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Journal of the American Statistical Association Volume 99, 2004 - Issue 466
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Primary Article

A Bayesian Insertion/Deletion Algorithm for Distant Protein Motif Searching via Entropy Filtering

Jun Xie Jun Xie is Assistant Professor, Department of Statistics, Purdue University, West Lafayette, IN 47907-2067 . Ker-Chau Li is Professor, Department of Statistics, University of California, Los Angeles, CA 90095-1554 . Minou Bina is Professor, Department of Chemistry, Purdue University, West Lafayette, IN 47907-2084. The authors thank the Editor, the Associate Editor, and the anonymous referees for their very helpful comments and suggestions that helped enhance the results. The research of Li was supported by NSF grants DMS-98-03459, DMS-01-04038,and DMS-02-01005.
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Ker-Chau Li Jun Xie is Assistant Professor, Department of Statistics, Purdue University, West Lafayette, IN 47907-2067 . Ker-Chau Li is Professor, Department of Statistics, University of California, Los Angeles, CA 90095-1554 . Minou Bina is Professor, Department of Chemistry, Purdue University, West Lafayette, IN 47907-2084. The authors thank the Editor, the Associate Editor, and the anonymous referees for their very helpful comments and suggestions that helped enhance the results. The research of Li was supported by NSF grants DMS-98-03459, DMS-01-04038,and DMS-02-01005.
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Minou Bina Jun Xie is Assistant Professor, Department of Statistics, Purdue University, West Lafayette, IN 47907-2067 . Ker-Chau Li is Professor, Department of Statistics, University of California, Los Angeles, CA 90095-1554 . Minou Bina is Professor, Department of Chemistry, Purdue University, West Lafayette, IN 47907-2084. The authors thank the Editor, the Associate Editor, and the anonymous referees for their very helpful comments and suggestions that helped enhance the results. The research of Li was supported by NSF grants DMS-98-03459, DMS-01-04038,and DMS-02-01005.
Pages 409-420 | Published online: 31 Dec 2011

Citations (8)

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Junfeng Liu, Liang Chen, Hongyu Zhao, Dirk F Moore, Yong Lin & Weichung Joe Shih. (2009) On calculating the probability of a set of orthologous sequences. Advances and Applications in Bioinformatics and Chemistry 2, pages 37-48.
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Articles from other publishers (7)

Thanh Le, Tom Altman & Katheleen Gardiner. (2010) HIGEDA: a hierarchical gene-set genetics based algorithm for finding subtle motifs in biological sequences. Bioinformatics 26:3, pages 302-309.
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Nak-Kyeong KimJun Xie. (2006) Protein Multiple Alignment Incorporating Primary and Secondary Structure Information. Journal of Computational Biology 13:10, pages 1735-1748.
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Nak-Kyeong KimJun Xie. (2006) Protein Multiple Alignment Incorporating Primary and Secondary Structure Information. Journal of Computational Biology 13:9, pages 1615-1629.
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D. Liu, X. Xiong, B. Dasgupta & H. Zhang. (2006) Motif Discoveries in Unaligned Molecular Sequences Using Self-Organizing Neural Networks. IEEE Transactions on Neural Networks 17:4, pages 919-928.
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Jun XieNak-Kyeong Kim. (2005) Bayesian Models and Markov Chain Monte Carlo Methods for Protein Motifs with the Secondary Characteristics. Journal of Computational Biology 12:7, pages 952-970.
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Derong Liu, Xiaoxu Xiong, Zeng-Guang Hou & Bhaskar DasGupta. (2005) Identification of motifs with insertions and deletions in protein sequences using self-organizing neural networks. Neural Networks 18:5-6, pages 835-842.
Crossref
Xiaoxu Xiong, Derong Liu & Huaguang Zhang. (2005) A self-organizing neural network approach for the identification of motifs with insertions and deletions in protein sequences. A self-organizing neural network approach for the identification of motifs with insertions and deletions in protein sequences.

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