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Soil Science and Plant Nutrition Volume 53, 2007 - Issue 4
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ORIGINAL ARTICLE

Seasonal variations in the abundance of virus-like particles and bacteria in the floodwater of a Japanese paddy field

Natsuko Nakayama Laboratory of Soil Biology and Chemistry, Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, 464-8601Correspondence[email protected]
,
Mami Okumura Laboratory of Soil Biology and Chemistry, Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, 464-8601
,
Katsuhiro Inoue Laboratory of Crop Sciences, Aichi-ken Anjo Research and Extension Center, Anjo, 446-0073, Japan
,
Susumu Asakawa Laboratory of Soil Biology and Chemistry, Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, 464-8601
&
Makoto Kimura Laboratory of Soil Biology and Chemistry, Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, 464-8601
Pages 420-429 | Received 17 Nov 2006, Accepted 11 Mar 2007, Published online: 17 Dec 2010

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Vita Ratri Cahyani, Jun Murase, Eiji Ishibashi, Susumu Asakawa & Makoto Kimura. (2009) T4-type bacteriophage communities estimated from the major capsid genes (g23) in manganese nodules in Japanese paddy fields. Soil Science and Plant Nutrition 55:2, pages 264-270.
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Natsuko Nakayama, Takashi Tsuge, Susumu Asakawa & Makoto Kimura. (2009) Morphology, host range and phylogenetic diversity of Sphingomonas phages in the floodwater of a Japanese paddy field. Soil Science and Plant Nutrition 55:1, pages 53-64.
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Makoto Kimura, Zhong-Jun Jia, Natsuko Nakayama & Susumu Asakawa. (2008) Ecology of viruses in soils: Past, present and future perspectives. Soil Science and Plant Nutrition 54:1, pages 1-32.
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Natsuko Nakayama, Mami Okumura, Katsuhiro Inoue, Susumu Asakawa & Makoto Kimura. (2007) Abundance of bacteriophages of common heterotrophic bacteria in the floodwater of a Japanese paddy field. Soil Science and Plant Nutrition 53:5, pages 595-605.
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Articles from other publishers (20)

Cong Liu, Bingchuan Ni, Xinlei Wang, Yijun Deng, Linfang Tao, Xuhui Zhou & Jie Deng. (2023) Effect of forest soil viruses on bacterial community succession and the implication for soil carbon sequestration. Science of The Total Environment 892, pages 164800.
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Daniel J Wieczynski, Kristin M Yoshimura, Elizabeth R Denison, Stefan Geisen, Jennifer M DeBruyn, A Jonathan Shaw, David J Weston, Dale A Pelletier, Steven W Wilhelm & Jean P Gibert. (2023) Viral infections likely mediate microbial controls on ecosystem responses to global warming. FEMS Microbiology Ecology 99:3.
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Yong Li, Haiyang Liu, Hong Pan, Xinyu Zhu, Chen Liu, Qichun Zhang, Yu Luo, Hongjie Di & Jianming Xu. (2019) T4-type viruses: Important impacts on shaping bacterial community along a chronosequence of 2000-year old paddy soils. Soil Biology and Biochemistry 128, pages 89-99.
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Kaarle J. Parikka, Marc Le Romancer, Nina Wauters & Stéphan Jacquet. (2017) Deciphering the virus-to-prokaryote ratio (VPR): insights into virus-host relationships in a variety of ecosystems. Biological Reviews 92:2, pages 1081-1100.
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Xinzhen Wang, Junjie Liu, Zhenhua Yu, Jian Jin, Xiaobing Liu & Guanghua Wang. (2016) Novel groups and unique distribution of phage phoH genes in paddy waters in northeast China. Scientific Reports 6:1.
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Natsuko Nakayama & Masami Hamaguchi. (2016) Multiplex reverse transcription quantitative PCR detection of a single-stranded RNA virus HcRNAV infecting the bloom-forming dinoflagellate Heterocapsa circularisquama . Limnology and Oceanography: Methods 14:6, pages 370-380.
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Xinzhen Wang, Ruiyong Jing, Junjie Liu, Zhenhua Yu, Jian Jin, Xiaobing Liu, Xiaojuan Wang & Guanghua Wang. (2016) Narrow distribution of cyanophage psbA genes observed in two paddy waters of Northeast China by an incubation experiment. Virologica Sinica 31:2, pages 188-191.
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Luisa Barreiros, Joana Peres, Nuno F. Azevedo, Célia M. Manaia & Olga C. Nunes. (2012) Environmental factors influencing molinate biodegradation by a two-member mixed culture in rice paddy field floodwater. International Biodeterioration & Biodegradation 72, pages 52-58.
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Guanghua Wang, Zhenhua Yu, Junjie Liu, Jian Jin, Xiaobing Liu & Makoto Kimura. (2011) Molecular analysis of the major capsid genes (g23) of T4-type bacteriophages in an upland black soil in Northeast China. Biology and Fertility of Soils 47:3, pages 273-282.
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Makoto Kimura, Guanghua Wang, Natsuko Nakayama & Susumu Asakawa. 2011. Biocommunication in Soil Microorganisms. Biocommunication in Soil Microorganisms 189 213 .
Bethany Allen, Dana Willner, Walter C. Oechel & David Lipson. (2010) Top-down control of microbial activity and biomass in an Arctic soil ecosystem. Environmental Microbiology 12:3, pages 642-648.
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M. Buée, W. De Boer, F. Martin, L. van Overbeek & E. Jurkevitch. (2009) The rhizosphere zoo: An overview of plant-associated communities of microorganisms, including phages, bacteria, archaea, and fungi, and of some of their structuring factors. Plant and Soil 321:1-2, pages 189-212.
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Guanghua Wang, Jun Murase, Katsutoshi Taki, Yoshinori Ohashi, Nanako Yoshikawa, Susumu Asakawa & Makoto Kimura. (2009) Changes in major capsid genes (g23) of T4-type bacteriophages with soil depth in two Japanese rice fields. Biology and Fertility of Soils 45:5, pages 521-529.
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Natsuko Nakayama, Susumu Asakawa & Makoto Kimura. (2009) Frequency of phage-infected bacterial cells in the floodwater of a Japanese paddy field. Soil Biology and Biochemistry 41:2, pages 186-191.
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Natsuko Nakayama, Susumu Asakawa & Makoto Kimura. (2009) Comparison of g23 gene sequence diversity between Novosphingobium and Sphingomonas phages and phage communities in the floodwater of a Japanese paddy field. Soil Biology and Biochemistry 41:2, pages 179-185.
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Guanghua Wang, Motoki Hayashi, Masato Saito, Kazunari Tsuchiya, Susumu Asakawa & Makoto Kimura. (2009) Survey of major capsid genes (g23) of T4-type bacteriophages in Japanese paddy field soils. Soil Biology and Biochemistry 41:1, pages 13-20.
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EVELYN F. JACKSON & COLIN R. JACKSON. (2008) Viruses in wetland ecosystems. Freshwater Biology 53:6, pages 1214-1227.
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Sharath Srinivasiah, Jaysheel Bhavsar, Kanika Thapar, Mark Liles, Tom Schoenfeld & K. Eric Wommack. (2008) Phages across the biosphere: contrasts of viruses in soil and aquatic environments. Research in Microbiology 159:5, pages 349-357.
Crossref
Takeshi Fujii, Natsuko Nakayama, Mizuhiko Nishida, Hiroyuki Sekiya, Naoto Kato, Susumu Asakawa & Makoto Kimura. (2008) Novel capsid genes (g23) of T4-type bacteriophages in a Japanese paddy field. Soil Biology and Biochemistry 40:5, pages 1049-1058.
Crossref
Natsuko Nakayama, Mami Okumura, Katsuhiro Inoue, Susumu Asakawa & Makoto Kimura. (2007) Morphological analysis of viral communities in the floodwater of a Japanese paddy field. Soil Biology and Biochemistry 39:12, pages 3187-3190.
Crossref

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