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RNA Biology Volume 17, 2020 - Issue 7
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Research Paper

ncRPheno: a comprehensive database platform for identification and validation of disease related noncoding RNAs

Wenliang Zhanga Zhongshan School of Medicine, Sun Yat-sen University, Guangzhou, ChinaORCID Iconhttps://orcid.org/0000-0003-0454-6935View further author information
ORCID Icon,
Guocai Yaoa Zhongshan School of Medicine, Sun Yat-sen University, Guangzhou, ChinaORCID Iconhttps://orcid.org/0000-0002-9869-5124View further author information
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Jianbo Wanga Zhongshan School of Medicine, Sun Yat-sen University, Guangzhou, ChinaORCID Iconhttps://orcid.org/0000-0003-3916-3678View further author information
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Minglei Yanga Zhongshan School of Medicine, Sun Yat-sen University, Guangzhou, ChinaORCID Iconhttps://orcid.org/0000-0001-9957-7608View further author information
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Jing Wangb School of Data and Computer Science, Sun Yat-sen University, Guangzhou, ChinaORCID Iconhttps://orcid.org/0000-0001-7048-3472View further author information
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Haiyue Zhanga Zhongshan School of Medicine, Sun Yat-sen University, Guangzhou, ChinaORCID Iconhttps://orcid.org/0000-0002-7143-9550View further author information
ORCID Icon &
Weizhong Lia Zhongshan School of Medicine, Sun Yat-sen University, Guangzhou, China;c Center for Precision Medicine, Sun Yat-sen University, Guangzhou, China;d Key Laboratory of Tropical Disease Control, Sun Yat-Sen University, Ministry of Education, ChinaCorrespondence[email protected]
ORCID Iconhttps://orcid.org/0000-0002-9003-7733View further author information
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Pages 943-955 | Received 18 Oct 2019, Accepted 25 Feb 2020, Published online: 26 Mar 2020

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Byapti Ghosh, Arijita Sarkar, Sudip Mondal, Namrata Bhattacharya, Sunirmal Khatua & Zhumur Ghosh. (2022) piRNAQuest V.2: an updated resource for searching through the piRNAome of multiple species. RNA Biology 19:1, pages 12-25.
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Wenliang Zhang, Binghui Zeng, Huancai Lin, Wen Guan, Jing Mo, Song Wu, Yanjie Wei, Qianshen Zhang, Dongsheng Yu, Weizhong Li & Godfrey Chi-Fung Chan. (2021) CanImmunother: a manually curated database for identification of cancer immunotherapies associating with biomarkers, targets, and clinical effects. OncoImmunology 10:1.
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Jens Allmer. (2023) Noncoding RNA Databases. Current Pharmaceutical Biotechnology 24:7, pages 825-831.
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Manal S. Fawzy, Afaf T. Ibrahiem, Naglaa A. Bayomy, Amin K. Makhdoom, Khalid S. Alanazi, Abdulaziz M. Alanazi, Abdulaziz M. Mukhlef & Eman A. Toraih. (2023) MicroRNA-155 and Disease-Related Immunohistochemical Parameters in Cutaneous Melanoma. Diagnostics 13:6, pages 1205.
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Jia Chen, Jiahao Lin, Yongfei Hu, Meijun Ye, Linhui Yao, Le Wu, Wenhai Zhang, Meiyi Wang, Tingting Deng, Feng Guo, Yan Huang, Bofeng Zhu & Dong Wang. (2023) RNADisease v4.0: an updated resource of RNA-associated diseases, providing RNA-disease analysis, enrichment and prediction. Nucleic Acids Research 51:D1, pages D1397-D1404.
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Jialu Hou, Hang Wei & Bin Liu. (2022) iPiDA-GCN: Identification of piRNA-disease associations based on Graph Convolutional Network. PLOS Computational Biology 18:10, pages e1010671.
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Eman A. Toraih, Mohammad H. Hussein, Manal S. Fawzy & Emad Kandil. (2022) A Review and In Silico Analysis of Tissue and Exosomal Circular RNAs: Opportunities and Challenges in Thyroid Cancer. Cancers 14:19, pages 4728.
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Tianjiao Zhang, Liang Chen, Rongzhen Li, Ning Liu, Xiaobing Huang & Garry Wong. (2022) PIWI-interacting RNAs in human diseases: databases and computational models. Briefings in Bioinformatics 23:4.
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Wenliang Zhang, Yang Liu, Zhuochao Min, Guodong Liang, Jing Mo, Zhen Ju, Binghui Zeng, Wen Guan, Yan Zhang, Jianliang Chen, Qianshen Zhang, Hanguang Li, Chunxia Zeng, Yanjie Wei & Godfrey Chi-Fung Chan. (2022) circMine: a comprehensive database to integrate, analyze and visualize human disease–related circRNA transcriptome. Nucleic Acids Research 50:D1, pages D83-D92.
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Eman A. Toraih, Jessica A. Sedhom, Muhib Haidari & Manal S. Fawzy. 2022. Clinical Applications of Non-Coding RNAs in Cancer. Clinical Applications of Non-Coding RNAs in Cancer 211 284 .
Yurong Qian, Qihua He & Lei Deng. (2021) iPiDA-GBNN:Identification of Piwi-interacting RNA-disease associations based on gradient boosting neural network. iPiDA-GBNN:Identification of Piwi-interacting RNA-disease associations based on gradient boosting neural network.
Dayun Liu, Yi Luo, Jingjing Zheng, Hanlin Xu, Jiaxuan Zhang & Lei Deng. (2021) GCNSDA: Predicting snoRNA-disease associations via graph convolutional network. GCNSDA: Predicting snoRNA-disease associations via graph convolutional network.
Julia Micheel, Aram Safrastyan & Damian Wollny. (2021) Advances in Non-Coding RNA Sequencing. Non-Coding RNA 7:4, pages 70.
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Hyeseon Jeong, Kyung Hwan Park, Yuri Lee, Ayoung Jeong, Sooji Choi & Kyung Won Kim. (2021) The Regulation and Role of piRNAs and PIWI Proteins in Cancer. Processes 9:7, pages 1208.
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Yajun Liu, Aimin Li, Guo Xie, Guangming Liu & Xinhong Hei. (2021) Computational Methods and Online Resources for Identification of piRNA-Related Molecules. Interdisciplinary Sciences: Computational Life Sciences 13:2, pages 176-191.
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Wenliang Zhang, Binghui Zeng, Minglei Yang, Huan Yang, Jianbo Wang, Yongjie Deng, Haiyue Zhang, Guocai Yao, Song Wu & Weizhong Li. (2021) ncRNAVar: A Manually Curated Database for Identification of Noncoding RNA Variants Associated with Human Diseases. Journal of Molecular Biology 433:11, pages 166727.
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Lin Ning, Tianyu Cui, Boyang Zheng, Nuo Wang, Jiaxin Luo, Beilei Yang, Mengze Du, Jun ChengYiying Dou & Dong Wang. (2021) MNDR v3.0: mammal ncRNA–disease repository with increased coverage and annotation. Nucleic Acids Research 49:D1, pages D160-D164.
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Jianwei Li, Duanyang Wang, Zhenwu Yang & Ming Liu. (2021) HEGANLDA: a computational model for predicting potential lncRNA-disease associations based on multiple heterogeneous networks. IEEE/ACM Transactions on Computational Biology and Bioinformatics, pages 1-1.
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Naiade Calanca, Cecilie Abildgaard, Cláudia Aparecida Rainho & Silvia Regina Rogatto. (2020) The Interplay between Long Noncoding RNAs and Proteins of the Epigenetic Machinery in Ovarian Cancer. Cancers 12:9, pages 2701.
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Deepak Balamurali & Monika Stoll. (2020) Non-Coding RNA Databases in Cardiovascular Research. Non-Coding RNA 6:3, pages 35.
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