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DNA Dynamics and Chromosome Structure

Removal of Frameshift Intermediates by Mismatch Repair Proteins in Saccharomyces cerevisiae

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Pages 4766-4773 | Received 18 Feb 1999, Accepted 23 Apr 1999, Published online: 28 Mar 2023

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Axel Fürstberger, Markus Maucher & Hans A. Kestler. (2015) Extended pairwise local alignment of wild card DNA/RNA sequences using dynamic programming. Journal of Statistical Computation and Simulation 85:1, pages 3-13.
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Malcolm J. Lippert, Jennifer A. Freedman, Melissa A. Barber & Sue Jinks-Robertson. (2004) Identification of a Distinctive Mutation Spectrum Associated with High Levels of Transcription in Yeast. Molecular and Cellular Biology 24:11, pages 4801-4809.
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Hana Gragg, Brian D. Harfe & Sue Jinks-Robertson. (2002) Base Composition of Mononucleotide Runs Affects DNA Polymerase Slippage and Removal of Frameshift Intermediates by Mismatch Repair in Saccharomyces cerevisiae. Molecular and Cellular Biology 22:24, pages 8756-8762.
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Articles from other publishers (39)

Natalie A Lamb, Jonathan E Bard, Raphael Loll-Krippleber, Grant W Brown & Jennifer A Surtees. (2022) Complex mutation profiles in mismatch repair and ribonucleotide reductase mutants reveal novel repair substrate specificity of MutS homolog (MSH) complexes. Genetics 221:4.
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Anna K. Miller, Guogen Mao, Breanna G. Knicely, Hannah G. Daniels, Christine Rahal, Christopher D. Putnam, Richard D. Kolodner & Eva M. Goellner. (2022) Rad5 and Its Human Homologs, HLTF and SHPRH, Are Novel Interactors of Mismatch Repair. Frontiers in Cell and Developmental Biology 10.
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Samantha Shaltz & Sue Jinks-Robertson. (2021) Mutagenic repair of a ZFN-induced double-strand break in yeast: Effects of cleavage site sequence and spacer size. DNA Repair 108, pages 103228.
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Dominic Mao & Dennis W. Grogan. (2017) How a Genetically Stable Extremophile Evolves: Modes of Genome Diversification in the Archaeon Sulfolobus acidocaldarius. Journal of Bacteriology 199:17.
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Cynthia J Sakofsky & Dennis W Grogan. (2015) Lesion-Induced Mutation in the Hyperthermophilic Archaeon Sulfolobus acidocaldarius and Its Avoidance by the Y-Family DNA Polymerase Dbh . Genetics 201:2, pages 513-523.
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Lyudmila Y. Kadyrova, Basanta K. Dahal & Farid A. Kadyrov. (2015) Evidence That the DNA Mismatch Repair System Removes 1-Nucleotide Okazaki Fragment Flaps. Journal of Biological Chemistry 290:40, pages 24051-24065.
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Alan L. Harvey, RuAngelie Edrada-Ebel & Ronald J. Quinn. (2015) The re-emergence of natural products for drug discovery in the genomics era. Nature Reviews Drug Discovery 14:2, pages 111-129.
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Anjana Srivatsan, Nikki Bowen & Richard D. Kolodner. (2014) Mispair-specific Recruitment of the Mlh1-Pms1 Complex Identifies Repair Substrates of the Saccharomyces cerevisiae Msh2-Msh3 Complex. Journal of Biological Chemistry 289:13, pages 9352-9364.
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Nayun Kim, Jang-Eun Cho, Yue C. Li & Sue Jinks-Robertson. (2013) RNA∶DNA Hybrids Initiate Quasi-Palindrome-Associated Mutations in Highly Transcribed Yeast DNA. PLoS Genetics 9:11, pages e1003924.
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Nina V. Romanova & Gray F. Crouse. (2013) Different Roles of Eukaryotic MutS and MutL Complexes in Repair of Small Insertion and Deletion Loops in Yeast. PLoS Genetics 9:10, pages e1003920.
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Serge Boiteux & Sue Jinks-Robertson. (2013) DNA Repair Mechanisms and the Bypass of DNA Damage in Saccharomyces cerevisiae . Genetics 193:4, pages 1025-1064.
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Stanislav G Kozmin & Sue Jinks-Robertson. (2013) The Mechanism of Nucleotide Excision Repair-Mediated UV-Induced Mutagenesis in Nonproliferating Cells. Genetics 193:3, pages 803-817.
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Jang-Eun Cho, Nayun Kim, Yue C. Li & Sue Jinks-Robertson. (2013) Two distinct mechanisms of Topoisomerase 1-dependent mutagenesis in yeast. DNA Repair 12:3, pages 205-211.
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Nayun Kim, Sarah V. Mudrak & Sue Jinks-Robertson. (2011) The dCMP transferase activity of yeast Rev1 is biologically relevant during the bypass of endogenously generated AP sites. DNA Repair 10:12, pages 1262-1271.
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Nayun KimShar-yin N. HuangJessica S. WilliamsYue C. LiAlan B. ClarkJang-Eun ChoThomas A. KunkelYves PommierSue Jinks-Robertson. (2011) Mutagenic Processing of Ribonucleotides in DNA by Yeast Topoisomerase I. Science 332:6037, pages 1561-1564.
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Gaobin Bao & Yoke W. Kow. (2009) Effect of sequence context and direction of replication on AP site bypass in Saccharomyces cerevisiae. Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis 669:1-2, pages 147-154.
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Nayun Kim & Sue Jinks-Robertson. (2009) dUTP incorporation into genomic DNA is linked to transcription in yeast. Nature 459:7250, pages 1150-1153.
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Kevin Lehner & Sue Jinks-Robertson. (2009) The mismatch repair system promotes DNA polymerase ζ-dependent translesion synthesis in yeast. Proceedings of the National Academy of Sciences 106:14, pages 5749-5754.
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Debbie Sommer, Carrie M. Stith, Peter M. J. Burgers & Robert S. Lahue. (2008) Partial reconstitution of DNA large loop repair with purified proteins from Saccharomyces cerevisiae. Nucleic Acids Research 36:14, pages 4699-4707.
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Amy L. Abdulovic, Brenda K. Minesinger & Sue Jinks-Robertson. (2008) The effect of sequence context on spontaneous Polζ-dependent mutagenesis in Saccharomyces cerevisiae. Nucleic Acids Research 36:6, pages 2082-2093.
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Yoke W. Kow, Gaobin Bao, Jason W. Reeves, Sue Jinks-Robertson & Gray F. Crouse. (2007) Oligonucleotide transformation of yeast reveals mismatch repair complexes to be differentially active on DNA replication strands. Proceedings of the National Academy of Sciences 104:27, pages 11352-11357.
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Amy Abdulovic, Nayun Kim & Sue Jinks-Robertson. (2006) Mutagenesis and the three R's in yeast. DNA Repair 5:4, pages 409-421.
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Amy L Abdulovic & Sue Jinks-Robertson. (2006) The in Vivo Characterization of Translesion Synthesis Across UV-Induced Lesions in Saccharomyces cerevisiae : Insights Into Polζ- and Polη-Dependent Frameshift Mutagenesis . Genetics 172:3, pages 1487-1498.
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Brenda K. Minesinger, Amy L. Abdulovic, Tingwei M. Ou & Sue Jinks-Robertson. (2006) The effect of oxidative metabolism on spontaneous Polζ-dependent translesion synthesis in Saccharomyces cerevisiae. DNA Repair 5:2, pages 226-234.
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Simone Sabbioneda, Brenda K. Minesinger, Michele Giannattasio, Paolo Plevani, Marco Muzi-Falconi & Sue Jinks-Robertson. (2005) The 9-1-1 Checkpoint Clamp Physically Interacts with Polζ and Is Partially Required for Spontaneous Polζ-dependent Mutagenesis in Saccharomyces cerevisiae. Journal of Biological Chemistry 280:46, pages 38657-38665.
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Linnea E Jensen, Peter A Jauert & David T Kirkpatrick. (2005) The Large Loop Repair and Mismatch Repair Pathways of Saccharomyces cerevisiae Act on Distinct Substrates During Meiosis. Genetics 170:3, pages 1033-1043.
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Brenda K Minesinger & Sue Jinks-Robertson. (2005) Roles of RAD6 Epistasis Group Members in Spontaneous Polζ-Dependent Translesion Synthesis in Saccharomyces cerevisiae. Genetics 169:4, pages 1939-1955.
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Igor B. Rogozin & Youri I. Pavlov. (2003) Theoretical analysis of mutation hotspots and their DNA sequence context specificity. Mutation Research/Reviews in Mutation Research 544:1, pages 65-85.
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Yuan Liu & Robert A. Bambara. (2003) Analysis of Human Flap Endonuclease 1 Mutants Reveals a Mechanism to Prevent Triplet Repeat Expansion. Journal of Biological Chemistry 278:16, pages 13728-13739.
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Steven J Raynard & Mark D Baker. (2002) Incorporation of Large Heterologies Into Heteroduplex DNA During Double-Strand-Break Repair in Mouse Cells. Genetics 162:2, pages 977-985.
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Phuoc T. Tran, Jeffrey A. Simon & R. Michael Liskay. (2001) Interactions of Exo1p with components of MutLα in Saccharomyces cerevisiae . Proceedings of the National Academy of Sciences 98:17, pages 9760-9765.
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Jennifer A Clikeman, Sarah L Wheeler & Jac A Nickoloff. (2001) Efficient Incorporation of Large (>2 kb) Heterologies Into Heteroduplex DNA: Pms1 / Msh2 -Dependent and -Independent Large Loop Mismatch Repair in Saccharomyces cerevisiae . Genetics 157:4, pages 1481-1491.
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Colin A. Bill, Danielle G. Taghian, Walter A. Duran & Jac A. Nickoloff. (2001) Repair bias of large loop mismatches during recombination in mammalian cells depends on loop length and structure. Mutation Research/DNA Repair 485:3, pages 255-265.
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Brian D HarfeSue Jinks-Robertson. (2000) DNA MISMATCH REPAIR AND GENETIC INSTABILITY. Annual Review of Genetics 34:1, pages 359-399.
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Brian D Harfe & Sue Jinks-Robertson. (2000) DNA Polymerase ζ Introduces Multiple Mutations when Bypassing Spontaneous DNA Damage in Saccharomyces cerevisiae. Molecular Cell 6:6, pages 1491-1499.
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Brian D Harfe & Sue Jinks-Robertson. (2000) Sequence Composition and Context Effects on the Generation and Repair of Frameshift Intermediates in Mononucleotide Runs in Saccharomyces cerevisiae . Genetics 156:2, pages 571-578.
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Brian D Harfe & Sue Jinks-Robertson. (2000) Mismatch repair proteins and mitotic genome stability. Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis 451:1-2, pages 151-167.
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Brian D. Harfe, Brenda K. Minesinger & Sue Jinks-Robertson. (2000) Discrete in vivo roles for the MutL homologs Mlh2p and Mlh3p in the removal of frameshift intermediates in budding yeast. Current Biology 10:3, pages 145-148.
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Ainsley Nicholson, Miyono Hendrix, Sue Jinks-Robertson & Gray F Crouse. (2000) Regulation of Mitotic Homeologous Recombination in Yeast: Functions of Mismatch Repair and Nucleotide Excision Repair Genes. Genetics 154:1, pages 133-146.
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