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Molecular and Cellular Biology Volume 21, 2001 - Issue 16
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Gene Expression

Yeast RNA Polymerase I Enhancer Is Dispensable for Transcription of the Chromosomal rRNA Gene and Cell Growth, and Its Apparent Transcription Enhancement from Ectopic Promoters Requires Fob1 Protein

Hobert Wai1 Department of Biological Chemistry, University of California—Irvine, Irvine, California92697-1700
,
Katsuki Johzuka1 Department of Biological Chemistry, University of California—Irvine, Irvine, California92697-1700
,
Loan Vu1 Department of Biological Chemistry, University of California—Irvine, Irvine, California92697-1700
,
Kristilyn Eliason1 Department of Biological Chemistry, University of California—Irvine, Irvine, California92697-1700
,
Takehiko Kobayashi2 National Institute for Basic Biology, Okazaki444-8585, Japan
,
Takashi Horiuchi2 National Institute for Basic Biology, Okazaki444-8585, Japan
&
Masayasu Nomura1 Department of Biological Chemistry, University of California—Irvine, Irvine, California92697-1700Correspondence[email protected]
 show all
Pages 5541-5553 | Received 26 Mar 2001, Accepted 21 May 2001, Published online: 28 Mar 2023

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Melanie L. Oakes, Katsuki Johzuka, Loan Vu, Kristilyn Eliason & Masayasu Nomura. (2006) Expression of rRNA Genes and Nucleolus Formation at Ectopic Chromosomal Sites in the Yeast Saccharomyces cerevisiae. Molecular and Cellular Biology 26:16, pages 6223-6238.
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Alicia Sánchez-Gorostiaga, Carlos López-Estraño, Dora B. Krimer, Jorge B. Schvartzman & Pablo Hernández. (2004) Transcription Termination Factor reb1p Causes Two Replication Fork Barriers at Its Cognate Sites in Fission Yeast Ribosomal DNA In Vivo. Molecular and Cellular Biology 24:1, pages 398-406.
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Takehiko Kobayashi. (2003) The Replication Fork Barrier Site Forms a Unique Structure with Fob1p and Inhibits the Replication Fork. Molecular and Cellular Biology 23:24, pages 9178-9188.
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Laura L. Mays Hoopes, Martin Budd, Wonchae Choe, Tao Weitao & Judith L. Campbell. (2002) Mutations in DNA Replication Genes Reduce Yeast Life Span. Molecular and Cellular Biology 22:12, pages 4136-4146.
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Articles from other publishers (26)

Jennifer E G Gallagher. (2018) Proteins and RNA sequences required for the transition of the t-Utp complex into the SSU processome. FEMS Yeast Research 19:1.
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Stephan Hamperl, Christopher R. Brown, Ana Villar Garea, Jorge Perez-Fernandez, Astrid Bruckmann, Katharina Huber, Manuel Wittner, Virginia Babl, Ulrike Stoeckl, Rainer Deutzmann, Hinrich Boeger, Herbert Tschochner, Philipp Milkereit & Joachim Griesenbeck. (2014) Compositional and structural analysis of selected chromosomal domains from Saccharomyces cerevisiae. Nucleic Acids Research 42:1, pages e2-e2.
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Hélène Gaillard, Emilia Herrera-Moyano & Andrés Aguilera. (2013) Transcription-Associated Genome Instability. Chemical Reviews 113:11, pages 8638-8661.
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Fahmida Khatun, Yu Sasano, Minetaka Sugiyama, Yoshinobu Kaneko & Satoshi Harashima. (2013) Increase in rRNA content in a Saccharomyces cerevisiae suppressor strain from rrn10 disruptant by rDNA cluster duplication. Applied Microbiology and Biotechnology 97:20, pages 9011-9019.
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Attila Németh, Jorge Perez-Fernandez, Philipp Merkl, Stephan Hamperl, Jochen Gerber, Joachim Griesenbeck & Herbert Tschochner. (2013) RNA polymerase I termination: Where is the end?. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1829:3-4, pages 306-317.
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Takaaki Miyazaki & Takehiko Kobayashi. (2011) Visualization of the dynamic behavior of ribosomal RNA gene repeats in living yeast cells. Genes to Cells 16:5, pages 491-502.
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Priscilla Braglia, Junya Kawauchi & Nick J. Proudfoot. (2011) Co-transcriptional RNA cleavage provides a failsafe termination mechanism for yeast RNA polymerase I. Nucleic Acids Research 39:4, pages 1439-1448.
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Michael Bulger & Mark Groudine. (2011) Functional and Mechanistic Diversity of Distal Transcription Enhancers. Cell 144:3, pages 327-339.
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Austen R.D. Ganley, Satoru Ide, Kimiko Saka & Takehiko Kobayashi. (2009) The Effect of Replication Initiation on Gene Amplification in the rDNA and Its Relationship to Aging. Molecular Cell 35:5, pages 683-693.
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Katsuki Johzuka & Takashi Horiuchi. (2009) The cis Element and Factors Required for Condensin Recruitment to Chromosomes. Molecular Cell 34:1, pages 26-35.
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Katharina Merz, Maria Hondele, Hannah Goetze, Katharina Gmelch, Ulrike Stoeckl & Joachim Griesenbeck. (2008) Actively transcribed rRNA genes in S. cerevisiae are organized in a specialized chromatin associated with the high-mobility group protein Hmo1 and are largely devoid of histone molecules . Genes & Development 22:9, pages 1190-1204.
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Junya Kawauchi, Hannah Mischo, Priscilla Braglia, Ana Rondon & Nick J. Proudfoot. (2008) Budding yeast RNA polymerases I and II employ parallel mechanisms of transcriptional termination. Genes & Development 22:8, pages 1082-1092.
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Karim Labib & Ben Hodgson. (2007) Replication fork barriers: pausing for a break or stalling for time?. EMBO reports 8:4, pages 346-353.
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Joseph L. Campbell, Alexander Lorenz, Keren L. Witkin, Thomas Hays, Josef Loidl & Orna Cohen-Fix. (2006) Yeast Nuclear Envelope Subdomains with Distinct Abilities to Resist Membrane Expansion. Molecular Biology of the Cell 17:4, pages 1768-1778.
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C. E. Hepfer, S. Arnold-Croop, H. Fogell, K. G. Steudel, M. Moon, A. Roff, S. Zaikoski, A. Rickman, K. Komsisky, D. L. Harbaugh, G. I. Lang & R. L. Keil. (2005) DEG1, encoding the tRNA:pseudouridine synthase Pus3p, impacts HOT1-stimulated recombination in Saccharomyces cerevisiae. Molecular Genetics and Genomics 274:5, pages 528-538.
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Austen R. D. Ganley, Kouji Hayashi, Takashi Horiuchi & Takehiko Kobayashi. (2005) Identifying gene-independent noncoding functional elements in the yeast ribosomal DNA by phylogenetic footprinting. Proceedings of the National Academy of Sciences 102:33, pages 11787-11792.
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Agnès H. Michel, Benoît Kornmann, Karine Dubrana & David Shore. (2005) Spontaneous rDNA copy number variation modulates Sir2 levels and epigenetic gene silencing. Genes & Development 19:10, pages 1199-1210.
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R. Prusty & R. L. Keil. (2004) SCH9, a putative protein kinase from Saccharomyces cerevisiae, affects HOT1 -stimulated recombination. Molecular Genetics and Genomics 272:3, pages 264-274.
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Naomi Serizawa, Takashi Horiuchi & Takehiko Kobayashi. (2004) Transcription-mediated hyper-recombination in HOT1. Genes to Cells 9:4, pages 305-315.
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Lucio Comai. 2004. Proteins in Eukaryotic Transcription. Proteins in Eukaryotic Transcription 123 155 .
Julie Huang & Danesh Moazed. (2003) Association of the RENT complex with nontranscribed and coding regions of rDNA and a regional requirement for the replication fork block protein Fob1 in rDNA silencing. Genes & Development 17:17, pages 2162-2176.
Crossref
Francesco Cioci, Loan Vu, Kristilyn Eliason, Melanie Oakes, Imran N. Siddiqi & Masayasu Nomura. (2003) Silencing in Yeast rDNA Chromatin. Molecular Cell 12:1, pages 135-145.
Crossref
Yasushi Takeuchi, Takashi Horiuchi & Takehiko Kobayashi. (2003) Transcription-dependent recombination and the role of fork collision in yeast rDNA. Genes & Development 17:12, pages 1497-1506.
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Tao Weitao, Martin Budd, Laura L. Mays Hoopes & Judith L. Campbell. (2003) Dna2 Helicase/Nuclease Causes Replicative Fork Stalling and Double-strand Breaks in the Ribosomal DNA of Saccharomyces cerevisiae. Journal of Biological Chemistry 278:25, pages 22513-22522.
Crossref
Katsuki Johzuka & Takashi Horiuchi. (2002) Replication fork block protein, Fob1, acts as an rDNA region specific recombinator in S. cerevisiae . Genes to Cells 7:2, pages 99-113.
Crossref
. (2001) Current Awareness. Yeast 18:15, pages 1449-1456.
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