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Epigenetics Volume 15, 2020 - Issue 1-2
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Research Paper

Battle of epigenetic proportions: comparing Illumina’s EPIC methylation microarrays and TruSeq targeted bisulfite sequencing

Jonathan A. HeissDepartment of Environmental Medicine and Public Health, Icahn School of Medicine at Mount Sinai, New York, NY, USACorrespondence[email protected]
ORCID Iconhttps://orcid.org/0000-0003-1448-2509View further author information
ORCID Icon,
Kasey J. BrennanDepartment of Environmental Health Sciences, Mailman School of Public Health, Columbia University Medical Center, New York, NY, USAView further author information
,
Andrea A. BaccarelliDepartment of Environmental Health Sciences, Mailman School of Public Health, Columbia University Medical Center, New York, NY, USAView further author information
,
Martha M. Téllez-RojoCenter for Nutrition and Health Research, National Institute of Public Health, Cuernavaca, MexicoView further author information
,
Guadalupe Estrada-GutiérrezNational Institute of Perinatology, Mexico City, MexicoORCID Iconhttps://orcid.org/0000-0001-9551-9021View further author information
ORCID Icon,
Robert O. WrightDepartment of Environmental Medicine and Public Health, Icahn School of Medicine at Mount Sinai, New York, NY, USAView further author information
&
Allan C. JustDepartment of Environmental Medicine and Public Health, Icahn School of Medicine at Mount Sinai, New York, NY, USAORCID Iconhttps://orcid.org/0000-0003-4312-5957View further author information
ORCID Icon show all
Pages 174-182 | Received 17 Apr 2019, Accepted 08 Aug 2019, Published online: 05 Sep 2019

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Olivia Strunge Meyer, Mikkel Meyer Andersen, Claus Børsting, Niels Morling, Hans Christian Wulf, Peter Alshede Philipsen, Catharina Margrethe Lerche & Jeppe Dyrberg Andersen. (2023) Comparison of global DNA methylation analysis by whole genome bisulfite sequencing and the Infinium Mouse Methylation BeadChip using fresh and fresh-frozen mouse epidermis. Epigenetics 18:1.
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Dennis Khodasevich, Anna R. Smith, Karen Huen, Brenda Eskenazi, Andres Cardenas & Nina Holland. (2022) Comparison of DNA methylation measurements from EPIC BeadChip and SeqCap targeted bisulphite sequencing in PON1 and nine additional candidate genes. Epigenetics 17:13, pages 1944-1955.
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Nan Lin, Jinpeng Liu, James Castle, Jun Wan, Aditi Shendre, Yunlong Liu, Chi Wang & Chunyan He. (2021) Genome-wide DNA methylation profiling in human breast tissue by Illumina TruSeq methyl capture EPIC sequencing and infinium methylationEPIC beadchip microarray. Epigenetics 16:7, pages 754-769.
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Qinghua You, Yuanyuan Geng, Huiying Ye, Guixiang Zhu, Xiaofang Gao & Hongbo Zhu. (2020) HOPX Is an Epigenetically Inactivated Tumor Suppressor and Overexpression of HOPX Induce Apoptosis and Cell Cycle Arrest in Breast Cancer. OncoTargets and Therapy 13, pages 5955-5965.
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Kelly M. Bakulski, Freida Blostein & Stephanie J. London. (2023) Linking Prenatal Environmental Exposures to Lifetime Health with Epigenome-Wide Association Studies: State-of-the-Science Review and Future Recommendations. Environmental Health Perspectives 131:12.
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Cristiana Banila, Daniel Green, Dimitris Katsanos, Joana Viana, Alice Osmaston, Angel Menendez Vazquez, Magnus Lynch & Shakiba Kaveh. (2023) A noninvasive method for whole-genome skin methylome profiling. British Journal of Dermatology 189:6, pages 750-759.
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Kai Fu Jhuang, Man Lun Hsu, Yu‐Chia Chen, Jan‐Growth Chang & Moncef Zouali. (2023) DNA methylation trajectories during innate and adaptive immune responses of human B lymphocytes. Immunology 169:3, pages 344-357.
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Elizabeth M Martin, Sara A Grimm, Zongli Xu, Jack A Taylor & Paul A Wade. (2023) Beadchip technology to detect DNA methylation in mouse faithfully recapitulates whole-genome bisulfite sequencing. Epigenomics 15:3, pages 115-129.
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Jon Bohlin, Christian M. Page, Yunsung Lee, John H.-O. Pettersson, Astanand Jugessur, Per Magnus & Siri E. Håberg. (2022) Age and sex effects on DNA methylation sites linked to genes implicated in severe COVID-19 and SARS-CoV-2 host cell entry. PLOS ONE 17:6, pages e0269105.
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Karen J. Mathewson, Patrick O. McGowan, Wilfred C. de Vega, Ryan J. Van Lieshout, Katherine M. Morrison, Saroj Saigal & Louis A. Schmidt. (2020) DNA methylation profiles in adults born at extremely low birth weight. Development and Psychopathology 34:1, pages 19-36.
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Jochen Kruppa, Miriam Sieg, Gesa Richter & Anne Pohrt. (2021) Estimands in epigenome-wide association studies. Clinical Epigenetics 13:1.
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Dorothea Seiler Vellame, Isabel Castanho, Aisha Dahir, Jonathan Mill & Eilis Hannon. (2021) Characterizing the properties of bisulfite sequencing data: maximizing power and sensitivity to identify between-group differences in DNA methylation. BMC Genomics 22:1.
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Trevor R. Murphy, Rui Xiao & Scott D. Hamilton-Brehm. (2021) Hybrid genome de novo assembly with methylome analysis of the anaerobic thermophilic subsurface bacterium Thermanaerosceptrum fracticalcis strain DRI-13T. BMC Genomics 22:1.
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B Penova-Veselinovic, P E Melton, R C Huang, J L Yovich, P Burton, L A Wijs & R J Hart. (2021) DNA methylation patterns within whole blood of adolescents born from assisted reproductive technology are not different from adolescents born from natural conception. Human Reproduction 36:7, pages 2035-2049.
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Fabien Pichon, Yimin Shen, Florence Busato, Simon P Jochems, Beatrice Jacquelin, Roger Le GrandJean-Francois Deleuze, Michaela Müller-Trutwin & Jörg Tost. (2021) Analysis and annotation of DNA methylation in two nonhuman primate species using the Infinium Human Methylation 450K and EPIC BeadChips. Epigenomics 13:3, pages 169-186.
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Maarten Vanhaverbeke & Benedetta Izzi. 2021. Epigenetics in Cardiovascular Disease. Epigenetics in Cardiovascular Disease 261 281 .
Chang Shu, Xinyu Zhang, Bradley E. Aouizerat & Ke Xu. (2020) Comparison of methylation capture sequencing and Infinium MethylationEPIC array in peripheral blood mononuclear cells. Epigenetics & Chromatin 13:1.
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Dafina Ilijazi, Walter Pulverer, Iris E. Ertl, Ursula Lemberger, Shoji Kimura, Mohammad Abufaraj, David D’Andrea, Benjamin Pradere, Andreas Bruchbacher, Anna Graf, Francesco Soria, Martin Susani, Andrea Haitel, Luca Molinaro, Armin Pycha, Evi Comploj, Stephan Pabinger, Andreas Weinhäusel, Gerda Egger, Shahrokh F. Shariat & Melanie R. Hassler. (2020) Discovery of Molecular DNA Methylation-Based Biomarkers through Genome-Wide Analysis of Response Patterns to BCG for Bladder Cancer. Cells 9:8, pages 1839.
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