novel ST657 Clone. Microorganisms 8:12, pages 2008.
Crossref
Crossref
Chris Coward, Gopujara Dharmalingham, Omar Abdulle, Tim Avis, Stephan Beisken, Elena Breidenstein, Natasha Carli, Luis Figueiredo, David Jones, Nawaz Khan, Sara Malara, Joana Martins, Nabeetha Nagalingam, Keith Turner, John Wain, David Williams, David Powell & Clive Mason. (2020) High-density transposon libraries utilising outward-oriented promoters identify mechanisms of action and resistance to antimicrobials. FEMS Microbiology Letters 367:22.
Crossref
Crossref
Agnieszka Klonowska, Lionel Moulin, Julie Kaye Ardley, Florence Braun, Margaret Mary Gollagher, Jaco Daniel Zandberg, Dora Vasileva Marinova, Marcel Huntemann, T. B. K. Reddy, Neha Jacob Varghese, Tanja Woyke, Natalia Ivanova, Rekha Seshadri, Nikos Kyrpides & Wayne Gerald Reeve. (2020) Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil. BMC Genomics 21:1.
Crossref
Crossref
Ramón Cervantes-Rivera, Sophie Tronnet & Andrea Puhar. (2020) Complete genome sequence and annotation of the laboratory reference strain Shigella flexneri serotype 5a M90T and genome-wide transcriptional start site determination. BMC Genomics 21:1.
Crossref
Crossref
Hooman Derakhshani, Steve P. Bernier, Victoria A. Marko & Michael G. Surette. (2020) Completion of draft bacterial genomes by long-read sequencing of synthetic genomic pools. BMC Genomics 21:1.
Crossref
Crossref
Sabrina Montaña, Elisabet Vilacoba, Jennifer S. Fernandez, German M. Traglia, Adriana Sucari, Magdalena Pennini, Andres Iriarte, Daniela Centron, Roberto G. Melano & María Soledad Ramírez. (2020) Genomic analysis of two Acinetobacter baumannii strains belonging to two different sequence types (ST172 and ST25). Journal of Global Antimicrobial Resistance 23, pages 154-161.
Crossref
Crossref
Alexander Cambré & Abram Aertsen. (2020) Bacterial Vivisection: How Fluorescence-Based Imaging Techniques Shed a Light on the Inner Workings of Bacteria. Microbiology and Molecular Biology Reviews 84:4.
Crossref
Crossref
Chanjae Lee, Kyungsil Choo & Sung-Jae Lee. (2020) Active Transposition of Insertion Sequences by Oxidative Stress in Deinococcus geothermalis. Frontiers in Microbiology 11.
Crossref
Crossref
Pilar Vesga, Pascale Flury, Jordan Vacheron, Christoph Keel, Daniel Croll & Monika Maurhofer. (2020) Transcriptome plasticity underlying plant root colonization and insect invasion by Pseudomonas protegens. The ISME Journal 14:11, pages 2766-2782.
Crossref
Crossref
Mohammad Razavi, Erik Kristiansson, Carl-Fredrik Flach & D. G. Joakim Larsson. (2020) The Association between Insertion Sequences and Antibiotic Resistance Genes. mSphere 5:5.
Crossref
Crossref
Marcela Suárez-Esquivel, Esteban Chaves-Olarte, Edgardo Moreno & Caterina Guzmán-Verri. (2020) Brucella Genomics: Macro and Micro Evolution. International Journal of Molecular Sciences 21:20, pages 7749.
Crossref
Crossref
Francesco Riva, Valentina Riva, Ester M. Eckert, Noemi Colinas, Andrea Di Cesare, Sara Borin, Francesca Mapelli & Elena Crotti. (2020) An Environmental Escherichia coli Strain Is Naturally Competent to Acquire Exogenous DNA. Frontiers in Microbiology 11.
Crossref
Crossref
Shaun Ferguson, Anthony S. Major, John T. Sullivan, Scott D. Bourke, Simon J. Kelly, Benjamin J. Perry & Clive W. Ronson. (2020) Rhizobium leguminosarum bv. trifolii NodD2 Enhances Competitive Nodule Colonization in the Clover-Rhizobium Symbiosis. Applied and Environmental Microbiology 86:18.
Crossref
Crossref
Erwin SentausaPauline BassoAlice Berry, Annie Adrait, Gwendoline BellementYohann Couté, Stephen Lory, Sylvie Elsen & Ina Attrée. (2020) Insertion sequences drive the emergence of a highly adapted human pathogen. Microbial Genomics 6:9.
Crossref
Crossref
Lii-Tzu WuMing-Kai GuoSe-Chin KeYi-Pei LinYi-Chun PangHong-Thuy Vy NguyenChih-Ming Chen. (2020)
Characterization of the Genetic Background of KPC-2-Producing
Klebsiella pneumoniae
with Insertion Elements Disrupting the
ompK36
Porin Gene
. Microbial Drug Resistance 26:9, pages 1050-1057.
Crossref
Crossref
Mengxue Peng & Zhihong Liang. (2020) Degeneration of industrial bacteria caused by genetic instability. World Journal of Microbiology and Biotechnology 36:8.
Crossref
Crossref
Darya Belikova, Angelika Jochim, Jeffrey Power, Matthew T. G. Holden & Simon Heilbronner. (2020) “Gene accordions” cause genotypic and phenotypic heterogeneity in clonal populations of Staphylococcus aureus. Nature Communications 11:1.
Crossref
Crossref
David M. P. De Oliveira, Brian M. Forde, Timothy J. Kidd, Patrick N. A. Harris, Mark A. Schembri, Scott A. Beatson, David L. Paterson & Mark J. Walker. (2020) Antimicrobial Resistance in ESKAPE Pathogens. Clinical Microbiology Reviews 33:3.
Crossref
Crossref
Charlotte Couchoud, Xavier Bertrand, Benoit Valot & Didier Hocquet. (2020) Deciphering the role of insertion sequences in the evolution of bacterial epidemic pathogens with panISa software. Microbial Genomics 6:6.
Crossref
Crossref
Lucie Peyclit, Maryem Ben Khedher, Lotfi Zerrouki, Seydina M Diene, Sophie Alexandra Baron & Jean-Marc Rolain. (2020) Inactivation of thymidine kinase as a cause of resistance to zidovudine in clinical isolates of Escherichia coli: a phenotypic and genomic study. Journal of Antimicrobial Chemotherapy 75:6, pages 1410-1414.
Crossref
Crossref
Karina Ramijan, Zheren Zhang, Gilles P. van Wezel & Dennis Claessen. (2020) Genome rearrangements and megaplasmid loss in the filamentous bacterium Kitasatospora viridifaciens are associated with protoplast formation and regeneration. Antonie van Leeuwenhoek 113:6, pages 825-837.
Crossref
Crossref
Zachary D Blount, Rohan Maddamsetti, Nkrumah A Grant, Sumaya T Ahmed, Tanush Jagdish, Jessica A Baxter, Brooke A Sommerfeld, Alice Tillman, Jeremy Moore, Joan L Slonczewski, Jeffrey E Barrick & Richard E Lenski. (2020) Genomic and phenotypic evolution of Escherichia coli in a novel citrate-only resource environment. eLife 9.
Crossref
Crossref
Subhojit Datta, Dipnarayan Saha, Lipi Chattopadhyay & Bijan Majumdar. (2020) Genome Comparison Identifies Different Bacillus Species in a Bast Fibre-Retting Bacterial Consortium and Provides Insights into Pectin Degrading Genes. Scientific Reports 10:1.
Crossref
Crossref
Corneliu Ovidiu Vrancianu, Laura Ioana Popa, Coralia Bleotu & Mariana Carmen Chifiriuc. (2020) Targeting Plasmids to Limit Acquisition and Transmission of Antimicrobial Resistance. Frontiers in Microbiology 11.
Crossref
Crossref
Osiel Silva Gonçalves, Kiara França Campos, Jéssica Catarine Silva de Assis, Alexia Suellen Fernandes, Thamires Santos Souza, Luiz Guilherme do Carmo Rodrigues, Marisa Vieira de Queiroz & Mateus Ferreira Santana. (2020) Transposable elements contribute to the genome plasticity of Ralstonia solanacearum species complex. Microbial Genomics 6:5.
Crossref
Crossref
Lei Cheng, Di Min, Dong-Feng Liu, Ting-Ting Zhu, Kai-Li Wang & Han-Qing Yu. (2020) Deteriorated biofilm-forming capacity and electroactivity of Shewanella oneidnsis MR-1 induced by insertion sequence (IS) elements. Biosensors and Bioelectronics 156, pages 112136.
Crossref
Crossref
Signe Viggor, Merike Jõesaar, Pedro Soares-Castro, Tanel Ilmjärv, Pedro M. Santos, Atya Kapley & Maia Kivisaar. (2020) Microbial Metabolic Potential of Phenol Degradation in Wastewater Treatment Plant of Crude Oil Refinery: Analysis of Metagenomes and Characterization of Isolates. Microorganisms 8:5, pages 652.
Crossref
Crossref
Nicolas Kieffer, Laurent Poirel, Linda Mueller, Stefano Mancini & Patrice Nordmann. (2020)
IS
Ecp1
-Mediated Transposition Leads to Fosfomycin and Broad-Spectrum Cephalosporin Resistance in Klebsiella pneumoniae
. Antimicrobial Agents and Chemotherapy 64:5.
Crossref
Crossref
Soumya Paul, Bhavani Venkataswamachari Peddayelachagiri, Madhurjya Gogoi, Sowmya Nagaraj, Shylaja Ramlal, Balakrishna Konduru & Harsh V. Batra. (2020) Genome-wide unique insertion sequences among five Brucella species and demonstration of differential identification of Brucella by multiplex PCR assay. Scientific Reports 10:1.
Crossref
Crossref
Yuliya Bocharova, Tatiana Savinova, Anna Lazareva, Svetlana Polikarpova, Nataliya Gordinskaya, Nikolay Mayanskiy & Igor Chebotar. (2020) Genotypes, carbapenemase carriage, integron diversity and oprD alterations among carbapenem-resistant Pseudomonas aeruginosa from Russia. International Journal of Antimicrobial Agents 55:4, pages 105899.
Crossref
Crossref
Pilar Menendez-Gil, Carlos J Caballero, Arancha Catalan-Moreno, Naiara Irurzun, Inigo Barrio-Hernandez, Isabelle Caldelari & Alejandro Toledo-Arana. (2020) Differential evolution in 3′UTRs leads to specific gene expression in Staphylococcus. Nucleic Acids Research 48:5, pages 2544-2563.
Crossref
Crossref
Urška Ribič, Jernej Jakše, Nataša Toplak, Simon Koren, Minka Kovač, Anja Klančnik & Barbara Jeršek. (2020) Transporters and Efflux Pumps Are the Main Mechanisms Involved in Staphylococcus epidermidis Adaptation and Tolerance to Didecyldimethylammonium Chloride. Microorganisms 8:3, pages 344.
Crossref
Crossref
Leandro Pio de Sousa. (2019) Mobile Genetic Elements in Pseudomonas stutzeri. Current Microbiology 77:2, pages 179-184.
Crossref
Crossref
Yogandree Ramsamy, Koleka P. Mlisana, Daniel G. Amoako, Mushal Allam, Arshad Ismail, Ravesh Singh, Akebe Luther King Abia & Sabiha Y. Essack. (2020) Pathogenomic Analysis of a Novel Extensively Drug-Resistant Citrobacter freundii Isolate Carrying a blaNDM-1 Carbapenemase in South Africa. Pathogens 9:2, pages 89.
Crossref
Crossref
Samantha Mc Carlie, Charlotte E. Boucher & Robert R. Bragg. (2020) Molecular basis of bacterial disinfectant resistance. Drug Resistance Updates 48, pages 100672.
Crossref
Crossref
Y.-J. Kim, S. Kim, J. Kim & S. Bae. (2020) Tracking short-term changes in the genetic diversity and antimicrobial resistance of OXA-232-producing Klebsiella pneumoniae ST14 in clinical settings. Clinical Microbiology and Infection 26:1, pages 78-86.
Crossref
Crossref
Belén Calles, Ángel Goñi‐Moreno & Víctor de Lorenzo. (2019) Digitalizing heterologous gene expression in Gram‐negative bacteria with a portable ON/OFF module. Molecular Systems Biology 15:12.
Crossref
Crossref
Kristel Mijnendonckx, Md Muntasir Ali, Ann Provoost, Paul Janssen, Max Mergeay, Natalie Leys, Daniël Charlier, Pieter Monsieurs & Rob Van Houdt. (2019)
Spontaneous mutation in the AgrRS two-component regulatory system of
Cupriavidus metallidurans
results in enhanced silver resistance
. Metallomics 11:11, pages 1912-1924.
Crossref
Crossref
Carolina Hoyos-Hernandez, Christelle Courbert, Caroline Simonucci, Sebastien David, Timothy M Vogel & Catherine Larose. (2019) Community structure and functional genes in radionuclide contaminated soils in Chernobyl and Fukushima. FEMS Microbiology Letters 366:21.
Crossref
Crossref
Sáenz, Airo, Schulze-Makuch, Schloter & Vestergaard. (2019) Functional Traits Co-Occurring with Mobile Genetic Elements in the Microbiome of the Atacama Desert. Diversity 11:11, pages 205.
Crossref
Crossref
Chanjae Lee, Nakjun Choi, Min K. Bae, Kyungsil Choo & Sung-Jae Lee. (2019) Transposition of Insertion Sequences was Triggered by Oxidative Stress in Radiation-Resistant Bacterium Deinococcus geothermalis. Microorganisms 7:10, pages 446.
Crossref
Crossref
Qianqian Gao, Xiaobin Meng, Hanfu Gu, Xueqin Chen, Huaqing Yang, Yangyang Qiao & Xuemin Guo. (2019) Two Phenotype-Differentiated Acinetobacter baumannii Mutants That Survived in a Meropenem Selection Display Large Differences in Their Transcription Profiles. Frontiers in Microbiology 10.
Crossref
Crossref
Shahd Ezzeldin, Aya El-Wazir, Shymaa Enany, Abdelrahman Muhammad, Dina Johar, Aya Osama, Eman Ahmed, Hassan Shikshaky & Sameh Magdeldin. (2019) Current Understanding of Human Metaproteome Association and Modulation. Journal of Proteome Research 18:10, pages 3539-3554.
Crossref
Crossref
Catherine Fan, Yin-Hu Wu, Christoph M. Decker, Reza Rohani, Manuela Gesell Salazar, Hua Ye, Zhanfeng Cui, Frank Schmidt & Wei E. Huang. (2019) Defensive Function of Transposable Elements in Bacteria. ACS Synthetic Biology 8:9, pages 2141-2151.
Crossref
Crossref
Christoph Josi, Sibylle Bürki, Sara Vidal, Emilie Dordet-Frisoni, Christine Citti, Laurent Falquet & Paola Pilo. (2019) Large-Scale Analysis of the Mycoplasma bovis Genome Identified Non-essential, Adhesion- and Virulence-Related Genes. Frontiers in Microbiology 10.
Crossref
Crossref
Michal Werbner, Yiftah Barsheshet, Nir Werbner, Mor Zigdon, Itamar Averbuch, Oren Ziv, Boris Brant, Evan Elliott, Shachaf Gelberg, Moran Titelbaum, Omry Koren & Orly Avni. (2019) Social-Stress-Responsive Microbiota Induces Stimulation of Self-Reactive Effector T Helper Cells. mSystems 4:4.
Crossref
Crossref
Saswati Biswas, Andrew Keightley & Indranil Biswas. (2019)
Characterization of a stress tolerance‐defective mutant of
Lactobacillus rhamnosus
LRB
. Molecular Oral Microbiology 34:4, pages 153-167.
Crossref
Crossref
Sébastien Levesque, Alessandra G. de Melo, Simon J. Labrie & Sylvain Moineau. (2019) Mobilome of Brevibacterium aurantiacum Sheds Light on Its Genetic Diversity and Its Adaptation to Smear-Ripened Cheeses. Frontiers in Microbiology 10.
Crossref
Crossref
Yuliya Bocharova, Tatiana Savinova, Dmitriy A. Shagin, Andrey A. Shelenkov, Nikolay A. Mayanskiy & Igor V. Chebotar. (2019) Inactivation of the oprD porin gene by a novel insertion sequence ISPa195 associated with large deletion in a carbapenem-resistant Pseudomonas aeruginosa clinical isolate. Journal of Global Antimicrobial Resistance 17, pages 309-311.
Crossref
Crossref
Farahnaz Pahlavanzadeh, Davood Kalantar-Neyestanaki, Mohammad Motamedifar, Mohammad Savari & Shahla Mansouri. (2019) First detection of insertion sequences ISpa1635 and IS1411 among non-carbapenemase producing strains of Pseudomonas aeruginosa in Kerman, Iran. Gene Reports 15, pages 100373.
Crossref
Crossref
Peng Geng, Sean P. Leonard, Dennis M. Mishler & Jeffrey E. Barrick. (2019) Synthetic Genome Defenses against Selfish DNA Elements Stabilize Engineered Bacteria against Evolutionary Failure. ACS Synthetic Biology 8:3, pages 521-531.
Crossref
Crossref
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