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Transcriptional Regulation

Analysis of TFIIA Function In Vivo: Evidence for a Role in TATA-Binding Protein Recruitment and Gene-Specific Activation

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Pages 8673-8685 | Received 11 Jun 1999, Accepted 07 Sep 1999, Published online: 28 Mar 2023

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Wensheng Deng, Barbora Malecová, Thomas Oelgeschläger & Stefan G. E. Roberts. (2009) TFIIB Recognition Elements Control the TFIIA-NC2 Axis in Transcriptional Regulation. Molecular and Cellular Biology 29:6, pages 1389-1400.
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Mary C. Thomas & Cheng-Ming Chiang. (2006) The General Transcription Machinery and General Cofactors. Critical Reviews in Biochemistry and Molecular Biology 41:3, pages 105-178.
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M. M. Robinson, G. Yatherajam, R. T. Ranallo, A. Bric, M. R. Paule & L. A. Stargell. (2005) Mapping and Functional Characterization of the TAF11 Interaction with TFIIA. Molecular and Cellular Biology 25:3, pages 945-957.
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Debabrata Biswas, Anthony N. Imbalzano, Peter Eriksson, Yaxin Yu & David J. Stillman. (2004) Role for Nhp6, Gcn5, and the Swi/Snf Complex in Stimulating Formation of the TATA-Binding Protein-TFIIA-DNA Complex. Molecular and Cellular Biology 24:18, pages 8312-8321.
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J. Vaughn Spencer & Karen M. Arndt. (2002) A TATA Binding Protein Mutant with Increased Affinity for DNA Directs Transcription from a Reversed TATA Sequence In Vivo. Molecular and Cellular Biology 22:24, pages 8744-8755.
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Susan M. Kraemer, Ryan T. Ranallo, Ryan C. Ogg & Laurie A. Stargell. (2001) TFIIA Interacts with TFIID via Association with TATA-Binding Protein and TAF40. Molecular and Cellular Biology 21:5, pages 1737-1746.
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Chang-Hui Shen, Benoit P. Leblanc, Jennifer A. Alfieri & David J. Clark. (2001) Remodeling of Yeast CUP1 Chromatin Involves Activator-Dependent Repositioning of Nucleosomes over the Entire Gene and Flanking Sequences. Molecular and Cellular Biology 21:2, pages 534-547.
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Roberto F. Delgadillo, Katie A. Carnes, Nestor Valles-Villarreal, Omar Olmos, Kathia Zaleta-Rivera & Lawrence J. Parkhurst. (2020) Dual-Channel Stopped-Flow Apparatus for Simultaneous Fluorescence, Anisotropy, and FRET Kinetic Data Acquisition for Binary and Ternary Biological Complexes. Biosensors 10:11, pages 180.
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Subham Basu, Arijit Nandy & Debabrata Biswas. (2020) Keeping RNA polymerase II on the run: Functions of MLL fusion partners in transcriptional regulation. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1863:8, pages 194563.
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Natalia Petrenko, Yi Jin, Liguo Dong, Koon Ho Wong & Kevin Struhl. (2019) Requirements for RNA polymerase II preinitiation complex formation in vivo. eLife 8.
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Dao-Xiu Zhou. 2018. Annual Plant Reviews online. Annual Plant Reviews online 269 298 .
Justin H. Layer & P. Anthony Weil. (2013) Direct TFIIA-TFIID Protein Contacts Drive Budding Yeast Ribosomal Protein Gene Transcription. Journal of Biological Chemistry 288:32, pages 23273-23294.
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Héctor Marlosti Montiel Molina, César Millán-Pacheco, Nina Pastor & Gabriel del Rio. (2008) Computer-Based Screening of Functional Conformers of Proteins. PLoS Computational Biology 4:2, pages e1000009.
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John W. Tullai, Michael E. Schaffer, Steven Mullenbrock, Gabriel Sholder, Simon Kasif & Geoffrey M. Cooper. (2007) Immediate-Early and Delayed Primary Response Genes Are Distinct in Function and Genomic Architecture. Journal of Biological Chemistry 282:33, pages 23981-23995.
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Anjali S. Iyer-Pascuzzi & Susan R. McCouch. (2007) Recessive Resistance Genes and the Oryza sativa-Xanthomonas oryzae pv. oryzae Pathosystem . Molecular Plant-Microbe Interactions® 20:7, pages 731-739.
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Guang-Huai Jiang, Zhi-Hui Xia, Yong-Li Zhou, Jia Wan, Da-Yong Li, Run-Sheng Chen, Wen-Xue Zhai & Li-Huang Zhu. (2006) Testifying the rice bacterial blight resistance gene xa5 by genetic complementation and further analyzing xa5 (Xa5) in comparison with its homolog TFIIAγ1. Molecular Genetics and Genomics 275:4, pages 354-366.
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Samuel Y. Hou & Cheng-Ming Chiang. 2006. Gene Expression and Regulation. Gene Expression and Regulation 21 48 .
Linda Warfield, Jeffrey A. Ranish & Steven Hahn. (2004) Positive and negative functions of the SAGA complex mediated through interaction of Spt8 with TBP and the N-terminal domain of TFIIA. Genes & Development 18:9, pages 1022-1034.
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Joseph V Geisberg & Kevin Struhl. (2004) Cellular Stress Alters the Transcriptional Properties of Promoter-Bound Mot1-TBP Complexes. Molecular Cell 14:4, pages 479-489.
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Michael Bleichenbacher, Song Tan & Timothy J. Richmond. (2003) Novel Interactions Between the Components of Human and Yeast TFIIA/TBP/DNA Complexes. Journal of Molecular Biology 332:4, pages 783-793.
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A. Dasgupta & W.M. Scovell. (2003) TFIIA abrogates the effects of inhibition by HMGB1 but not E1A during the early stages of assembly of the transcriptional preinitiation complex. Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression 1627:2-3, pages 101-110.
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Ashok B Upadhyaya & Jeff DeJong. (2003) Expression of human TFIIA subunits in Saccharomyces cerevisiae identifies regions with conserved and species-specific functions. Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression 1625:1, pages 88-97.
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Dennis R. Winge. 2002. Copper-Containing Proteins. Copper-Containing Proteins 51 92 .
Minetaka Sugiyama & Jun-Ichi Nikawa. (2001) The Saccharomyces cerevisiae Isw2p-Itc1p Complex Represses INO1 Expression and Maintains Cell Morphology . Journal of Bacteriology 183:17, pages 4985-4993.
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Jennifer J. Stewart & Laurie A. Stargell. (2001) The Stability of the TFIIA-TBP-DNA Complex Is Dependent on the Sequence of the TATAAA Element. Journal of Biological Chemistry 276:32, pages 30078-30084.
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Keith A. Koch, Stephane Allard, Nicholas Santoro, Jacques Cote & Dennis J. Thiele. (2001) The Candida glabrata Amt1 copper-sensing transcription factor requires Swi/Snf and Gcn5 at a critical step in copper detoxification. Molecular Microbiology 40:5, pages 1165-1174.
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Joanne I. Adamkewicz, Karin E. Hansen, Wendy A. Prud'homme, Jennifer L. Davis & Jeremy Thorner. (2001) High Affinity Interaction of Yeast Transcriptional Regulator, Mot1, with TATA Box-binding Protein (TBP). Journal of Biological Chemistry 276:15, pages 11883-11894.
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Nina Pastor & Harel Weinstein. 2001. Theoretical Biochemistry - Processes and Properties of Biological Systems. Theoretical Biochemistry - Processes and Properties of Biological Systems 377 407 .
Benoit P. Leblanc, Craig J. Benham & David J. Clark. (2000) An initiation element in the yeast CUP1 promoter is recognized by RNA polymerase II in the absence of TATA box-binding protein if the DNA is negatively supercoiled . Proceedings of the National Academy of Sciences 97:20, pages 10745-10750.
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Stephen Buratowski. (2000) Snapshots of RNA polymerase II transcription initiation. Current Opinion in Cell Biology 12:3, pages 320-325.
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J Anthony Graves & Susan A Henry. (2000) Regulation of the Yeast INO1 Gene: The Products of the INO2, INO4 and OPI1 Regulatory Genes Are Not Required for Repression in Response to Inositol. Genetics 154:4, pages 1485-1495.
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