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Transcriptional Regulation

Interaction of TATA-Binding Protein with Upstream Activation Factor Is Required for Activated Transcription of Ribosomal DNA by RNA Polymerase I in Saccharomyces cerevisiae In Vivo

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Pages 3752-3761 | Received 20 Oct 1997, Accepted 29 Mar 1998, Published online: 28 Mar 2023

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Bruce A. Knutson, Marissa L. Smith, Alana E. Belkevich & Aula M. Fakhouri. (2020) Molecular Topology of RNA Polymerase I Upstream Activation Factor. Molecular and Cellular Biology 40:13.
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Ashleigh J. Jackobel, Yan Han, Yuan He & Bruce A. Knutson. (2018) Breaking the mold: structures of the RNA polymerase I transcription complex reveal a new path for initiation. Transcription 9:4, pages 255-261.
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Robert D. Hontz, Sarah L. French, Melanie L. Oakes, Prasad Tongaonkar, Masayasu Nomura, Ann L. Beyer & Jeffrey S. Smith. (2008) Transcription of Multiple Yeast Ribosomal DNA Genes Requires Targeting of UAF to the Promoter by Uaf30. Molecular and Cellular Biology 28:21, pages 6709-6719.
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Andreas Meier & Fritz Thoma. (2005) RNA Polymerase I Transcription Factors in Active Yeast rRNA Gene Promoters Enhance UV Damage Formation and Inhibit Repair. Molecular and Cellular Biology 25:5, pages 1586-1595.
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Pavel Aprikian, Beth Moorefield & Ronald H. Reeder. (2001) New Model for the Yeast RNA Polymerase I Transcription Cycle. Molecular and Cellular Biology 21:15, pages 4847-4855.
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Michelle M. Tabb, Prasad Tongaonkar, Loan Vu & Masayasu Nomura. (2000) Evidence for Separable Functions of Srp1p, the Yeast Homolog of Importin α (Karyopherin α): Role for Srp1p and Sts1p in Protein Degradation. Molecular and Cellular Biology 20:16, pages 6062-6073.
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Pavel Aprikian, Beth Moorefield & Ronald H. Reeder. (2000) TATA Binding Protein Can Stimulate Core-Directed Transcription by Yeast RNA Polymerase I. Molecular and Cellular Biology 20:14, pages 5269-5275.
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Mathias Girbig, Agata D. Misiaszek & Christoph W. Müller. (2022) Structural insights into nuclear transcription by eukaryotic DNA-dependent RNA polymerases. Nature Reviews Molecular Cell Biology 23:9, pages 603-622.
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Michael Pilsl & Christoph Engel. (2020) Structural basis of RNA polymerase I pre-initiation complex formation and promoter melting. Nature Communications 11:1.
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Kevin Kramm, Christoph Engel & Dina Grohmann. (2019) Transcription initiation factor TBP: old friend new questions. Biochemical Society Transactions 47:1, pages 411-423.
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Basil J. Greber & Eva Nogales. 2019. Macromolecular Protein Complexes II: Structure and Function. Macromolecular Protein Complexes II: Structure and Function 143 192 .
Christoph EngelSimon NeyerPatrick Cramer. (2018) Distinct Mechanisms of Transcription Initiation by RNA Polymerases I and II. Annual Review of Biophysics 47:1, pages 425-446.
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Marissa L. Smith, Weidong Cui, Ashleigh J. Jackobel, Nancy Walker-Kopp & Bruce A. Knutson. (2018) Reconstitution of RNA Polymerase I Upstream Activating Factor and the Roles of Histones H3 and H4 in Complex Assembly. Journal of Molecular Biology 430:5, pages 641-654.
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Christoph Engel, Tobias Gubbey, Simon Neyer, Sarah Sainsbury, Christiane Oberthuer, Carlo Baejen, Carrie Bernecky & Patrick Cramer. (2017) Structural Basis of RNA Polymerase I Transcription Initiation. Cell 169:1, pages 120-131.e22.
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Ankita Srivastava, Alok Bhattacharya, Sudha Bhattacharya & Gagan Deep Jhingan. (2016) Identification of EhTIF-IA: The putative E. histolytica orthologue of the human ribosomal RNA transcription initiation factor-IA. Journal of Biosciences 41:1, pages 51-62.
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Katrina Rothblum, Qiyue Hu, Yvonne Penrod & Lawrence I. Rothblum. (2014) Selective Inhibition of rDNA Transcription by a Small-Molecule Peptide That Targets the Interface between RNA Polymerase I and Rrn3. Molecular Cancer Research 12:11, pages 1586-1596.
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Bruce A Knutson, Jie Luo, Jeffrey Ranish & Steven Hahn. (2014) Architecture of the Saccharomyces cerevisiae RNA polymerase I Core Factor complex. Nature Structural & Molecular Biology 21:9, pages 810-816.
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Bruce A. Knutson & Steven Hahn. (2013) TFIIB-related factors in RNA polymerase I transcription. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1829:3-4, pages 265-273.
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Varesa Chuwattanakul, Minetaka Sugiyama, Fahmida Khatun, Kenta Kurata, Isao Tomita, Yoshinobu Kaneko & Satoshi Harashima. (2012) Increased transcription of NOP15, involved in ribosome biogenesis in Saccharomyces cerevisiae, enhances the production yield of RNA as a source of nucleotide seasoning. Journal of Bioscience and Bioengineering 114:1, pages 17-22.
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Gregory J. Bedwell, Francis D. Appling, Susan J. Anderson & David A. Schneider. (2012) Efficient transcription by RNA polymerase I using recombinant core factor. Gene 492:1, pages 94-99.
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G. Rahim, S. Bischof, F. Kessler & B. Agne. (2008) In vivo interaction between atToc33 and atToc159 GTP-binding domains demonstrated in a plant split-ubiquitin system. Journal of Experimental Botany 60:1, pages 257-267.
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David A. Schneider & Masayasu Nomura. (2004) RNA polymerase I remains intact without subunit exchange through multiple rounds of transcription in Saccharomyces cerevisiae . Proceedings of the National Academy of Sciences 101:42, pages 15112-15117.
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Stephan Fath, Michael S. Kobor, Anja Philippi, Jack Greenblatt & Herbert Tschochner. (2004) Dephosphorylation of RNA Polymerase I by Fcp1p Is Required for Efficient rRNA Synthesis. Journal of Biological Chemistry 279:24, pages 25251-25259.
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Stephan Fath, Philipp Milkereit, Gerald Peyroche, Michel Riva, Christophe Carles & Herbert Tschochner. (2001) Differential roles of phosphorylation in the formation of transcriptional active RNA polymerase I. Proceedings of the National Academy of Sciences 98:25, pages 14334-14339.
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Licia Bordi, Francesco Cioci & Giorgio Camilloni. (2001) In Vivo Binding and Hierarchy of Assembly of the Yeast RNA Polymerase I Transcription Factors. Molecular Biology of the Cell 12:3, pages 753-760.
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M. NOMURA. (2001) Ribosomal RNA Genes, RNA Polymerases, Nucleolar Structures, and Synthesis of rRNA in the Yeast Saccharomyces cerevisiae. Cold Spring Harbor Symposia on Quantitative Biology 66:0, pages 555-566.
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Joan S. Steffan, Aleksey Kazantsev, Olivera Spasic-Boskovic, Marilee Greenwald, Ya-Zhen Zhu, Heike Gohler, Erich E. Wanker, Gillian P. Bates, David E. Housman & Leslie M. Thompson. (2000) The Huntington's disease protein interacts with p53 and CREB-binding protein and represses transcription. Proceedings of the National Academy of Sciences 97:12, pages 6763-6768.
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Stephan Fath, Philipp Milkereit, Alexandre V. Podtelejnikov, Nicolas Bischler, Patrick Schultz, Mirko Bier, Matthias Mann & Herbert Tschochner. (2000) Association of Yeast RNA Polymerase I with a Nucleolar Substructure Active in Rrna Synthesis and Processing. Journal of Cell Biology 149:3, pages 575-590.
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Beth Moorefield, Elizabeth A. Greene & Ronald H. Reeder. (2000) RNA polymerase I transcription factor Rrn3 is functionally conserved between yeast and human. Proceedings of the National Academy of Sciences 97:9, pages 4724-4729.
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Ailan Guo, Ling Chen, Annie Zhao, Boris Boukghalter & Louise Pape. (2000) Fission yeast contains an rDNA binding activity that interacts specifically with regulatory sequences for ribosomal RNA synthesis. Gene 242:1-2, pages 183-192.
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Lee McAlister-Henn, Natalie Gibson & Ellen Panisko. (1999) Applications of the Yeast Two-Hybrid System. Methods 19:2, pages 330-337.
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John Keener, Cathleen A. Josaitis, Jonathan A. Dodd & Masayasu Nomura. (1998) Reconstitution of Yeast RNA Polymerase I Transcription in Vitro from Purified Components. Journal of Biological Chemistry 273:50, pages 33795-33802.
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