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Molecular and Cellular Biology Volume 20, 2000 - Issue 24
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DNA Dynamics and Chromosome Structure

DNA Damage in the Nucleosome Core Is Refractory to Repair by Human Excision Nuclease

Ryujiro HaraDepartment of Biochemistry and Biophysics, University of North Carolina School of Medicine, Chapel Hill, North Carolina27599
,
Jinyao MoDepartment of Biochemistry and Biophysics, University of North Carolina School of Medicine, Chapel Hill, North Carolina27599
&
Aziz SancarDepartment of Biochemistry and Biophysics, University of North Carolina School of Medicine, Chapel Hill, North Carolina27599Correspondence[email protected]
Pages 9173-9181 | Received 17 Aug 2000, Accepted 29 Sep 2000, Published online: 28 Mar 2023

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Ann K. Hogan & Daniel R. Foltz. (2021) Reduce, Retain, Recycle: Mechanisms for Promoting Histone Protein Degradation versus Stability and Retention. Molecular and Cellular Biology 41:6.
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Maxime Tremblay, Yumin Teng, Michel Paquette, Raymond Waters & Antonio Conconi. (2008) Complementary Roles of Yeast Rad4p and Rad34p in Nucleotide Excision Repair of Active and Inactive rRNA Gene Chromatin. Molecular and Cellular Biology 28:24, pages 7504-7513.
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Agnes Klochendler-Yeivin, Eli Picarsky & Moshe Yaniv. (2006) Increased DNA Damage Sensitivity and Apoptosis in Cells Lacking the Snf5/Ini1 Subunit of the SWI/SNF Chromatin Remodeling Complex. Molecular and Cellular Biology 26:7, pages 2661-2674.
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Christoph Capiaghi, The Vinh Ho & Fritz Thoma. (2004) Kinetochores Prevent Repair of UV Damage in Saccharomyces cerevisiae Centromeres. Molecular and Cellular Biology 24:16, pages 6907-6918.
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Ryujiro Hara & Aziz Sancar. (2003) Effect of Damage Type on Stimulation of Human Excision Nuclease by SWI/SNF Chromatin Remodeling Factor. Molecular and Cellular Biology 23:12, pages 4121-4125.
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Ryujiro Hara & Aziz Sancar. (2002) The SWI/SNF Chromatin-Remodeling Factor Stimulates Repair by Human Excision Nuclease in the Mononucleosome Core Particle. Molecular and Cellular Biology 22:19, pages 6779-6787.
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Zusen Fan, Paul J. Beresford, Dong Zhang & Judy Lieberman. (2002) HMG2 Interacts with the Nucleosome Assembly Protein SET and Is a Target of the Cytotoxic T-Lymphocyte Protease Granzyme A. Molecular and Cellular Biology 22:8, pages 2810-2820.
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Christian A. Lee, Diala Abd-Rabbo & Jüri Reimand. (2021) Functional and genetic determinants of mutation rate variability in regulatory elements of cancer genomes. Genome Biology 22:1.
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Ujani Chakraborty, Zih-Jie Shen & Jessica Tyler. (2021) Chaperoning histones at the DNA repair dance. DNA Repair 108, pages 103240.
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Katja Apelt, Hannes Lans, Orlando D. Schärer & Martijn S. Luijsterburg. (2021) Nucleotide excision repair leaves a mark on chromatin: DNA damage detection in nucleosomes. Cellular and Molecular Life Sciences 78:24, pages 7925-7942.
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C. Fritsch, J.-F. Gout, S. Haroon, A. Towheed, C. ChungJ. LaGoshE. McGannX. Zhang, Y. SongS. SimpsonP. S. DanthiB. A. Benayoun, D. Wallace, K. Thomas, M. LynchM. Vermulst. (2020) Genome-wide surveillance of transcription errors in response to genotoxic stress. Proceedings of the National Academy of Sciences 118:1.
Crossref
Koji Nishimoto, Hiroyuki Niida, Chiharu Uchida, Tatsuya Ohhata, Kyoko Kitagawa, Akira Motegi, Takafumi Suda & Masatoshi Kitagawa. (2020) HDAC3 Is Required for XPC Recruitment and Nucleotide Excision Repair of DNA Damage Induced by UV Irradiation. Molecular Cancer Research 18:9, pages 1367-1378.
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P. S. Kesavan, Darshika Bohra, Sitara Roy & Aprotim Mazumder. (2020) Monitoring global changes in chromatin compaction states upon localized DNA damage with tools of fluorescence anisotropy. Molecular Biology of the Cell 31:13, pages 1403-1410.
Crossref
Marina Kolbanovskiy, Yoonjung Shim, Jung-Hyun Min, Nicholas E. Geacintov & Vladimir Shafirovich. (2020) Inhibition of Excision of Oxidatively Generated Hydantoin DNA Lesions by NEIL1 by the Competitive Binding of the Nucleotide Excision Repair Factor XPC-RAD23B. Biochemistry 59:18, pages 1728-1736.
Crossref
Yuqin Cai, Nicholas E. Geacintov & Suse Broyde. (2020) Variable impact of conformationally distinct DNA lesions on nucleosome structure and dynamics: Implications for nucleotide excision repair. DNA Repair 87, pages 102768.
Crossref
Corina Gsell, Holger Richly, Frédéric Coin & Hanspeter Naegeli. (2020) A chromatin scaffold for DNA damage recognition: how histone methyltransferases prime nucleosomes for repair of ultraviolet light-induced lesions. Nucleic Acids Research 48:4, pages 1652-1668.
Crossref
Peng Mao, Michael J. Smerdon, Steven A. Roberts & John J. Wyrick. (2020) Asymmetric repair of UV damage in nucleosomes imposes a DNA strand polarity on somatic mutations in skin cancer. Genome Research 30:1, pages 12-21.
Crossref
Masayuki Kusakabe, Yuki Onishi, Haruto Tada, Fumika Kurihara, Kanako Kusao, Mari Furukawa, Shigenori Iwai, Masayuki Yokoi, Wataru Sakai & Kaoru Sugasawa. (2019) Mechanism and regulation of DNA damage recognition in nucleotide excision repair. Genes and Environment 41:1.
Crossref
Nazli Deger, Yanyan Yang, Laura A. Lindsey-Boltz, Aziz Sancar & Christopher P. Selby. (2019) Drosophila, which lacks canonical transcription-coupled repair proteins, performs transcription-coupled repair. Journal of Biological Chemistry 294:48, pages 18092-18098.
Crossref
Peng Mao & John J. Wyrick. (2019) Organization of DNA damage, excision repair, and mutagenesis in chromatin: A genomic perspective. DNA Repair 81, pages 102645.
Crossref
Kathiresan Selvam, Sheikh Arafatur Rahman & Shisheng Li. (2019) Histone H4 H75E mutation attenuates global genomic and Rad26-independent transcription-coupled nucleotide excision repair. Nucleic Acids Research 47:14, pages 7392-7401.
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Yanyan Yang, Zhenxing Liu, Christopher P. Selby & Aziz Sancar. (2019) Long-term, genome-wide kinetic analysis of the effect of the circadian clock and transcription on the repair of cisplatin-DNA adducts in the mouse liver. Journal of Biological Chemistry 294:32, pages 11960-11968.
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Chryssostomos Chatgilialoglu, Carla Ferreri, Nicholas E. Geacintov, Marios G. Krokidis, Yuan Liu, Annalisa Masi, Vladimir Shafirovich, Michael A. Terzidis & Pawlos S. Tsegay. (2019) 5′,8-Cyclopurine Lesions in DNA Damage: Chemical, Analytical, Biological, and Diagnostic Significance. Cells 8:6, pages 513.
Crossref
Cristina Ribeiro-Silva, Wim Vermeulen & Hannes Lans. (2019) SWI/SNF: Complex complexes in genome stability and cancer. DNA Repair 77, pages 87-95.
Crossref
Steven A. Roberts, Alexander J. Brown & John J. Wyrick. (2019) Recurrent Noncoding Mutations in Skin Cancers: UV Damage Susceptibility or Repair Inhibition as Primary Driver?. BioEssays 41:3, pages 1800152.
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Yanyan Yang, Jinchuan Hu, Christopher P. Selby, Wentao Li, Askar Yimit, Yuchao Jiang & Aziz Sancar. (2019) Single-nucleotide resolution analysis of nucleotide excision repair of ribosomal DNA in humans and mice. Journal of Biological Chemistry 294:1, pages 210-217.
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Amelia J. Hodges, Dalton A. Plummer & John J. Wyrick. (2019) NuA4 acetyltransferase is required for efficient nucleotide excision repair in yeast. DNA Repair 73, pages 91-98.
Crossref
Kaoru Sugasawa. 2019. DNA Repair. DNA Repair 99 138 .
Kaoru Sugasawa. 2019. DNA Repair Disorders. DNA Repair Disorders 1 23 .
Anagh Ray, Preeti Khan & Ronita Nag Chaudhuri. (2018) Regulated acetylation and deacetylation of H4 K16 is essential for efficient NER in Saccharomyces cerevisiae. DNA Repair 72, pages 39-55.
Crossref
Oriol Pich, Ferran Muiños, Radhakrishnan Sabarinathan, Iker Reyes-Salazar, Abel Gonzalez-Perez & Nuria Lopez-Bigas. (2018) Somatic and Germline Mutation Periodicity Follow the Orientation of the DNA Minor Groove around Nucleosomes. Cell 175:4, pages 1074-1087.e18.
Crossref
Yi-Ying Chiou, Jinchuan Hu, Aziz Sancar & Christopher P. Selby. (2018) RNA polymerase II is released from the DNA template during transcription-coupled repair in mammalian cells. Journal of Biological Chemistry 293:7, pages 2476-2486.
Crossref
Nicholas E. Geacintov & Suse Broyde. (2017) Repair-Resistant DNA Lesions. Chemical Research in Toxicology 30:8, pages 1517-1548.
Crossref
Byungho Lim, Jihyeob Mun & Seon-Young Kim. (2017) Intrinsic Molecular Processes: Impact on Mutagenesis. Trends in Cancer 3:5, pages 357-371.
Crossref
Erina Kakumu, Seiya Nakanishi, Hiromi M. Shiratori, Akari Kato, Wataru Kobayashi, Shinichi Machida, Takeshi Yasuda, Naoko Adachi, Naoaki Saito, Tsuyoshi Ikura, Hitoshi Kurumizaka, Hiroshi Kimura, Masayuki Yokoi, Wataru Sakai & Kaoru Sugasawa. (2017) Xeroderma pigmentosum group C protein interacts with histones: regulation by acetylated states of histone H3. Genes to Cells 22:3, pages 310-327.
Crossref
Jimyeong Song, Michael G. Kemp & Jun-Hyuk Choi. (2017) Detection of the Excised, Damage-containing Oligonucleotide Products of Nucleotide Excision Repair in Human Cells. Photochemistry and Photobiology 93:1, pages 192-198.
Crossref
Xiaoting Shu, Xushen Xiong, Jinghui Song, Chuan He & Chengqi Yi. (2016) Base-Resolution Analysis of Cisplatin-DNA Adducts at the Genome Scale. Angewandte Chemie International Edition 55:46, pages 14246-14249.
Crossref
Xiaoting Shu, Xushen Xiong, Jinghui Song, Chuan He & Chengqi Yi. (2016) Base-Resolution Analysis of Cisplatin-DNA Adducts at the Genome Scale. Angewandte Chemie 128:46, pages 14458-14461.
Crossref
Peng Mao & John J. Wyrick. (2016) Emerging roles for histone modifications in DNA excision repair. FEMS Yeast Research 16:7, pages fow090.
Crossref
Kaoru Sugasawa. (2016) Molecular mechanisms of DNA damage recognition for mammalian nucleotide excision repair. DNA Repair 44, pages 110-117.
Crossref
Aziz Sancar. (2016) Mechanisms of DNA Repair by Photolyase and Excision Nuclease (Nobel Lecture). Angewandte Chemie International Edition 55:30, pages 8502-8527.
Crossref
Aziz Sancar. (2016) Mechanismen der DNA-Reparatur durch Photolyasen und Exzisionsnukleasen (Nobel-Aufsatz). Angewandte Chemie 128:30, pages 8643-8670.
Crossref
Erika M. Norabuena, Sara Barnes Williams, Margaret A. Klureza, Liana J. Goehring, Brian Gruessner, Mala L. Radhakrishnan, Elizabeth R. Jamieson & Megan E. Núñez. (2016) Effect of the Spiroiminodihydantoin Lesion on Nucleosome Stability and Positioning. Biochemistry 55:16, pages 2411-2421.
Crossref
Radhakrishnan Sabarinathan, Loris Mularoni, Jordi Deu-Pons, Abel Gonzalez-Perez & Núria López-Bigas. (2016) Nucleotide excision repair is impaired by binding of transcription factors to DNA. Nature 532:7598, pages 264-267.
Crossref
Sheera AdarJinchuan HuJason D. Lieb & Aziz Sancar. (2016) Genome-wide kinetics of DNA excision repair in relation to chromatin state and mutagenesis. Proceedings of the National Academy of Sciences 113:15.
Crossref
Wataru Sakai & Kaoru Sugasawa. 2016. DNA Replication, Recombination, and Repair. DNA Replication, Recombination, and Repair 155 174 .
Xiaoqi Liu. (2015) In vitro chromatin templates to study nucleotide excision repair. DNA Repair 36, pages 68-76.
Crossref
John-Stephen Taylor. (2015) Design, synthesis, and characterization of nucleosomes containing site-specific DNA damage. DNA Repair 36, pages 59-67.
Crossref
Yaru Zhang & Patrick J. O’Brien. (2015) Repair of Alkylation Damage in Eukaryotic Chromatin Depends on Searching Ability of Alkyladenine DNA Glycosylase. ACS Chemical Biology 10:11, pages 2606-2615.
Crossref
Akihisa Osakabe, Hiroaki Tachiwana, Wataru Kagawa, Naoki Horikoshi, Syota Matsumoto, Mayu Hasegawa, Naoyuki Matsumoto, Tatsuya Toga, Junpei Yamamoto, Fumio Hanaoka, Nicolas H. Thomä, Kaoru Sugasawa, Shigenori Iwai & Hitoshi Kurumizaka. (2015) Structural basis of pyrimidine-pyrimidone (6–4) photoproduct recognition by UV-DDB in the nucleosome. Scientific Reports 5:1.
Crossref
Yuqin Cai, Konstantin Kropachev, Michael A. Terzidis, Annalisa Masi, Chryssostomos Chatgilialoglu, Vladimir Shafirovich, Nicholas E. Geacintov & Suse Broyde. (2015) Differences in the Access of Lesions to the Nucleotide Excision Repair Machinery in Nucleosomes. Biochemistry 54:27, pages 4181-4185.
Crossref
Palak Shah & Yu-Ying He. (2015) Molecular Regulation of UV-Induced DNA Repair. Photochemistry and Photobiology 91:2, pages 254-264.
Crossref
Masaki AKITA & Kaoru SUGASAWA. (2015) Molecular Basis of DNA Quality Control for Mammalian Nucleotide Excision Repair. Seibutsu Butsuri 55:3, pages 137-141.
Crossref
Giovanni Scala, Ornella Affinito, Gennaro Miele, Antonella Monticelli & Sergio Cocozza. (2014) Evidence for Evolutionary and Nonevolutionary Forces Shaping the Distribution of Human Genetic Variants near Transcription Start Sites. PLoS ONE 9:12, pages e114432.
Crossref
Kimberly H. Kim & Charles W.M. Roberts. (2014) Mechanisms by which SMARCB1 loss drives rhabdoid tumor growth. Cancer Genetics 207:9, pages 365-372.
Crossref
Konstantin Kropachev, Shuang Ding, Michael A. Terzidis, Annalisa Masi, Zhi Liu, Yuqin Cai, Marina Kolbanovskiy, Chryssostomos Chatgilialoglu, Suse Broyde, Nicholas E. Geacintov & Vladimir Shafirovich. (2014) Structural basis for the recognition of diastereomeric 5′,8-cyclo-2′-deoxypurine lesions by the human nucleotide excision repair system. Nucleic Acids Research 42:8, pages 5020-5032.
Crossref
Luciana O. Almeida, Aline C. Abrahao, Luciana K. Rosselli-Murai, Fernanda S. Giudice, Chiara Zagni, Andreia M. Leopoldino, Cristiane H. Squarize & Rogerio M. Castilho. (2014) NFκB mediates cisplatin resistance through histone modifications in head and neck squamous cell carcinoma (HNSCC). FEBS Open Bio 4:1, pages 96-104.
Crossref
Gyeong Jin Yu & Chun Bok Lee. (2013) Protective Effects of Vitamin C against Genomic DNA Damage Caused by Genotoxicants. Journal of Life Science 23:8, pages 963-969.
Crossref
Jinchuan Hu, Jun-Hyuk Choi, Shobhan Gaddameedhi, Michael G. Kemp, Joyce T. Reardon & Aziz Sancar. (2013) Nucleotide Excision Repair in Human Cells. Journal of Biological Chemistry 288:29, pages 20918-20926.
Crossref
Yucai Wang, Justin W. Leung, Yingjun Jiang, Megan G. Lowery, Huong Do, Karen M. Vasquez, Junjie Chen, Weidong Wang & Lei Li. (2013) FANCM and FAAP24 Maintain Genome Stability via Cooperative as Well as Unique Functions. Molecular Cell 49:5, pages 997-1009.
Crossref
Irene Kamileri, Ismene Karakasilioti & George A. Garinis. (2012) Nucleotide excision repair: new tricks with old bricks. Trends in Genetics 28:11, pages 566-573.
Crossref
Christoffel Dinant, Jiri Bartek & Simon Bekker-Jensen. (2012) Histone Displacement during Nucleotide Excision Repair. International Journal of Molecular Sciences 13:12, pages 13322-13337.
Crossref
Wioletta Czaja, Peng Mao & Michael J. Smerdon. (2012) The Emerging Roles of ATP-Dependent Chromatin Remodeling Enzymes in Nucleotide Excision Repair. International Journal of Molecular Sciences 13:12, pages 11954-11973.
Crossref
Markus W. Germann, Christopher N. Johnson & Alexander M. Spring. (2012) Recognition of Damaged DNA: Structure and Dynamic Markers. Medicinal Research Reviews 32:3, pages 659-683.
Crossref
Martijn S. Luijsterburg, Michael Lindh, Klara Acs, Mischa G. Vrouwe, Alex Pines, Haico van Attikum, Leon H. Mullenders & Nico P. Dantuma. (2012) DDB2 promotes chromatin decondensation at UV-induced DNA damage. Journal of Cell Biology 197:2, pages 267-281.
Crossref
Li Lan, Satoshi Nakajima, Maria G. Kapetanaki, Ching L. Hsieh, Matthew Fagerburg, Karen Thickman, Pedro Rodriguez-Collazo, Sanford H. Leuba, Arthur S. Levine & Vesna Rapić-Otrin. (2012) Monoubiquitinated Histone H2A Destabilizes Photolesion-containing Nucleosomes with Concomitant Release of UV-damaged DNA-binding Protein E3 Ligase. Journal of Biological Chemistry 287:15, pages 12036-12049.
Crossref
Aruna Battu, Alo Ray & Altaf A. Wani. (2011) ASF1A and ATM regulate H3K56-mediated cell-cycle checkpoint recovery in response to UV irradiation. Nucleic Acids Research 39:18, pages 7931-7945.
Crossref
Simon H. Reed. (2011) Nucleotide excision repair in chromatin: Damage removal at the drop of a HAT. DNA Repair 10:7, pages 734-742.
Crossref
Hanspeter Naegeli & Kaoru Sugasawa. (2011) The xeroderma pigmentosum pathway: Decision tree analysis of DNA quality. DNA Repair 10:7, pages 673-683.
Crossref
V. G. Korolev. (2011) Chromatin and DNA damage repair. Russian Journal of Genetics 47:4, pages 394-403.
Crossref
Ruifeng Guo, Jie Chen, David L. Mitchell & David G. Johnson. (2011) GCN5 and E2F1 stimulate nucleotide excision repair by promoting H3K9 acetylation at sites of damage. Nucleic Acids Research 39:4, pages 1390-1397.
Crossref
K. Sugasawa. (2011) Multiple DNA damage recognition factors involved in mammalian nucleotide excision repair. Biochemistry (Moscow) 76:1, pages 16-23.
Crossref
Yuqin Cai, Lihua Wang, Shuang Ding, Adam Schwaid, Nicholas E. Geacintov & Suse Broyde. (2010) A Bulky DNA Lesion Derived from a Highly Potent Polycyclic Aromatic Tumorigen Stabilizes Nucleosome Core Particle Structure. Biochemistry 49:46, pages 9943-9945.
Crossref
Yingjun Jiang, Xin Wang, Shilai Bao, Ruifeng Guo, David G. Johnson, Xuetong Shen & Lei Li. (2010) INO80 chromatin remodeling complex promotes the removal of UV lesions by the nucleotide excision repair pathway. Proceedings of the National Academy of Sciences 107:40, pages 17274-17279.
Crossref
Kaifu Chen, Lei Wang, Meng Yang, Jiucheng Liu, Chengqi Xin, Songnian Hu & Jun Yu. (2010) Sequence Signatures of Nucleosome Positioning in Caenorhabditis elegans. Genomics, Proteomics & Bioinformatics 8:2, pages 92-102.
Crossref
Nicolas Le May, Jean-Marc Egly & Frédéric Coin. (2010) True Lies: The Double Life of the Nucleotide Excision Repair Factors in Transcription and DNA Repair. Journal of Nucleic Acids 2010, pages 1-10.
Crossref
Qun Zhao, Qi-En Wang, Alo Ray, Gulzar Wani, Chunhua Han, Keisha Milum & Altaf A. Wani. (2009) Modulation of Nucleotide Excision Repair by Mammalian SWI/SNF Chromatin-remodeling Complex. Journal of Biological Chemistry 284:44, pages 30424-30432.
Crossref
Ronita Nag & Michael J. Smerdon. (2009) Altering the chromatin landscape for nucleotide excision repair. Mutation Research/Reviews in Mutation Research 682:1, pages 13-20.
Crossref
Maxime TremblayMartin ToussaintAnnie D’AmoursAntonio Conconi. (2009) Nucleotide excision repair and photolyase repair of UV photoproducts in nucleosomes: assessing the existence of nucleosome and non-nucleosome rDNA chromatin in vivoThis paper is one of a selection of papers published in this Special Issue, entitled 29th Annual International Asilomar Chromatin and Chromosomes Conference, and has undergone the Journal’s usual peer review process.. Biochemistry and Cell Biology 87:1, pages 337-346.
Crossref
Mischa G. Vrouwe & Leon H.F. Mullenders. 2009. The DNA Damage Response: Implications on Cancer Formation and Treatment. The DNA Damage Response: Implications on Cancer Formation and Treatment 235 259 .
Qun Zhao, Bassant M. Barakat, Song Qin, Alo Ray, Mohamed A. El-Mahdy, Gulzar Wani, El-Shaimaa Arafa, Safita N. Mir, Qi-En Wang & Altaf A. Wani. (2008) The p38 Mitogen-activated Protein Kinase Augments Nucleotide Excision Repair by Mediating DDB2 Degradation and Chromatin Relaxation. Journal of Biological Chemistry 283:47, pages 32553-32561.
Crossref
Alexandre E. Escargueil, Daniele Grazziotin Soares, Mirian Salvador, Annette K. Larsen & João Antonio Pegas Henriques. (2008) What histone code for DNA repair?. Mutation Research/Reviews in Mutation Research 658:3, pages 259-270.
Crossref
Kevin J. Kesseler, William K. Kaufmann, Joyce T. Reardon, Timothy C. Elston & Aziz Sancar. (2007) A mathematical model for human nucleotide excision repair: Damage recognition by random order assembly and kinetic proofreading. Journal of Theoretical Biology 249:2, pages 361-375.
Crossref
David J. Baker, Gerald Wuenschell, Liqun Xia, John Termini, Steven E. Bates, Arthur D. Riggs & Timothy R. O’Connor. (2007) Nucleotide Excision Repair Eliminates Unique DNA-Protein Cross-links from Mammalian Cells. Journal of Biological Chemistry 282:31, pages 22592-22604.
Crossref
Jeffrey G. Linger & Jessica K. Tyler. (2007) Chromatin disassembly and reassembly during DNA repair. Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis 618:1-2, pages 52-64.
Crossref
Cara A. Rabik & M. Eileen Dolan. (2007) Molecular mechanisms of resistance and toxicity associated with platinating agents. Cancer Treatment Reviews 33:1, pages 9-23.
Crossref
Xiaoai Chen, Jianxuan Zhang, Jennifer Lee, Patrick S. Lin, James M. Ford, Ning Zheng & Pengbo Zhou. (2006) A Kinase-Independent Function of c-Abl in Promoting Proteolytic Destruction of Damaged DNA Binding Proteins. Molecular Cell 22:4, pages 489-499.
Crossref
Hengbin Wang, Ling Zhai, Jun Xu, Heui-Yun Joo, Sarah Jackson, Hediye Erdjument-Bromage, Paul Tempst, Yue Xiong & Yi Zhang. (2006) Histone H3 and H4 Ubiquitylation by the CUL4-DDB-ROC1 Ubiquitin Ligase Facilitates Cellular Response to DNA Damage. Molecular Cell 22:3, pages 383-394.
Crossref
Ludovic C. J. Gillet & Orlando D. Schärer. (2005) Molecular Mechanisms of Mammalian Global Genome Nucleotide Excision Repair. Chemical Reviews 106:2, pages 253-276.
Crossref
Željko M. Svedružić, Chenbo Wang, Joseph V. Kosmoski & Michael J. Smerdon. (2005) Accommodation and Repair of a UV Photoproduct in DNA at Different Rotational Settings on the Nucleosome Surface. Journal of Biological Chemistry 280:48, pages 40051-40057.
Crossref
Jennifer E. Adair, YoungHo Kwon, Gregory A. Dement, Michael J. Smerdon & Raymond Reeves. (2005) Inhibition of Nucleotide Excision Repair by High Mobility Group Protein HMGA1. Journal of Biological Chemistry 280:37, pages 32184-32192.
Crossref
YoungHo Kwon & Michael J. Smerdon. (2005) DNA repair in a protein–DNA complex: searching for the key to get in. Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis 577:1-2, pages 118-130.
Crossref
Andrew J. Danford, Dong Wang, Qun Wang, Thomas D. Tullius & Stephen J. Lippard. (2005) Platinum anticancer drug damage enforces a particular rotational setting of DNA in nucleosomes. Proceedings of the National Academy of Sciences 102:35, pages 12311-12316.
Crossref
Raymond Reeves & Jennifer E. Adair. (2005) Role of high mobility group (HMG) chromatin proteins in DNA repair. DNA Repair 4:8, pages 926-938.
Crossref
Simon H. Reed. (2005) Nucleotide excision repair in chromatin: The shape of things to come. DNA Repair 4:8, pages 909-918.
Crossref
Antonio Conconi. (2005) The yeast rDNA locus: A model system to study DNA repair in chromatin. DNA Repair 4:8, pages 897-908.
Crossref
Feng Gong, YoungHo Kwon & Michael J. Smerdon. (2005) Nucleotide excision repair in chromatin and the right of entry. DNA Repair 4:8, pages 884-896.
Crossref
Fritz Thoma. (2005) Repair of UV lesions in nucleosomes – intrinsic properties and remodeling. DNA Repair 4:8, pages 855-869.
Crossref
Christian Holmberg, Oliver Fleck, Heidi A. Hansen, Cong Liu, Rita Slaaby, Antony M. Carr & Olaf Nielsen. (2005) Ddb1 controls genome stability and meiosis in fission yeast. Genes & Development 19:7, pages 853-862.
Crossref
Takeshi Yasuda, Kaoru Sugasawa, Yuichiro Shimizu, Shigenori Iwai, Tadahiro Shiomi & Fumio Hanaoka. (2005) Nucleosomal structure of undamaged DNA regions suppresses the non-specific DNA binding of the XPC complex. DNA Repair 4:3, pages 389-395.
Crossref
Boris Kysela, Miroslav Chovanec & Penny A. Jeggo. (2005) Phosphorylation of linker histones by DNA-dependent protein kinase is required for DNA ligase IV-dependent ligation in the presence of histone H1. Proceedings of the National Academy of Sciences 102:6, pages 1877-1882.
Crossref
Momchil D. Vodenicharov, Medini M. Ghodgaonkar, Sabina S. Halappanavar, Rashmi G. Shah & Girish M. Shah. (2005) Mechanism of early biphasic activation of poly(ADP-ribose) polymerase-1 in response to ultraviolet B radiation. Journal of Cell Science 118:3, pages 589-599.
Crossref
Sahar Bassal & Assam El‐Osta. (2005) DNA damage detection and repair, and the involvement of epigenetic states. Human Mutation 25:2, pages 101-109.
Crossref
Joyce T. Reardon & Aziz Sancar. 2005. 183 235 .
Aziz SancarLaura A. Lindsey-BoltzKeziban Ünsal-KaçmazStuart Linn. (2004) Molecular Mechanisms of Mammalian DNA Repair and the DNA Damage Checkpoints. Annual Review of Biochemistry 73:1, pages 39-85.
Crossref
Craig L. Peterson & Jacques Côté. (2004) Cellular machineries for chromosomal DNA repair. Genes & Development 18:6, pages 602-616.
Crossref
Aziz Sancar & Joyce T. Reardon. 2004. DNA Repair and Replication. DNA Repair and Replication 43 71 .
Joyce T. Reardon & Aziz Sancar. (2003) Recognition and repair of the cyclobutane thymine dimer, a major cause of skin cancers, by the human excision nuclease. Genes & Development 17:20, pages 2539-2551.
Crossref
Magdalena Livingstone-Zatchej, Rosanna Marcionelli, Kathrin Möller, Remko de Pril & Fritz Thoma. (2003) Repair of UV Lesions in Silenced Chromatin Provides in Vivo Evidence for a Compact Chromatin Structure. Journal of Biological Chemistry 278:39, pages 37471-37479.
Crossref
Hélène Gaillard, Daniel J. Fitzgerald, Corey L. Smith, Craig L. Peterson, Timothy J. Richmond & Fritz Thoma. (2003) Chromatin Remodeling Activities Act on UV-damaged Nucleosomes and Modulate DNA Damage Accessibility to Photolyase. Journal of Biological Chemistry 278:20, pages 17655-17663.
Crossref
Zusen Fan, Paul J. Beresford, David Y. Oh, Dong Zhang & Judy Lieberman. (2003) Tumor Suppressor NM23-H1 Is a Granzyme A-Activated DNase during CTL-Mediated Apoptosis, and the Nucleosome Assembly Protein SET Is Its Inhibitor. Cell 112:5, pages 659-672.
Crossref
C.P Selby & Aziz Sancar. 2003. RNA Polymerases and Associated Factors, Part D. RNA Polymerases and Associated Factors, Part D 300 324 .
Wenwei Hu, Zhaohui Feng, Lawrence A. Chasin & Moon-shong Tang. (2002) Transcription-coupled and Transcription-independent Repair of Cyclobutane Pyrimidine Dimers in the Dihydrofolate Reductase Gene. Journal of Biological Chemistry 277:41, pages 38305-38310.
Crossref
Sankar Mitra, Tadahide Izumi, Istvan Boldogh, Kishor K Bhakat, Jeff W Hill & Tapas K Hazra. (2002) Choreography of oxidative damage repair in mammalian genomes1,2 1Guest Editor: Miral Dizdaroglu 2This article is part of a series of reviews on “Oxidative DNA Damage and Repair.” The full list of papers may be found on the homepage of the journal.. Free Radical Biology and Medicine 33:1, pages 15-28.
Crossref
Kiyoe Ura & Jeffrey J. Hayes. (2002) Nucleotide excision repair and chromatin remodeling. European Journal of Biochemistry 269:9, pages 2288-2293.
Crossref
Bernhard Suter & Fritz Thoma. (2002) DNA-repair by Photolyase Reveals Dynamic Properties of Nucleosome Positioning in Vivo. Journal of Molecular Biology 319:2, pages 395-406.
Crossref
Emmanuelle M D Martini, Scott Keeney & Mary Ann Osley. (2002) A Role for Histone H2B During Repair of UV-Induced DNA Damage in Saccharomyces cerevisiae . Genetics 160:4, pages 1375-1387.
Crossref
Zhaohui Feng, Wenwei Hu, Elena Komissarova, Annie Pao, Mien-Chie Hung, Gerald M. Adair & Moon-shong Tang. (2002) Transcription-coupled DNA Repair Is Genomic Context-dependent. Journal of Biological Chemistry 277:15, pages 12777-12783.
Crossref
Catherine M Green & Geneviève Almouzni. (2002) When repair meets chromatin. EMBO reports 3:1, pages 28-33.
Crossref
Xiaoai Chen, Yue Zhang, Leonille Douglas & Pengbo Zhou. (2001) UV-damaged DNA-binding Proteins Are Targets of CUL-4A-mediated Ubiquitination and Degradation. Journal of Biological Chemistry 276:51, pages 48175-48182.
Crossref
Joseph V. Kosmoski, Eric J. Ackerman & Michael J. Smerdon. (2001) DNA repair of a single UV photoproduct in a designed nucleosome. Proceedings of the National Academy of Sciences 98:18, pages 10113-10118.
Crossref
Laetitia Davidovic, Momchil Vodenicharov, El Bachir Affar & Guy G. Poirier. (2001) Importance of Poly(ADP-Ribose) Glycohydrolase in the Control of Poly(ADP-Ribose) Metabolism. Experimental Cell Research 268:1, pages 7-13.
Crossref
Yi Zheng, Annie Pao, Gerald M. Adair & Moon-shong Tang. (2001) Cyclobutane Pyrimidine Dimers and Bulky Chemical DNA Adducts Are Efficiently Repaired in Both Strands of Either a Transcriptionally Active or Promoter-deleted APRT Gene. Journal of Biological Chemistry 276:20, pages 16786-16796.
Crossref
Mitsuo Wakasugi, Mayuko Shimizu, Hiroshi Morioka, Stuart Linn, Osamu Nikaido & Tsukasa Matsunaga. (2001) Damaged DNA-binding Protein DDB Stimulates the Excision of Cyclobutane Pyrimidine Dimers in Vitro in Concert with XPA and Replication Protein A. Journal of Biological Chemistry 276:18, pages 15434-15440.
Crossref
Sankar Mitra, Istvan Boldogh, Tadahide Izumi & Tapas K. Hazra. (2001) Complexities of the DNA base excision repair pathway for repair of oxidative DNA damage. Environmental and Molecular Mutagenesis 38:2-3, pages 180-190.
Crossref

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