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Autophagy Volume 14, 2018 - Issue 6
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Research Paper - Basic Science

Delipidation of mammalian Atg8-family proteins by each of the four ATG4 proteases

Karlina J. KauffmanDepartment of Cell Biology, Yale University School of Medicine, New Haven, CT, USAView further author information
,
Shenliang YuDepartment of Cell Biology, Yale University School of Medicine, New Haven, CT, USAView further author information
,
Jiaxin JinDepartment of Cell Biology, Yale University School of Medicine, New Haven, CT, USA;Lanzhou University Second Hospital, Lanzhou, Gansu Province, ChinaView further author information
,
Brian MugoDepartment of Cell Biology, Yale University School of Medicine, New Haven, CT, USAView further author information
,
Nathan NguyenDepartment of Cell Biology, Yale University School of Medicine, New Haven, CT, USAView further author information
,
Aidan O'BrienDepartment of Cell Biology, Yale University School of Medicine, New Haven, CT, USAView further author information
,
Shanta NagDepartment of Cell Biology, Yale University School of Medicine, New Haven, CT, USAView further author information
,
Alf Håkon LystadDepartment of Molecular Medicine, Institute of Basic Medical Sciences, University of Oslo, NorwayView further author information
&
Thomas J. MeliaDepartment of Cell Biology, Yale University School of Medicine, New Haven, CT, USACorrespondence[email protected]
View further author information
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Pages 992-1010 | Received 24 Jul 2017, Accepted 22 Jan 2018, Published online: 10 Apr 2018

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Elif Begüm Gökerküçük, Angélique Cheron, Marc Tramier & Giulia Bertolin. (2023) The LC3B FRET biosensor monitors the modes of action of ATG4B during autophagy in living cells. Autophagy 19:8, pages 2275-2295.
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Rupali Gund & Angela M. Christiano. (2023) Impaired autophagy promotes hair loss in the C3H/HeJ mouse model of alopecia areata. Autophagy 19:1, pages 296-305.
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Xue Huang, Jia Yao, Lu Liu, Yu Luo & Aimin Yang. (2022) Atg8–PE protein-based in vitro biochemical approaches to autophagy studies. Autophagy 18:9, pages 2020-2035.
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Vikramjit Lahiri & Daniel J. Klionsky. (2021) ATG4-family proteins drive phagophore growth independently of the LC3/GABARAP lipidation system. Autophagy 17:6, pages 1293-1295.
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Hyun-Kyu An, Kyung Min Chung, Hyunhee Park, Jihyun Hong, Ji-Eun Gim, Hyosun Choi, Ye Won Lee, Jieun Choi, Ji Young Mun & Seong-Woon Yu. (2020) CASP9 (caspase 9) is essential for autophagosome maturation through regulation of mitochondrial homeostasis. Autophagy 16:9, pages 1598-1617.
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Alexander Agrotis, Niccolo Pengo, Jemima J. Burden & Robin Ketteler. (2019) Redundancy of human ATG4 protease isoforms in autophagy and LC3/GABARAP processing revealed in cells. Autophagy 15:6, pages 976-997.
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Olga A. Mareninova, Sophie R. Gretler, Grace E. Lee, Michael Pimienta, Yueqiu Qin, Jason M. Elperin, Jinliang Ni, Zsolt Razga, Anna S. Gukovskaya & Ilya Gukovsky. (2023) Ethanol inhibits pancreatic acinar cell autophagy through upregulation of ATG4B, mediating pathological responses of alcoholic pancreatitis. American Journal of Physiology-Gastrointestinal and Liver Physiology 325:3, pages G265-G278.
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Jose L. Nieto-Torres, Sviatlana Zaretski, Tianhui Liu, Peter D. Adams & Malene Hansen. (2023) Post-translational modifications of ATG8 proteins – an emerging mechanism of autophagy control. Journal of Cell Science 136:16.
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Taryn J. Olivas, Yumei Wu, Shenliang Yu, Lin Luan, Peter Choi, Emily D. Guinn, Shanta Nag, Pietro V. De Camilli, Kallol Gupta & Thomas J. Melia. (2023) ATG9 vesicles comprise the seed membrane of mammalian autophagosomes. Journal of Cell Biology 222:7.
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Steven Edward Reid, Srinivasa Prasad Kolapalli, Thorbjørn M. Nielsen & Lisa B. Frankel. (2022) Canonical and non-canonical roles for ATG8 proteins in autophagy and beyond. Frontiers in Molecular Biosciences 9.
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Yinyan Tang, Amber Kay, Ziwen Jiang & Michelle R. Arkin. (2022) LC3B Binds to the Autophagy Protease ATG4b with High Affinity Using a Bipartite Interface. Biochemistry 61:21, pages 2295-2302.
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Na Yeon Park, Doo Sin Jo & Dong-Hyung Cho. (2022) Post-Translational Modifications of ATG4B in the Regulation of Autophagy. Cells 11:8, pages 1330.
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Benjamin Friedman, Carmen Corciulo, Cristina M. Castro & Bruce N. Cronstein. (2021) Adenosine A2A receptor signaling promotes FoxO associated autophagy in chondrocytes. Scientific Reports 11:1.
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E. S. Petenyova, A. B. Salmina, S. I. Berdnikov, V. V. Salmin, V. G. Abramov, N. N. Medvedeva & E. V. Semichev. (2021) Barrett’s esophagus and esophageal adenocarcinoma: biomarkers of proliferation, apoptosis, autophagy and angiogenesis. Bulletin of Siberian Medicine 19:4, pages 226-234.
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Natalia Jimenez-Moreno & Jon D. Lane. (2020) Autophagy and Redox Homeostasis in Parkinson’s: A Crucial Balancing Act. Oxidative Medicine and Cellular Longevity 2020, pages 1-38.
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Sang-Won Park, Yong-Woo Jun, Pureum Jeon, You-Kyung Lee, Ju-Hui Park, Seung-Hwan Lee, Jin-A Lee & Deok-Jin Jang. (2019) LIR motifs and the membrane-targeting domain are complementary in the function of RavZ. BMB Reports 52:12, pages 700-705.
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Agrotis & Ketteler. (2019) On ATG4B as Drug Target for Treatment of Solid Tumours—The Knowns and the Unknowns. Cells 9:1, pages 53.
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Eleanor R. Stead, Jorge I. Castillo-Quan, Victoria Eugenia Martinez Miguel, Celia Lujan, Robin Ketteler, Kerri J. Kinghorn & Ivana Bjedov. (2019) Agephagy – Adapting Autophagy for Health During Aging. Frontiers in Cell and Developmental Biology 7.
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Christian Seca, Alessandra Ferraresi, Suratchanee Phadngam, Chiara Vidoni & Ciro Isidoro. (2019) Autophagy-dependent toxicity of amino-functionalized nanoparticles in ovarian cancer cells. Journal of Materials Chemistry B 7:35, pages 5376-5391.
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Lystad & Simonsen. (2019) Mechanisms and Pathophysiological Roles of the ATG8 Conjugation Machinery. Cells 8:9, pages 973.
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Satish Babu Moparthi & Thomas Wollert. (2019) Reconstruction of destruction – in vitro reconstitution methods in autophagy research . Journal of Cell Science 132:4.
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Jagan Mohan & Thomas Wollert. (2018) Human ubiquitin-like proteins as central coordinators in autophagy. Interface Focus 8:5, pages 20180025.
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Baris Bingol. (2018) Autophagy and lysosomal pathways in nervous system disorders. Molecular and Cellular Neuroscience 91, pages 167-208.
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Mariana Maciel, Daniel Hernández-Barrientos, Iliana Herrera, Moisés Selman, Annie Pardo & Sandra Cabrera. (2018) Impaired autophagic activity and ATG4B deficiency are associated with increased endoplasmic reticulum stress-induced lung injury. Aging 10:8, pages 2098-2112.
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D. Bosc, L. Vezenkov, S. Bortnik, J. An, J. Xu, C. Choutka, A. M. Hannigan, S. Kovacic, S. Loo, P. G. K. Clark, G. Chen, R. N. Guay-Ross, K. Yang, W. H. Dragowska, F. Zhang, N. E. Go, A. Leung, N. S. Honson, T. A. Pfeifer, M. Gleave, M. Bally, S. J. Jones, S. M. Gorski & R. N. Young. (2018) A new quinoline-based chemical probe inhibits the autophagy-related cysteine protease ATG4B. Scientific Reports 8:1.
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