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Molecular and Cellular Biology Volume 15, 1995 - Issue 6
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Research Article

Site-Specific Initiation of DNA Replication in Xenopus Egg Extract Requires Nuclear Structure

David M. GilbertRoche Institute of Molecular Biology, Roche Research Center, Nutley, New Jersey07110-1199
,
Hiroshi MiyazawaRoche Institute of Molecular Biology, Roche Research Center, Nutley, New Jersey07110-1199
&
Melvin L. DePamphilisRoche Institute of Molecular Biology, Roche Research Center, Nutley, New Jersey07110-1199Correspondence[email protected]
Pages 2942-2954 | Received 16 Dec 1994, Accepted 03 Mar 1995, Published online: 30 Mar 2023

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Clare S.K. Lee, Matthias Weiβ & Stephan Hamperl. (2023) Where and when to start: Regulating DNA replication origin activity in eukaryotic genomes. Nucleus 14:1.
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Clara Collart, Christo P. Christov, James C. Smith & Torsten Krude. (2011) The Midblastula Transition Defines the Onset of Y RNA-Dependent DNA Replication in Xenopus laevis. Molecular and Cellular Biology 31:18, pages 3857-3870.
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Peter J. Gillespie & Julian Blow. (2010) Clusters, factories and domains. Cell Cycle 9:16, pages 3238-3246.
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Jeffrey A. Shaman, Yasuhiro Yamauchi & W. Steven Ward. (2007) Function of the Sperm Nuclear Matrix. Archives of Andrology 53:3, pages 135-140.
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Takayo Sasaki, Sunita Ramanathan, Yukiko Okuno, Chiharu Kumagai, Seemab S. Shaikh & David M. Gilbert. (2006) The Chinese Hamster Dihydrofolate Reductase Replication Origin Decision Point Follows Activation of Transcription and Suppresses Initiation of Replication within Transcription Units. Molecular and Cellular Biology 26:3, pages 1051-1062.
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Cong-jun Li, Alex Vassilev & Melvin L. DePamphilis. (2004) Role for Cdk1 (Cdc2)/Cyclin A in Preventing the Mammalian Origin Recognition Complex's Largest Subunit (Orc1) from Binding to Chromatin during Mitosis. Molecular and Cellular Biology 24:13, pages 5875-5886.
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Pieter A. Dijkwel, Shuntai Wang & Joyce L. Hamlin. (2002) Initiation Sites Are Distributed at Frequent Intervals in the Chinese Hamster Dihydrofolate Reductase Origin of Replication but Are Used with Very Different Efficiencies. Molecular and Cellular Biology 22:9, pages 3053-3065.
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Cong-Jun Li & Melvin L. DePamphilis. (2002) Mammalian Orc1 Protein Is Selectively Released from Chromatin and Ubiquitinated during the S-to-M Transition in the Cell Division Cycle. Molecular and Cellular Biology 22:1, pages 105-116.
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Elizabeth R. Leight & Bill Sugden. (2001) Establishment of an oriP Replicon Is Dependent upon an Infrequent, Epigenetic Event. Molecular and Cellular Biology 21:13, pages 4149-4161.
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Lubomir B. Smilenov, Sonu Dhar & Tej K. Pandita. (1999) Altered Telomere Nuclear Matrix Interactions and Nucleosomal Periodicity in Ataxia Telangiectasia Cells before and after Ionizing Radiation Treatment. Molecular and Cellular Biology 19:10, pages 6963-6971.
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Michelle Malott & Michael Leffak. (1999) Activity of the c-myc Replicator at an Ectopic Chromosomal Location. Molecular and Cellular Biology 19:8, pages 5685-5695.
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Takehiko Kobayashi, Theo Rein & Melvin L. DePamphilis. (1998) Identification of Primary Initiation Sites for DNA Replication in the Hamster Dihydrofolate Reductase Gene Initiation Zone. Molecular and Cellular Biology 18:6, pages 3266-3277.
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Shuntai Wang, Pieter A. Dijkwel & Joyce L. Hamlin. (1998) Lagging-Strand, Early-Labelling, and Two-Dimensional Gel Assays Suggest Multiple Potential Initiation Sites in the Chinese Hamster Dihydrofolate Reductase Origin. Molecular and Cellular Biology 18:1, pages 39-50.
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Jia-Rui Wu & David M. Gilbert. (1997) The Replication Origin Decision Point Is a Mitogen-Independent, 2-Aminopurine-Sensitive, G1-Phase Event That Precedes Restriction Point Control. Molecular and Cellular Biology 17:8, pages 4312-4321.
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Laurence Vernis, Abdelhamid Abbas, Marion Chasles, Claude M. Gaillardin, Christine Brun, Joel A. Huberman & Philippe Fournier. (1997) An Origin of Replication and a Centromere Are Both Needed To Establish a Replicative Plasmid in the Yeast Yarrowia lipolytica. Molecular and Cellular Biology 17:4, pages 1995-2004.
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Theo Rein, Haralabos Zorbas & Melvin L. DePamphilis. (1997) Active Mammalian Replication Origins Are Associated with a High-Density Cluster of mCpG Dinucleotides. Molecular and Cellular Biology 17:1, pages 416-426.
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Reiko Ohba, Ken Matsumoto & Yukio Ishimi. (1996) Induction of DNA Replication by Transcription in the Region Upstream of the Human c-myc Gene in a Model Replication System. Molecular and Cellular Biology 16:10, pages 5754-5763.
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Robert F. Kalejta, Hong-Bo Lin, Pieter A. Dijkwel & Joyce L. Hamlin. (1996) Characterizing Replication Intermediates in the Amplified CHO Dihydrofolate Reductase Domain by Two Novel Gel Electrophoretic Techniques. Molecular and Cellular Biology 16:9, pages 4923-4931.
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Articles from other publishers (74)

Molly R. Gordon, Daniel A. Bartlett & David M. Gilbert. 2018. Nuclear Architecture and Dynamics. Nuclear Architecture and Dynamics 407 434 .
Juan Carlos Rivera-Mulia & David M. Gilbert. (2016) Replicating Large Genomes: Divide and Conquer. Molecular Cell 62:5, pages 756-765.
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M.L. DePamphilis. 2016. Mammalian Preimplantation Development. Mammalian Preimplantation Development 55 102 .
Melvin L. DePamphilis. 2016. Essays on Developmental Biology, Part A. Essays on Developmental Biology, Part A 201 229 .
Joseph C. Siefert, Emily A. Clowdus & Christopher L. Sansam. (2015) Cell cycle control in the early embryonic development of aquatic animal species. Comparative Biochemistry and Physiology Part C: Toxicology & Pharmacology 178, pages 8-15.
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Olivier Hyrien. (2015) Peaks cloaked in the mist: The landscape of mammalian replication origins. Journal of Cell Biology 208:2, pages 147-160.
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Wasia Rizwani & Srikumar P. Chellappan. 2015. Chromatin Protocols. Chromatin Protocols 349 362 .
Ekaterina Belan. (2013) LINEs of evidence: noncanonical DNA replication as an epigenetic determinant. Biology Direct 8:1.
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Yoav Lubelsky, Takayo Sasaki, Marjorie A. Kuipers, Isabelle Lucas, Michelle M. Le Beau, Sandra Carignon, Michelle Debatisse, Joseph A. Prinz, Jonathan H. Dennis & David M. Gilbert. (2011) Pre-replication complex proteins assemble at regions of low nucleosome occupancy within the Chinese hamster dihydrofolate reductase initiation zone. Nucleic Acids Research 39:8, pages 3141-3155.
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Melvin L DePamphilis & Mirit I Aladjem. 2001. eLS. eLS.
Alexander M. Thomson, Peter J. Gillespie & J. Julian Blow. (2010) Replication factory activation can be decoupled from the replication timing program by modulating Cdk levels. Journal of Cell Biology 188:2, pages 209-221.
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Wasia Rizwani & Srikumar P. Chellappan. 2009. Chromatin Protocols. Chromatin Protocols 203 216 .
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Jeffrey A. Shaman, Yasuhiro Yamauchi & W. Steven Ward. (2007) The sperm nuclear matrix is required for paternal DNA replication. Journal of Cellular Biochemistry 102:3, pages 680-688.
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Mirit I. Aladjem. (2007) Replication in context: dynamic regulation of DNA replication patterns in metazoans. Nature Reviews Genetics 8:8, pages 588-600.
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Paul J. Galgano & Carl L. Schildkraut. (2006) Synchronization of Mammalian Cell Cultures in Mitosis Using Selective Detachment. Cold Spring Harbor Protocols 2006:4, pages pdb.prot4489.
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Daniela S. Dimitrova. (2006) Nuclear transcription is essential for specification of mammalian replication origins. Genes to Cells 11:7, pages 829-844.
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Jens Baltin, Sandra Leist, Florian Odronitz, Hans-Peter Wollscheid, Martina Baack, Thomas Kapitza, Daniel Schaarschmidt & Rolf Knippers. (2006) DNA Replication in Protein Extracts from Human Cells Requires ORC and Mcm Proteins. Journal of Biological Chemistry 281:18, pages 12428-12435.
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Olivier Cuvier, Malik Lutzmann & Marcel Méchali. (2006) ORC Is Necessary at the Interphase-to-Mitosis Transition to Recruit cdc2 Kinase and Disassemble RPA Foci. Current Biology 16:5, pages 516-523.
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Yan REN & Jia Rui WU. (2004) Differential activation of intra-S-phase checkpoint in response to tripchlorolide and its effects on DNA replication. Cell Research 14:3, pages 227-233.
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Sanjay Vashee, Christin Cvetic, Wenyan Lu, Pamela Simancek, Thomas J. Kelly & Johannes C. Walter. (2003) Sequence-independent DNA binding and replication initiation by the human origin recognition complex. Genes & Development 17:15, pages 1894-1908.
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Nadia Tikhmyanova & Thomas R Coleman. (2003) Isoform switching of Cdc6 contributes to developmental cell cycle remodeling. Developmental Biology 260:2, pages 362-375.
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Melvin L DePamphilis. (2003) The ‘ORC cycle’: a novel pathway for regulating eukaryotic DNA replication. Gene 310, pages 1-15.
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Feng Li, Jianhua Chen, Eduardo Solessio & David M. Gilbert. (2003) Spatial distribution and specification of mammalian replication origins during G1 phase. Journal of Cell Biology 161:2, pages 257-266.
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Jonathan Black & Jean-Michel Vos. 2003. Pharmaceutical Gene Delivery Systems. Pharmaceutical Gene Delivery Systems.
Stephen P. BellAnindya Dutta. (2002) DNA Replication in Eukaryotic Cells. Annual Review of Biochemistry 71:1, pages 333-374.
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Wei-Hsin Sun, Thomas R. Coleman & Melvin L. DePamphilis. (2002) Cell cycle-dependent regulation of the association between origin recognition proteins and somatic cell chromatin. The EMBO Journal 21:6, pages 1437-1446.
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Daniela S. Dimitrova, Tatyana A. Prokhorova, J. Julian Blow, Ivan T. Todorov & David M. Gilbert. (2002) Mammalian nuclei become licensed for DNA replication during late telophase. Journal of Cell Science 115:1, pages 51-59.
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Susan M. Keezer & David M. Gilbert. (2002) Evidence for a pre-restriction point Cdk3 activity. Journal of Cellular Biochemistry 85:3, pages 545-552.
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Françoise Jaunin & Stanislav Fakan. (2002) DNA replication and nuclear architecture. Journal of Cellular Biochemistry 85:1, pages 1-9.
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Man-Rong Jiang, Ying Yang & Jia-Rui Wu. (2001) Activation of DNA Damage Checkpoints in CHO Cells Requires a Certain Level of DNA Damage. Biochemical and Biophysical Research Communications 287:3, pages 775-780.
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Jia-Rui Wu, Ji-Wu Wang & David M. Gilbert. (2001) Initiation of DNA replication inSaccharomyces cerevisiae G1-phase nuclei byXenopus egg extract. Journal of Cellular Biochemistry 80:1, pages 73-84.
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