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Molecular and Cellular Biology Volume 28, 2008 - Issue 9
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Article

Splicing Factors SF1 and U2AF Associate in Extraspliceosomal Complexes

José Rino1 Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, 1649-028Lisbon, Portugal
,
Joana M. P. Desterro1 Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, 1649-028Lisbon, Portugal
,
Teresa R. Pacheco1 Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, 1649-028Lisbon, Portugal
,
Theodorus W. J. Gadella Jr.2 Molecular Cytology Section, Swammerdam Institute for Life Sciences, University of Amsterdam, Kruislaan 316, 1098SM Amsterdam, The Netherlands
&
Maria Carmo-Fonseca1 Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, 1649-028Lisbon, PortugalCorrespondence[email protected]
Pages 3045-3057 | Received 08 Nov 2007, Accepted 12 Feb 2008, Published online: 27 Mar 2023

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Yishu Wang, Yu Yu, Yidan Pang, Haojun Yu, Wenqi Zhang, Xian Zhao & Jianxiu Yu. (2021) The distinct roles of zinc finger CCHC-type (ZCCHC) superfamily proteins in the regulation of RNA metabolism. RNA Biology 18:12, pages 2107-2126.
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Jialiang Li, Guangyue Li, Yige Qi, Yao Lu, Hao Wang, Ke Shi, Dangdang Li, Jinming Shi, Daniel B. Stovall & Guangchao Sui. (2021) SRSF5 regulates alternative splicing of DMTF1 pre-mRNA through modulating SF1 binding. RNA Biology 18:sup1, pages 318-336.
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Sachin Kumar Gupta, Vaibhav Chikne, Dror Eliaz, Itai Dov Tkacz, Ilana Naboishchikov, Shai Carmi, Hiba Waldman Ben-Asher & Shulamit Michaeli. (2014) Two splicing factors carrying serine-arginine motifs, TSR1 and TSR1IP, regulate splicing, mRNA stability, and rRNA processing in Trypanosoma brucei. RNA Biology 11:6, pages 715-731.
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Pratyush Mishra, S. H. Harsha Sankar, Nishad Gosavi & Ruthrotha Selvi Bharathavikru. (2022) RNA nucleoprotein complexes in biological systems. Proceedings of the Indian National Science Academy 88:3, pages 300-323.
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Eun-Jin Wang, Young-Cheon Kim, Jeong Hwan Lee & Jeong-Kook Kim. (2021) Identification of a nuclear localization signal mediating the nuclear import of Arabidopsis splicing factor1. Plant Biotechnology Reports 15:6, pages 775-781.
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Dustin Haskell & Anna Zinovyeva. (2021) KH domain containing RNA-binding proteins coordinate with microRNAs to regulate Caenorhabditis elegans development . G3 Genes|Genomes|Genetics 11:2.
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Zhuangbiao Zhang, Xiaoyun He, Qiuyue Liu, Jishun Tang, Ran Di & Mingxing Chu. (2020) TGIF1 and SF1 polymorphisms are associated with litter size in Small Tail Han sheep . Reproduction in Domestic Animals 55:9, pages 1145-1153.
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Jesica G. Mild, Lucia R. Fernandez, Odile Gayet, Juan Iovanna, Nelson Dusetti & Martin M. Edreira. (2018) Optimization of a Bioluminescence Resonance Energy Transfer-Based Assay for Screening of Trypanosoma cruzi Protein/Protein Interaction Inhibitors. Molecular Biotechnology 60:5, pages 369-379.
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Hyo-Young Park, Keh Chien Lee, Yun Hee Jang, Soon-Kap Kim, May Phyo Thu, Jeong Hwan Lee & Jeong-Kook Kim. (2017) The Arabidopsis splicing factors, AtU2AF65, AtU2AF35, and AtSF1 shuttle between nuclei and cytoplasms. Plant Cell Reports 36:7, pages 1113-1123.
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Rakesh Chatrikhi, Wenhua Wang, Ankit Gupta, Sarah Loerch, Alexandre Maucuer & Clara L. Kielkopf. (2016) SF1 Phosphorylation Enhances Specific Binding to U2AF 65 and Reduces Binding to 3′-Splice-Site RNA. Biophysical Journal 111:12, pages 2570-2586.
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Noemí Sánchez-Hernández, Stéphanie Boireau, Ute Schmidt, Juan Pablo Muñoz-Cobo, Cristina Hernández-Munain, Edouard Bertrand & Carlos Suñé. (2016) The in vivo dynamics of TCERG1, a factor that couples transcriptional elongation with splicing. RNA 22:4, pages 571-582.
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Soraya Becerra, Eduardo Andrés‐León, Silvia Prieto‐Sánchez, Cristina Hernández‐Munain & Carlos Suñé. (2015) Prp40 and early events in splice site definition. WIREs RNA 7:1, pages 17-32.
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Hui-Ling Huang, Yu-Chung Wu, Li-Jen Su, Yun-Ju Huang, Phasit Charoenkwan, Wen-Liang Chen, Hua-Chin Lee, William Cheng-Chung Chu & Shinn-Ying Ho. (2015) Discovery of prognostic biomarkers for predicting lung cancer metastasis using microarray and survival data. BMC Bioinformatics 16:1.
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Rosanna Beraldi, Xing Li, Almudena Martinez Fernandez, Santiago Reyes, Frank Secreto, Andre Terzic, Timothy M. Olson & Timothy J. Nelson. (2014) Rbm20-deficient cardiogenesis reveals early disruption of RNA processing and sarcomere remodeling establishing a developmental etiology for dilated cardiomyopathy. Human Molecular Genetics 23:14, pages 3779-3791.
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José Rino, Robert M. Martin, Teresa Carvalho & Maria Carmo-Fonseca. (2014) Imaging dynamic interactions between spliceosomal proteins and pre-mRNA in living cells. Methods 65:3, pages 359-366.
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Irina Bogolyubova, Grigory Stein & Dmitry Bogolyubov. (2012) FRET analysis of interactions between actin and exon-exon-junction complex proteins in early mouse embryos. Cell and Tissue Research 352:2, pages 277-285.
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Sachin Kumar Gupta, Shai Carmi, Hiba Waldman Ben-Asher, Itai Dov Tkacz, Ilana Naboishchikov & Shulamit Michaeli. (2013) Basal Splicing Factors Regulate the Stability of Mature mRNAs in Trypanosomes. Journal of Biological Chemistry 288:7, pages 4991-5006.
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Eva Šimková & David Staněk. (2012) Probing Nucleic Acid Interactions and Pre-mRNA Splicing by Förster Resonance Energy Transfer (FRET) Microscopy. International Journal of Molecular Sciences 13:12, pages 14929-14945.
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Miguel Sánchez-Álvarez, Noemí Sánchez-Hernández & Carlos Suñé. (2011) Spatial Organization and Dynamics of Transcription Elongation and Pre-mRNA Processing in Live Cells. Genetics Research International 2011, pages 1-10.
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Xiaohong Zhang, Caitlin A. Tolzmann, Martin Melcher, Brian J. Haas, Malcolm J. Gardner, Joseph D. Smith & Jean E. Feagin. (2011) Branch Point Identification and Sequence Requirements for Intron Splicing in Plasmodium falciparum. Eukaryotic Cell 10:11, pages 1422-1428.
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Margherita Corioni, Nicolas Antih, Goranka Tanackovic, Mihaela Zavolan & Angela Krämer. (2011) Analysis of in situ pre-mRNA targets of human splicing factor SF1 reveals a function in alternative splicing. Nucleic Acids Research 39:5, pages 1868-1879.
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Martina Huranová, Ivan Ivani, Aleš Benda, Ina Poser, Yehuda Brody, Martin Hof, Yaron Shav-Tal, Karla M. Neugebauer & David Staněk. (2010) The differential interaction of snRNPs with pre-mRNA reveals splicing kinetics in living cells. Journal of Cell Biology 191:1, pages 75-86.
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Jana Kralovicova & Igor Vorechovsky. (2010) Allele-specific recognition of the 3′ splice site of INS intron 1. Human Genetics 128:4, pages 383-400.
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Brian C. Rymond. 2010. Post-Transcriptional Regulation by STAR Proteins. Post-Transcriptional Regulation by STAR Proteins 123 141 .
Martina Huranová, Joseph A. Jablonski, Aleš Benda, Martin Hof, David Staněk & Massimo Caputi. (2009) In vivo detection of RNA-binding protein interactions with cognate RNA sequences by fluorescence resonance energy transfer. RNA 15:11, pages 2063-2071.
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José Rino & Maria Carmo-Fonseca. (2009) The spliceosome: a self-organized macromolecular machine in the nucleus?. Trends in Cell Biology 19:8, pages 375-384.
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Britta Hartmann & Juan Valcárcel. (2009) Decrypting the genome's alternative messages. Current Opinion in Cell Biology 21:3, pages 377-386.
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Jennifer C. LongJavier F. Caceres. (2008) The SR protein family of splicing factors: master regulators of gene expression. Biochemical Journal 417:1, pages 15-27.
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Malte Wachsmuth, Maïwen Caudron-Herger & Karsten Rippe. (2008) Genome organization: Balancing stability and plasticity. Biochimica et Biophysica Acta (BBA) - Molecular Cell Research 1783:11, pages 2061-2079.
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Jonathan D. Ellis, David Llères, Marco Denegri, Angus I. Lamond & Javier F. Cáceres. (2008) Spatial mapping of splicing factor complexes involved in exon and intron definition. Journal of Cell Biology 181:6, pages 921-934.
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