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Monica L. Fernández-Quintero, Anne Ljungars, Franz Waibl, Victor Greiff, Jan Terje Andersen, Torleif T. Gjølberg, Timothy P. Jenkins, Bjørn Gunnar Voldborg, Lise Marie Grav, Sandeep Kumar, Guy Georges, Hubert Kettenberger, Klaus R. Liedl, Peter M. Tessier, John McCafferty & Andreas H. Laustsen. (2023) Assessing developability early in the discovery process for novel biologics. mAbs 15:1.
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Rahmad Akbar, Habib Bashour, Puneet Rawat, Philippe A. Robert, Eva Smorodina, Tudor-Stefan Cotet, Karine Flem-Karlsen, Robert Frank, Brij Bhushan Mehta, Mai Ha Vu, Talip Zengin, Jose Gutierrez-Marcos, Fridtjof Lund-Johansen, Jan Terje Andersen & Victor Greiff. (2022) Progress and challenges for the machine learning-based design of fit-for-purpose monoclonal antibodies. mAbs 14:1.
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Andreas V. Madsen, Oscar Mejias-Gomez, Lasse E. Pedersen, J. Preben Morth, Peter Kristensen, Timothy P. Jenkins & Steffen Goletz. (2024) Structural trends in antibody-antigen binding interfaces: a computational analysis of 1833 experimentally determined 3D structures. Computational and Structural Biotechnology Journal 23, pages 199-211.
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Tulika Tulika, Rasmus W. Pedersen, Charlotte Rimbault, Shirin Ahmadi, Esperanza Rivera‐de‐Torre, Monica L. Fernández‐Quintero, Johannes R. Loeffler, Markus‐Frederik Bohn, Anne Ljungars, Line Ledsgaard, Bjørn G. Voldborg, Fulgencio Ruso‐Julve, Jan Terje Andersen & Andreas H. Laustsen. (2023)
Phage display assisted discovery of a
pH
‐dependent anti‐α‐cobratoxin antibody from a natural variable domain library
. Protein Science 32:12.
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Monica L. Fernández-Quintero, Nancy D. Pomarici, Anna-Lena M. Fischer, Valentin J. Hoerschinger, Katharina B. Kroell, Jakob R. Riccabona, Anna S. Kamenik, Johannes R. Loeffler, James A. Ferguson, Hailee R. Perrett, Klaus R. Liedl, Julianna Han & Andrew B. Ward. (2023) Structure and Dynamics Guiding Design of Antibody Therapeutics and Vaccines. Antibodies 12:4, pages 67.
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Bora Guloglu & Charlotte M. Deane. (2023) Specific attributes of the VL domain influence both the structure and structural variability of CDR-H3 through steric effects. Frontiers in Immunology 14.
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Nancy D. Pomarici, Franz Waibl, Patrick K. Quoika, Alexander Bujotzek, Guy Georges, Monica L. Fernández-Quintero & Klaus R. Liedl. (2023) Structural mechanism of Fab domain dissociation as a measure of interface stability. Journal of Computer-Aided Molecular Design 37:4, pages 201-215.
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Giuseppe Licari, Kyle P. Martin, Maureen Crames, Joseph Mozdzierz, Michael S. Marlow, Anne R. Karow-Zwick, Sandeep Kumar & Joschka Bauer. (2022) Embedding Dynamics in Intrinsic Physicochemical Profiles of Market-Stage Antibody-Based Biotherapeutics. Molecular Pharmaceutics 20:2, pages 1096-1111.
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Matthew Carter Childers & Valerie Daggett. 2023. Computer-Aided Antibody Design. Computer-Aided Antibody Design
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María Fernanda Aguilar, A. Sergio Garay, Carolina Attallah, Daniel E. Rodrigues & Marcos Oggero. (2022) Changes in antibody binding and functionality after humanizing a murine scFv anti-IFN-α2: From in silico studies to experimental analysis. Molecular Immunology 151, pages 193-203.
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Monica L. Fernández-Quintero, Anna-Lena M. Fischer, Janik Kokot, Franz Waibl, Clarissa A. Seidler & Klaus R. Liedl. (2022) The influence of antibody humanization on shark variable domain (VNAR) binding site ensembles. Frontiers in Immunology 13.
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Franz Waibl, Monica L. Fernández-Quintero, Florian S. Wedl, Hubert Kettenberger, Guy Georges & Klaus R. Liedl. (2022) Comparison of hydrophobicity scales for predicting biophysical properties of antibodies. Frontiers in Molecular Biosciences 9.
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Mabel T. Y. Wong, Sebastian Kelm, Xiaofeng Liu, Richard D. Taylor, Terry Baker & Jonathan W. Essex. (2022) Higher Affinity Antibodies Bind With Lower Hydration and Flexibility in Large Scale Simulations. Frontiers in Immunology 13.
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Monica L. Fernández-Quintero, Anna Vangone, Johannes R. Loeffler, Clarissa A. Seidler, Guy Georges & Klaus R. Liedl. (2022) Paratope states in solution improve structure prediction and docking. Structure 30:3, pages 430-440.e3.
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Thomas Tarenzi, Marta Rigoli & Raffaello Potestio. (2021) Communication pathways bridge local and global conformations in an IgG4 antibody. Scientific Reports 11:1.
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Monica L. Fernández-Quintero, Katharina B. Kroell, Lisa M. Bacher, Johannes R. Loeffler, Patrick K. Quoika, Guy Georges, Alexander Bujotzek, Hubert Kettenberger & Klaus R. Liedl. (2021) Germline-Dependent Antibody Paratope States and Pairing Specific VH-VL Interface Dynamics. Frontiers in Immunology 12.
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Monica L. Fernández-Quintero, Clarissa A. Seidler, Patrick K. Quoika & Klaus R. Liedl. (2021) Shark Antibody Variable Domains Rigidify Upon Affinity Maturation—Understanding the Potential of Shark Immunoglobulins as Therapeutics. Frontiers in Molecular Biosciences 8.
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Sitthinon Siripanthong, Anchalee Techasen, Chanin Nantasenamat, Aijaz Ahmad Malik, Paiboon Sithithaworn, Chanvit Leelayuwat & Amonrat Jumnainsong. (2021) Production and characterization of antibody against Opisthorchis viverrini via phage display and molecular simulation. PLOS ONE 16:3, pages e0248887.
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Monica L. Fernández-Quintero, Katharina B. Kroell, Florian Hofer, Jakob R. Riccabona & Klaus R. Liedl. (2021) Mutation of Framework Residue H71 Results in Different Antibody Paratope States in Solution. Frontiers in Immunology 12.
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Florian Hofer, Anna S. Kamenik, Monica L. Fernández-Quintero, Johannes Kraml & Klaus R. Liedl. (2021) pH-Induced Local Unfolding of the Phl p 6 Pollen Allergen From cpH-MD. Frontiers in Molecular Biosciences 7.
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Franz Waibl, Monica L. Fernández-Quintero, Anna S. Kamenik, Johannes Kraml, Florian Hofer, Hubert Kettenberger, Guy Georges & Klaus R. Liedl. (2021) Conformational Ensembles of Antibodies Determine Their Hydrophobicity. Biophysical Journal 120:1, pages 143-157.
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Monica L. Fernández-Quintero, Katharina B. Kroell, Martin C. Heiss, Johannes R. Loeffler, Patrick K. Quoika, Franz Waibl, Alexander Bujotzek, Ekkehard Moessner, Guy Georges & Klaus R. Liedl. (2020) Surprisingly Fast Interface and Elbow Angle Dynamics of Antigen-Binding Fragments. Frontiers in Molecular Biosciences 7.
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Anna Pomés, Geoffrey A. Mueller & Maksymilian Chruszcz. (2020) Structural Aspects of the Allergen-Antibody Interaction. Frontiers in Immunology 11.
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Monica L. Fernández-Quintero, Johannes R. Loeffler, Lisa M. Bacher, Franz Waibl, Clarissa A. Seidler & Klaus R. Liedl. (2020) Local and Global Rigidification Upon Antibody Affinity Maturation. Frontiers in Molecular Biosciences 7.
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Monica L. Fernández-Quintero, Nancy D. Pomarici, Johannes R. Loeffler, Clarissa A. Seidler & Klaus R. Liedl. (2020) T-Cell Receptor CDR3 Loop Conformations in Solution Shift the Relative Vα-Vβ Domain Distributions. Frontiers in Immunology 11.
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