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Journal of Biopharmaceutical Statistics Volume 13, 2003 - Issue 1
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Original Articles

Normalization Methods for Analysis of Microarray Gene-Expression Data

Yi-Ju Chen Division of Biometry and Risk Assessment, National Center for Toxicological Research, Food and Drug Administration, Jefferson, Arkansas, USA
,
Ralph Kodell Division of Biometry and Risk Assessment, National Center for Toxicological Research, Food and Drug Administration, Jefferson, Arkansas, USA
,
Frank Sistare Division of Applied Pharmacology Research, Center for Drug Evaluation and Research, Food and Drug Administration, Laurel, Maryland, USA
,
Karol L. Thompson Division of Applied Pharmacology Research, Center for Drug Evaluation and Research, Food and Drug Administration, Laurel, Maryland, USA
,
Suzanne Morris Division of Genetic and Reproductive Toxicology, National Center for Toxicological Research, Food and Drug Administration, Jefferson, Arkansas, USA
&
James J. Chen Division of Biometry and Risk Assessment, National Center for Toxicological Research, Food and Drug Administration, Jefferson, Arkansas, USACorrespondence[email protected]
Pages 57-74 | Published online: 16 Aug 2006

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Juan Joanne Zhang, Tsong Yi & Lue Ping Zhao. (2005) Evaluation of Nine Strategies for Analyzing a cDNA Toxicology Microarray Data Set. Journal of Biopharmaceutical Statistics 15:3, pages 403-418.
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Rudolph S. Parrish & Horace J. Spencer$suffix/text()$suffix/text(). (2004) Effect of Normalization on Significance Testing for Oligonucleotide Microarrays. Journal of Biopharmaceutical Statistics 14:3, pages 575-589.
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Chen-An Tsai, Huey-Miin Hsueh & James J. Chen. (2004) A Generalized Additive Model For Microarray Gene Expression Data Analysis. Journal of Biopharmaceutical Statistics 14:3, pages 553-573.
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Sergii Babichev, Orest Khamula, Bohdan Durnyak & Jiří Škvor. 2021. Lecture Notes in Computational Intelligence and Decision Making. Lecture Notes in Computational Intelligence and Decision Making 23 38 .
Sergii Babichev & Jiří Škvor. (2020) Technique of Gene Expression Profiles Extraction Based on the Complex Use of Clustering and Classification Methods. Diagnostics 10:8, pages 584.
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Jyotismita Chaki & Nilanjan Dey. (2019) Pattern analysis of genetics and genomics: a survey of the state-of-art. Multimedia Tools and Applications 79:15-16, pages 11163-11194.
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Masaki Takahashi, Takayuki Negishi, Makoto Imamura, Erika Sawano, Yoichiro Kuroda, Yasuhiro Yoshikawa & Tomoko Tashiro. (2009) Alterations in gene expression of glutamate receptors and exocytosis-related factors by a hydroxylated-polychlorinated biphenyl in the developing rat brain. Toxicology 257:1-2, pages 17-24.
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Haifeng Wei, Yanning Cai, Jin Chu, Chunyang Li & Lin Li. (2007) Temporal Gene Expression Profile in Hippocampus of Mice Treated with d-galactose. Cellular and Molecular Neurobiology 28:5, pages 781-794.
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Zhenlin Ju, Melissa C. Wells & Ronald B. Walter. (2007) DNA microarray technology in toxicogenomics of aquatic models: Methods and applications. Comparative Biochemistry and Physiology Part C: Toxicology & Pharmacology 145:1, pages 5-14.
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Craig C. Whiteford, Sven Bilke, Braden T. Greer, Qingrong Chen, Till A. Braunschweig, Nicola Cenacchi, Jun S. Wei, Malcolm A. Smith, Peter Houghton, Christopher Morton, C. Patrick Reynolds, Richard Lock, Richard Gorlick, Chand Khanna, Carol J. Thiele, Mikiko Takikita, Daniel Catchpoole, Stephen M. Hewitt & Javed Khan. (2007) Credentialing Preclinical Pediatric Xenograft Models Using Gene Expression and Tissue Microarray Analysis. Cancer Research 67:1, pages 32-40.
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Heun-Sik Lee, Mee-Hee Park, Suk-Jin Yang, Kyung Chan Park, Nam-Soon Kim, Yong-Sung Kim, Dae Il Kim, Hyang-Sook Yoo, Eui-Ju Choi & Young Il Yeom. (2007) Novel candidate targets of Wnt/β-catenin signaling in hepatoma cells. Life Sciences 80:7, pages 690-698.
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Carole L Yauk, Andrew Williams, Sherri Boucher, Lynn M Berndt, Gu Zhou, Jenny L Zheng, Andrea Rowan-Carroll, Hongyan Dong, Iain B Lambert, George R Douglas & Craig L Parfett. (2006) Novel design and controls for focused DNA microarrays: applications in quality assurance/control and normalization for the Health Canada ToxArray™. BMC Genomics 7:1.
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Kazunari Tsujimura, Makoto Asamoto, Shugo Suzuki, Naomi Hokaiwado, Kumiko Ogawa & Tomoyuki Shirai. (2006) Prediction of carcinogenic potential by a toxicogenomic approach using rat hepatoma cells. Cancer Science 97:10, pages 1002-1010.
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Jie Chen & Sanat K. Sarkar. (2006) A Bayesian determination of threshold for identifying differentially expressed genes in microarray experiments. Statistics in Medicine 25:18, pages 3174-3189.
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Edwin R. van den Heuvel, Geert Geeven, Susanne Bauerschmidt & Jan E. M. Polman. (2005) Evaluation of an Affymetrix High-density Oligonucleotide Microarray Platform as a Measurement System. Quality and Reliability Engineering International 21:5, pages 491-508.
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. (2005) Print-tip Normalization for DNA Microarray Data. Korean Journal of Applied Statistics 18:1, pages 115-127.
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. (2005) Bayesian Clustering of Prostate Cancer Patients by Using a Latent Class Poisson Model. Korean Journal of Applied Statistics 18:1, pages 1-13.
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Harriet E. Feilotter. (2007) Microarrays in veterinary diagnostics. Animal Health Research Reviews 5:2, pages 249-255.
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Yuanyuan DingDawn Wilkins. (2004) The Effect of Normalization on Microarray Data Analysis. DNA and Cell Biology 23:10, pages 635-642.
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Robert R. Delongchamp, John F. Bowyer, James J. Chen & Ralph L. Kodell. (2004) Multiple-Testing Strategy for Analyzing cDNA Array Data on Gene Expression. Biometrics 60:3, pages 774-782.
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T. R. Zacharewski & J. J. La Pres. 2004. Transcription Factors. Transcription Factors 69 93 .

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