292
Views
28
CrossRef citations to date
0
Altmetric
Original Articles

Normalization Methods for Analysis of Microarray Gene-Expression Data

, , , , &
Pages 57-74 | Published online: 16 Aug 2006

REFERENCES

  • Chen , Y. , Dougherty , E. R. and Bittner , M. L. 1997 . Ratio-based decisions and the quantitative analysis of cDNA microarray images . J. Biomed. Optics , 2 ( 4 ) : 364 – 374 .
  • Draghici , S. , Kuklin , A. , Hoff , B. and Shams , S. 2001 . Experimental design, analysis of variance and slide quality assessment in gene expression array . Drug Discov. Dev. , 4 ( 3 ) : 332 – 337 .
  • Delongchamp , R. R. , Velasco , C. , Evans , R. , Harris , A. and Casciano , D. 2002 . Adjusting cDNA Array for Nuisance Effects Jefferson, AR : National Center for Toxicological Research .
  • Efron , B. , Tibshirani , R. , Goss , V. and Chu , G. 2000 . Microarrays and Their Use in a Comparative Experiment Stanford University .
  • Herzel , H. , Beule , D. , Kielbasa , S. , Korbel , J. , Sers , C. , Malik , A. , Eickhoff , H. , Lehrach , H. and Schuchhardt , J. 2001 . Extracting information from cDNA arrays . Chaos , 11 ( 1 ) : 98 – 107 .
  • Kerr , M. K. and Churchill , G. A. 2001 . Experimental design for gene expression microarrays . Bio-Stat. , 2 : 183 – 201 .
  • Kerr , M. K. , Martin , M. and Churchill , G. A. 2000 . Analysis of variance for gene expression microarray data . J. Comput. Biol. , 7 ( 6 ) : 819 – 838 .
  • Kerr , M. K. , Afshari , C. A. , Bennett , L. , Bushel , P. , Martinez , J. , Walker , N. J. and Churchill , G. A. 2001 . Statistical analysis of a gene expression microarray experiment with replication . Stat. Sinica , 7 ( 6 ) : 819 – 838 .
  • in press .
  • Schuchhardt , S. , Beule , D. , Malik , A. , Wolski , E. , Eickhoff , H. , Lehrach , H. and Herzel , H. 2000 . Normalization strategies for cDNA microarrays . Nucleic Acids Res. , 28 ( 10 ) : e47
  • Spellman , P. T. , Sherlock , G. , Zhang , M. Q. , Iyer , V. R. , Anders , K. , Eisen , M. B. , Brown , P. O. , Botstein , D. and Futcher , B. 1998 . Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiaeby microarray hybridization . Mol. Biol. Cell , 9 ( 12 ) : 3273 – 3297 .
  • Thompson , K. L. , Mirsky , M. L. , Kadyszewski , E. and Sistare , F. D. 2002 . Concordance of degree of renal injury with gene expression in individual animals treated with the nephro-toxicant cisplatin . The Toxicol. , 66 ( 1 ) : 297
  • Wolfinger , R. D. , Gibson , G. and Wolfinger , E. D. 2001 . Assessing gene significance from cDNA microarray expression data via mixed models . J. Comput. Biol ,
  • Yang , Y. W. , Dudoit , S. , Luu , P. and Speed , T. P. 2001 . “ Normalization of cDNA microarray data ” . In Microarrays: Optical Technologies and Informatics Edited by: Bittner , M. L. , Chen , Y. , Dorsel , A. N. and Dougherty , E. R. 141 – 152 .

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.