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Priyanka Barman, Rwik Sen, Amala Kaja, Jannatul Ferdoush, Shalini Guha, Chhabi K. Govind & Sukesh R. Bhaumik. (2022) Genome-Wide Regulations of the Preinitiation Complex Formation and Elongating RNA Polymerase II by an E3 Ubiquitin Ligase, San1. Molecular and Cellular Biology 42:1.
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Jannatul Ferdoush, Rwik Sen, Geetha Durairaj, Priyanka Barman, Amala Kaja, Shalini Guha & Sukesh R. Bhaumik. (2020) An F-Box Protein, Mdm30, Interacts with TREX Subunit Sub2 To Regulate Cellular Abundance Cotranscriptionally in Orchestrating mRNA Export Independently of Splicing and Mitochondrial Function. Molecular and Cellular Biology 40:7.
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Rwik Sen, Priyanka Barman, Amala Kaja, Jannatul Ferdoush, Shweta Lahudkar, Arpan Roy & Sukesh R. Bhaumik. (2019) Distinct Functions of the Cap-Binding Complex in Stimulation of Nuclear mRNA Export. Molecular and Cellular Biology 39:8.
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Bhawana Uprety, Amala Kaja & Sukesh R. Bhaumik. (2018) TOR Facilitates the Targeting of the 19S Proteasome Subcomplex To Enhance Transcription Complex Assembly at the Promoters of the Ribosomal Protein Genes. Molecular and Cellular Biology 38:14.
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Rwik Sen, Amala Kaja, Jannatul Ferdoush, Shweta Lahudkar, Priyanka Barman & Sukesh R. Bhaumik. (2017) An mRNA Capping Enzyme Targets FACT to the Active Gene To Enhance the Engagement of RNA Polymerase II into Transcriptional Elongation. Molecular and Cellular Biology 37:13.
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Rwik Sen, Jannatul Ferdoush, Amala Kaja & Sukesh R. Bhaumik. (2016) Fine-Tuning of FACT by the Ubiquitin Proteasome System in Regulation of Transcriptional Elongation. Molecular and Cellular Biology 36:11, pages 1691-1703.
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Bhawana Uprety, Amala Kaja, Jannatul Ferdoush, Rwik Sen & Sukesh R. Bhaumik. (2016) Regulation of Antisense Transcription by NuA4 Histone Acetyltransferase and Other Chromatin Regulatory Factors. Molecular and Cellular Biology 36:6, pages 992-1006.
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Bhawana Uprety, Rwik Sen & Sukesh R. Bhaumik. (2015) Eaf1p Is Required for Recruitment of NuA4 in Targeting TFIID to the Promoters of the Ribosomal Protein Genes for Transcriptional Initiation In Vivo. Molecular and Cellular Biology 35:17, pages 2947-2964.
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Rwik Sen & Sukesh R Bhaumik. (2013) Transcriptional stimulatory and repressive functions of histone H2B ubiquitin ligase. Transcription 4:5, pages 221-226.
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Shivani Malik, Geetha Durairaj & Sukesh R. Bhaumik. (2013) Mechanisms of Antisense Transcription Initiation from the 3′ End of the GAL10 Coding Sequence In Vivo. Molecular and Cellular Biology 33:18, pages 3549-3567.
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Mahesh B. Chandrasekharan, Fu Huang, Yi-Chun Chen & Zu-Wen Sun. (2010) Histone H2B C-Terminal Helix Mediates trans-Histone H3K4 Methylation Independent of H2B Ubiquitination. Molecular and Cellular Biology 30:13, pages 3216-3232.
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Christian J. Wippo, Bojana Silic Krstulovic, Franziska Ertel, Sanja Musladin, Dorothea Blaschke, Sabrina Stürzl, Guo-Cheng Yuan, Wolfram Hörz, Philipp Korber & Slobodan Barbaric. (2009) Differential Cofactor Requirements for Histone Eviction from Two Nucleosomes at the Yeast PHO84 Promoter Are Determined by Intrinsic Nucleosome Stability. Molecular and Cellular Biology 29:11, pages 2960-2981.
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Bryan J. Venters & B. Franklin Pugh. (2009) How eukaryotic genes are transcribed. Critical Reviews in Biochemistry and Molecular Biology 44:2-3, pages 117-141.
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Articles from other publishers (61)
Priyanka Barman, Amala Kaja, Pritam Chakraborty, Shalini Guha, Arpan Roy, Jannatul Ferdoush & Sukesh R Bhaumik. (2023) A novel ubiquitin–proteasome system regulation of Sgf73/ataxin-7 that maintains the integrity of the coactivator SAGA in orchestrating transcription. GENETICS 224:3.
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Weixiang Wang, Xuan Cai & Xiao-Lin Chen. (2022) Recent Progress of Deubiquitinating Enzymes in Human and Plant Pathogenic Fungi. Biomolecules 12:10, pages 1424.
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Qi Geng, Huan Li, Dan Wang, Ruo-Cheng Sheng, He Zhu, Steven J. Klosterman, Krishna V. Subbarao, Jie-Yin Chen, Feng-Mao Chen & Dan-Dan Zhang. (2022) The Verticillium dahliae Spt-Ada-Gcn5 Acetyltransferase Complex Subunit Ada1 Is Essential for Conidia and Microsclerotia Production and Contributes to Virulence. Frontiers in Microbiology 13.
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Sukesh R. Bhaumik. (2021) Fluorescence resonance energy transfer in revealing protein–protein interactions in living cells. Emerging Topics in Life Sciences 5:1, pages 49-59.
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Jie Yang, Dongjie Chen, Khalid Abdelkarim Omer Matar, Tianhong Zheng, Qianqian Zhao, Yuman Xie, Xiuqin Gao, Mingyang Li, Baohua Wang & Guo-dong Lu. (2020) The deubiquitinating enzyme MoUbp8 is required for infection-related development, pathogenicity, and carbon catabolite repression in Magnaporthe oryzae. Applied Microbiology and Biotechnology 104:11, pages 5081-5094.
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Ryan M. Hull, Michelle King, Grazia Pizza, Felix Krueger, Xabier Vergara & Jonathan Houseley. (2019) Transcription-induced formation of extrachromosomal DNA during yeast ageing. PLOS Biology 17:12, pages e3000471.
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Brandon T. Pfannenstiel & Nancy P. Keller. (2019) On top of biosynthetic gene clusters: How epigenetic machinery influences secondary metabolism in fungi. Biotechnology Advances 37:6, pages 107345.
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Priyanka Barman, Divya Reddy & Sukesh Bhaumik. (2019) Mechanisms of Antisense Transcription Initiation with Implications in Gene Expression, Genomic Integrity and Disease Pathogenesis. Non-Coding RNA 5:1, pages 11.
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Jannatul Ferdoush, Rwik Sen, Amala Kaja, Priyanka Barman & Sukesh R Bhaumik. (2018) Two Distinct Regulatory Mechanisms of Transcriptional Initiation in Response to Nutrient Signaling. Genetics 208:1, pages 191-205.
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Rwik Sen, Shivani Malik, Sarah Frankland-Searby, Bhawana Uprety, Shweta Lahudkar & Sukesh R. Bhaumik. (2014) Rrd1p, an RNA polymerase II-specific prolyl isomerase and activator of phosphoprotein phosphatase, promotes transcription independently of rapamycin response. Nucleic Acids Research 42:15, pages 9892-9907.
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Geetha Durairaj, Rwik Sen, Bhawana Uprety, Abhijit Shukla & Sukesh R. Bhaumik. (2014) Sus1p Facilitates Pre-Initiation Complex Formation at the SAGA-Regulated Genes Independently of Histone H2B De-Ubiquitylation. Journal of Molecular Biology 426:16, pages 2928-2941.
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Geetha Durairaj, Shweta Lahudkar & Sukesh R. Bhaumik. (2014) A new regulatory pathway of mRNA export by an F-box protein, Mdm30. RNA 20:2, pages 133-142.
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Rwik Sen, Shweta Lahudkar, Geetha Durairaj & Sukesh R. Bhaumik. (2013) Functional Analysis of Bre1p, an E3 Ligase for Histone H2B Ubiquitylation, in Regulation of RNA Polymerase II Association with Active Genes and Transcription in Vivo. Journal of Biological Chemistry 288:14, pages 9619-9633.
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Priyasri Chaurasia, Rwik Sen & Sukesh R. Bhaumik. (2013) Functional Analysis of Rad14p, a DNA Damage Recognition Factor in Nucleotide Excision Repair, in Regulation of Transcription in Vivo. Journal of Biological Chemistry 288:2, pages 793-806.
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Abhijit Shukla, Pratibha Bajwa & Sukesh R. Bhaumik. (2006) SAGA-associated Sgf73p facilitates formation of the preinitiation complex assembly at the promoters either in a HAT-dependent or independent manner in vivo. Nucleic Acids Research 34:21, pages 6225-6232.
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Abhijit Shukla, Nadia Stanojevic, Zhen Duan, Thomas Shadle & Sukesh R. Bhaumik. (2006) Functional Analysis of H2B-Lys-123 Ubiquitination in Regulation of H3-Lys-4 Methylation and Recruitment of RNA Polymerase II at the Coding Sequences of Several Active Genes in Vivo. Journal of Biological Chemistry 281:28, pages 19045-19054.
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