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Molecular and Cellular Biology Volume 31, 2011 - Issue 18
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Article

The Midblastula Transition Defines the Onset of Y RNA-Dependent DNA Replication in Xenopus laevis

Clara Collart1 Department of Zoology, University of Cambridge, Downing Street, CambridgeCB2 3EJ, United Kingdom;2 Wellcome Trust/Cancer Research UK Gurdon Institute, University of Cambridge, Tennis Court Road, CambridgeCB2 1QN, United Kingdom;3 MRC National Institute for Medical Research, The Ridgeway, Mill Hill, LondonNW7 1AA, United Kingdom
,
Christo P. Christov1 Department of Zoology, University of Cambridge, Downing Street, CambridgeCB2 3EJ, United Kingdom
,
James C. Smith1 Department of Zoology, University of Cambridge, Downing Street, CambridgeCB2 3EJ, United Kingdom;2 Wellcome Trust/Cancer Research UK Gurdon Institute, University of Cambridge, Tennis Court Road, CambridgeCB2 1QN, United Kingdom;3 MRC National Institute for Medical Research, The Ridgeway, Mill Hill, LondonNW7 1AA, United Kingdom
&
Torsten Krude1 Department of Zoology, University of Cambridge, Downing Street, CambridgeCB2 3EJ, United KingdomCorrespondence[email protected]
Pages 3857-3870 | Received 28 Mar 2011, Accepted 10 Jul 2011, Published online: 20 Mar 2023

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Marie Platel, Hemalatha Narassimprakash, Diletta Ciardo, Olivier Haccard & Kathrin Marheineke. (2019) Genome wide decrease of DNA replication eye density at the midblastula transition of Xenopus laevis. Cell Cycle 18:13, pages 1458-1472.
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Francisco Ferreira Duarte Junior, Paulo Sérgio Alves Bueno, Sofia L. Pedersen, Fabiana dos Santos Rando, José Renato Pattaro Júnior, Daniel Caligari, Anelise Cardoso Ramos, Lorena Gomes Polizelli, Ailson Francisco dos Santos Lima, Quirino Alves de Lima Neto, Torsten Krude, Flavio Augusto Vicente Seixas & Maria Aparecida Fernandez. (2019) Identification and characterization of stem-bulge RNAs in Drosophila melanogaster. RNA Biology 16:3, pages 330-339.
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Marco Boccitto & Sandra L. Wolin. (2019) Ro60 and Y RNAs: structure, functions, and roles in autoimmunity. Critical Reviews in Biochemistry and Molecular Biology 54:2, pages 133-152.
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Varvara V. Popova, Alexander V. Brechalov, Sofia G. Georgieva & Daria V. Kopytova. (2018) Nonreplicative functions of the origin recognition complex. Nucleus 9:1, pages 460-473.
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Sandra L Wolin, Cedric Belair, Marco Boccitto, Xinguo Chen, Soyeong Sim, David W Taylor & Hong-Wei Wang. (2013) Non-coding Y RNAs as tethers and gates. RNA Biology 10:10, pages 1602-1608.
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Articles from other publishers (29)

Gyan Ranjan, Paras Sehgal, Disha Sharma, Vinod Scaria & Sridhar Sivasubbu. (2021) Functional long non-coding and circular RNAs in zebrafish. Briefings in Functional Genomics.
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Yuanyuan Leng, Soyeong Sim, Valentin Magidson & Sandra L Wolin. (2020) Noncoding Y RNAs regulate the levels, subcellular distribution and protein interactions of their Ro60 autoantigen partner. Nucleic Acids Research 48:12, pages 6919-6930.
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Caterina Gulìa, Fabrizio Signore, Marco Gaffi, Silvia Gigli, Raffaella Votino, Roberto Nucciotti, Luca Bertacca, Simona Zaami, Alberto Baffa, Edoardo Santini, Alessandro Porrello & Roberto Piergentili. (2020) Y RNA: An Overview of Their Role as Potential Biomarkers and Molecular Targets in Human Cancers. Cancers 12:5, pages 1238.
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Qi Chen, Xianwen Meng, Qi Liao & Ming Chen. (2019) Versatile interactions and bioinformatics analysis of noncoding RNAs. Briefings in Bioinformatics 20:5, pages 1781-1794.
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Chames Kermi, Antoine Aze & Domenico Maiorano. (2019) Preserving Genome Integrity during the Early Embryonic DNA Replication Cycles. Genes 10:5, pages 398.
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Diletta Ciardo, Arach Goldar & Kathrin Marheineke. (2019) On the Interplay of the DNA Replication Program and the Intra-S Phase Checkpoint Pathway. Genes 10:2, pages 94.
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Kriti Kaushik, Ambily Sivadas, Shamsudheen Karuthedath Vellarikkal, Ankit Verma, Rijith Jayarajan, Satyaprakash Pandey, Tavprithesh Sethi, Souvik Maiti, Vinod Scaria & Sridhar Sivasubbu. (2018) RNA secondary structure profiling in zebrafish reveals unique regulatory features. BMC Genomics 19:1.
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Soyeong Sim & Sandra L. Wolin. 2018. Regulating with RNA in Bacteria and Archaea. Regulating with RNA in Bacteria and Archaea 369 381 .
Amro ElgheznawyIngrid Fleming. (2018) Platelet-Enriched MicroRNAs and Cardiovascular Homeostasis. Antioxidants & Redox Signaling 29:9, pages 902-921.
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Soyeong Sim & Sandra L. Wolin. (2018) Bacterial Y RNAs: Gates, Tethers, and tRNA Mimics. Microbiology Spectrum 6:4.
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George E. Gentsch, Thomas Spruce, Rita S. Monteiro, Nick D.L. Owens, Stephen R. Martin & James C. Smith. (2018) Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus. Developmental Cell 44:5, pages 597-610.e10.
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Christo P. Christov, Kevin S. Dingwell, Mark Skehel, Helen S. Wilkes, Julian E. Sale, James C. Smith & Torsten Krude. (2018) A NuRD Complex from Xenopus laevis Eggs Is Essential for DNA Replication during Early Embryogenesis. Cell Reports 22:9, pages 2265-2278.
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Eyemen G. A. Kheir & Torsten Krude. (2017) Non-coding Y RNAs associate with early replicating euchromatin concordantly with the origin recognition complex (ORC). Journal of Cell Science.
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Madzia P. Crossley & Torsten Krude. 2017. Morpholino Oligomers. Morpholino Oligomers 151 160 .
Quirino Alves de Lima Neto, Francisco Ferreira Duarte Junior, Paulo Sérgio Alves Bueno, Flavio Augusto Vicente Seixas, Madzia Pauline Kowalski, Eyemen Kheir, Torsten Krude & Maria Aparecida Fernandez. (2016) Structural and functional analysis of four non-coding Y RNAs from Chinese hamster cells: identification, molecular dynamics simulations and DNA replication initiation assays. BMC Molecular Biology 17:1.
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Daria Kopytova, Varvara Popova, Maria Kurshakova, Yulii Shidlovskii, Elena Nabirochkina, Alexander Brechalov, Georgii Georgiev & Sofia Georgieva. (2016) ORC interacts with THSC/TREX-2 and its subunits promote Nxf1 association with mRNP and mRNA export in Drosophila . Nucleic Acids Research 44:10, pages 4920-4933.
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Madzia P. Kowalski & Torsten Krude. (2015) Functional roles of non-coding Y RNAs. The International Journal of Biochemistry & Cell Biology 66, pages 20-29.
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Madzia P. Kowalski, Howard A. Baylis & Torsten Krude. (2015) Non-coding stem-bulge RNAs are required for cell proliferation and embryonic development in C. elegans . Journal of Cell Science 128:11, pages 2118-2129.
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Michalis Fragkos, Olivier Ganier, Philippe Coulombe & Marcel Méchali. (2015) DNA replication origin activation in space and time. Nature Reviews Molecular Cell Biology 16:6, pages 360-374.
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Shadabul HaqueKriti KaushikVincent Elvin LeonardShruti KapoorAmbily SivadasAdita JoshiVinod ScariaSridhar Sivasubbu. (2014) Short Stories on Zebrafish Long Noncoding RNAs. Zebrafish 11:6, pages 499-508.
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Alexander R. Langley, James C. Smith, Derek L. Stemple & Steven A. Harvey. (2014) New insights into the maternal to zygotic transition. Development 141:20, pages 3834-3841.
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Iren Wang, Madzia P. Kowalski, Alexander R. Langley, Raphaël Rodriguez, Shankar Balasubramanian, Shang-Te Danny Hsu & Torsten Krude. (2014) Nucleotide Contributions to the Structural Integrity and DNA Replication Initiation Activity of Noncoding Y RNA. Biochemistry 53:37, pages 5848-5863.
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Joseph M. Dhahbi. (2014) Circulating small noncoding RNAs as biomarkers of aging. Ageing Research Reviews 17, pages 86-98.
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Marta Rodríguez‐Martínez & Marcel Méchali. 2001. eLS. eLS.
Xin Quan Ge & Haifan Lin. (2014) Noncoding RNAs in the regulation of DNA replication. Trends in Biochemical Sciences 39:8, pages 341-343.
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Claire Renard-Guillet, Yutaka Kanoh, Katsuhiko Shirahige & Hisao Masai. (2014) Temporal and spatial regulation of eukaryotic DNA replication: From regulated initiation to genome-scale timing program. Seminars in Cell & Developmental Biology 30, pages 110-120.
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Marcel Köhn, Nikolaos Pazaitis & Stefan Hüttelmaier. (2013) Why YRNAs? About Versatile RNAs and Their Functions. Biomolecules 3:4, pages 143-156.
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Gaetano Ivan Dellino, Davide Cittaro, Rossana Piccioni, Lucilla Luzi, Stefania Banfi, Simona Segalla, Matteo Cesaroni, Ramiro Mendoza-Maldonado, Mauro Giacca & Pier Giuseppe Pelicci. (2013) Genome-wide mapping of human DNA-replication origins: Levels of transcription at ORC1 sites regulate origin selection and replication timing. Genome Research 23:1, pages 1-11.
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Zhen Shen & Supriya G Prasanth. (2012) Emerging players in the initiation of eukaryotic DNA replication. Cell Division 7:1, pages 22.
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