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Molecular and Cellular Biology Volume 26, 2006 - Issue 3
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Article

Study of Long-Distance Functional Interactions between Su(Hw) Insulators That Can Regulate Enhancer-Promoter Communication in Drosophila melanogaster

Ekaterina Savitskaya1 Department of the Control of Genetic Processes, Institute of Gene Biology, Russian Academy of Sciences, Moscow119334, Russia;2 Biomedical Center of Oslo University, Moscow119334, Russia
,
Larisa Melnikova1 Department of the Control of Genetic Processes, Institute of Gene Biology, Russian Academy of Sciences, Moscow119334, Russia
,
Margarita Kostuchenko1 Department of the Control of Genetic Processes, Institute of Gene Biology, Russian Academy of Sciences, Moscow119334, Russia
,
Elena Kravchenko1 Department of the Control of Genetic Processes, Institute of Gene Biology, Russian Academy of Sciences, Moscow119334, Russia
,
Ekaterina Pomerantseva1 Department of the Control of Genetic Processes, Institute of Gene Biology, Russian Academy of Sciences, Moscow119334, Russia
,
Tatiana Boikova1 Department of the Control of Genetic Processes, Institute of Gene Biology, Russian Academy of Sciences, Moscow119334, Russia
,
Darya Chetverina1 Department of the Control of Genetic Processes, Institute of Gene Biology, Russian Academy of Sciences, Moscow119334, Russia
,
Aleksander Parshikov1 Department of the Control of Genetic Processes, Institute of Gene Biology, Russian Academy of Sciences, Moscow119334, Russia
,
Polyna Zobacheva1 Department of the Control of Genetic Processes, Institute of Gene Biology, Russian Academy of Sciences, Moscow119334, Russia
,
Elena Gracheva1 Department of the Control of Genetic Processes, Institute of Gene Biology, Russian Academy of Sciences, Moscow119334, Russia
,
Alexander Galkin3 Institute of Agricultural Biotechnology, Moscow127550, Russia
&
Pavel Georgiev1 Department of the Control of Genetic Processes, Institute of Gene Biology, Russian Academy of Sciences, Moscow119334, RussiaCorrespondence[email protected]
 show all
Pages 754-761 | Received 17 Jun 2005, Accepted 03 Nov 2005, Published online: 27 Mar 2023

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Oksana Maksimenko, Anton Golovnin & Pavel Georgiev. (2008) Enhancer-Promoter Communication Is Regulated by Insulator Pairing in a Drosophila Model Bigenic Locus. Molecular and Cellular Biology 28:17, pages 5469-5477.
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Timothy J. Parnell, Emily J. Kuhn, Brian L. Gilmore, Cecilia Helou, Marc S. Wold & Pamela K. Geyer. (2006) Identification of Genomic Sites That Bind the Drosophila Suppressor of Hairy-wing Insulator Protein. Molecular and Cellular Biology 26:16, pages 5983-5993.
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Olga Kyrchanova, Vladimir Sokolov & Pavel Georgiev. (2023) Mechanisms of Interaction between Enhancers and Promoters in Three Drosophila Model Systems. International Journal of Molecular Sciences 24:3, pages 2855.
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Olga V. Kyrchanova, Oleg V. Bylino & Pavel G. Georgiev. (2022) Mechanisms of enhancer-promoter communication and chromosomal architecture in mammals and Drosophila. Frontiers in Genetics 13.
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Yuki Matsushima, Naoaki Sakamoto & Akinori Awazu. (2019) Insulator Activities of Nucleosome-Excluding DNA Sequences without Bound Chromatin Looping Proteins. The Journal of Physical Chemistry B 123:5, pages 1035-1043.
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Lifang Huang, Peijiang Liu, Zhanjiang Yuan, Tianshou Zhou & Jianshe Yu. (2017) The free-energy cost of interaction between DNA loops. Scientific Reports 7:1.
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L. S. Melnikova, M. V. Kostyuchenko, A. K. Golovnin & P. G. Georgiev. (2017) Mapping of the regulatory sequence within the yellow gene enhancers of D. melanogaster, required for the long-distance enhancer–promoter interaction. Russian Journal of Genetics 53:4, pages 433-444.
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Rhiannon M. David & Ann T. Doherty. (2017) Viral Vectors: The Road to Reducing Genotoxicity. Toxicological Sciences 155:2, pages 315-325.
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Tuoqi Liu, Jiajun Zhang & Tianshou Zhou. (2016) Effect of Interaction between Chromatin Loops on Cell-to-Cell Variability in Gene Expression. PLOS Computational Biology 12:5, pages e1004917.
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M. M. Erokhin, A. I. Davydova, D. V. Lomaev, P. G. Georgiev & D. A. Chetverina. (2016) The effect of transcription on enhancer activity in Drosophila melanogaster. Russian Journal of Genetics 52:1, pages 29-37.
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P. V. Elizar’ev, D. A. Chetverina, A. K. Golovnin, P. G. Georgiev & M. M. Erokhin. (2015) The role of Su(Hw) protein in transcription regulation in Drosophila melanogaster. Russian Journal of Genetics 51:11, pages 1060-1068.
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Boryana Doyle, Geoffrey Fudenberg, Maxim Imakaev & Leonid A. Mirny. (2014) Chromatin Loops as Allosteric Modulators of Enhancer-Promoter Interactions. PLoS Computational Biology 10:10, pages e1003867.
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Olga Kyrchanova & Pavel Georgiev. (2014) Chromatin insulators and long-distance interactions in Drosophila . FEBS Letters 588:1, pages 8-14.
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Maksim Erokhin, Anna Davydova, Alexander Parshikov, Vasily M Studitsky, Pavel Georgiev & Darya Chetverina. (2013) Transcription through enhancers suppresses their activity in Drosophila. Epigenetics & Chromatin 6:1.
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Ram P. Kumar, Jaya Krishnan, Narendra Pratap Singh, Lalji Singh & Rakesh K. Mishra. (2013) GATA simple sequence repeats function as enhancer blocker boundaries. Nature Communications 4:1.
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D. A. Chetverina, P. V. Elizaryev, P. G. Georgiev & M. M. Erokhin. (2013) 1A2 Insulator can interact with promoter of hsp70 gene in D. melanogaster. Russian Journal of Genetics 49:4, pages 371-379.
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Maria Tiana, Diego Villar, Eva Pérez-Guijarro, Laura Gómez-Maldonado, Eduardo Moltó, Ana Fernández-Miñán, Jose Luis Gómez-Skarmeta, Lluís Montoliu & Luis del Peso. (2012) A role for insulator elements in the regulation of gene expression response to hypoxia. Nucleic Acids Research 40:5, pages 1916-1927.
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Swagatam MukhopadhyayPaul SchedlVasily M. Studitsky & Anirvan M. Sengupta. (2011) Theoretical analysis of the role of chromatin interactions in long-range action of enhancers and insulators. Proceedings of the National Academy of Sciences 108:50, pages 19919-19924.
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Maksim ErokhinAnna DavydovaOlga KyrchanovaAlexander ParshikovPavel GeorgievDarya Chetverina. (2011) Insulators form gene loops by interacting with promoters in Drosophila . Development 138:18, pages 4097-4106.
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A. I. Davydova, M. M. Erokhin, P. G. Georgiev & D. A. Chetverina. (2011) Distant interactions between enhancers and promoters in Drosophila melanogaster are mediated by transgene-flanking Su(Hw) insulators. Russian Journal of Genetics 47:8, pages 917-922.
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David W. Emery. (2011) The Use of Chromatin Insulators to Improve the Expression and Safety of Integrating Gene Transfer Vectors. Human Gene Therapy 22:6, pages 761-774.
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Giacomo Cavalli. (2011) From Linear Genes to Epigenetic Inheritance of Three-dimensional Epigenomes. Journal of Molecular Biology 409:1, pages 54-61.
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B. Yu, X.T. Wang, H.W. Li, C.J. Zhao, C.X. Wu & X.M. Deng. (2011) Structural analysis of a 4414-bp element in Drosophila melanogaster. Genetics and Molecular Research 10:2, pages 717-730.
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Naoko Tokuda, Masaki Sasai & George Chikenji. (2011) Roles of DNA Looping in Enhancer-Blocking Activity. Biophysical Journal 100:1, pages 126-134.
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Michèle Amouyal. (2010) Gene insulation. Part I: natural strategies in yeast and Drosophila . Biochemistry and Cell Biology 88:6, pages 875-884.
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Alexey A. Gavrilov, Inna S. Zukher, Elena S. Philonenko, Sergey V. Razin & Olga V. Iarovaia. (2010) Mapping of the nuclear matrix-bound chromatin hubs by a new M3C experimental procedure. Nucleic Acids Research 38:22, pages 8051-8060.
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Ram Parikshan Kumar, Ramamoorthy Senthilkumar, Vipin Singh & Rakesh K Mishra. (2010) Repeat performance: how do genome packaging and regulation depend on simple sequence repeats?. BioEssays 32:2, pages 165-174.
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Chang Long Li, Ding Xiong, George Stamatoyannopoulos & David W Emery. (2009) Genomic and Functional Assays Demonstrate Reduced Gammaretroviral Vector Genotoxicity Associated With Use of the cHS4 Chromatin Insulator. Molecular Therapy 17:4, pages 716-724.
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M. V. Kostyuchenko, E. E. Savitskaya, M. N. Krivega & P. G. Georgiev. (2008) Several copies of insulator from MDG4 can determine the interaction between positively and negatively acting regulatory elements and promoter of the miniwhite gene of Drosophila melanogaster. Russian Journal of Genetics 44:12, pages 1468-1471.
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M. V. Kostyuchenko, E. E. Savitskaya, I. A. Volkov, A. K. Golovnin & P. G. Georgiev. (2008) Study of functional interaction between three copies of the insulator from the MDG4 transposable element in the model system of the miniwhite gene of Drosophila melanogaster. Doklady Biochemistry and Biophysics 421:1, pages 239-243.
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Darya Chetverina, Ekaterina Savitskaya, Oksana Maksimenko, Larisa Melnikova, Olga Zaytseva, Alexander Parshikov, Alexander V. Galkin & Pavel Georgiev. (2008) Red flag on the white reporter: a versatile insulator abuts the white gene in Drosophila and is omnipresent in mini-white constructs. Nucleic Acids Research 36:3, pages 929-937.
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Sergey Rodin, Olga Kyrchanova, Ekaterina Pomerantseva, Alexander Parshikov & Pavel Georgiev. (2007) New Properties of Drosophila Fab-7 Insulator. Genetics 177:1, pages 113-121.
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Itys Comet, Ekaterina Savitskaya, Bernd Schuettengruber, Nicolas Nègre, Sergey Lavrov, Aleksander Parshikov, François Juge, Elena Gracheva, Pavel Georgiev & Giacomo Cavalli. (2006) PRE-Mediated Bypass of Two Su(Hw) Insulators Targets PcG Proteins to a Downstream Promoter. Developmental Cell 11:1, pages 117-124.
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