Advanced search
Publication Cover
Journal of Computational and Graphical Statistics Volume 14, 2005 - Issue 2
Submit an article Journal homepage
333
Views
52
CrossRef citations to date
0
Altmetric
Primary Article

Classification Using Generalized Partial Least Squares

Beiying Ding Beiying Ding is Senior Biostatistician, Medical Affairs Biostatistics, Amgen Inc., One Amgen Center Drive,Mail Stop 24-2-A, Thousand Oaks, CA 91320 . Robert Gentleman is Head, Program in Computational Biology, Division of Public Health Sciences M2-B865, Fred Hutchinson Cancer Research Center .
&
Robert Gentleman Beiying Ding is Senior Biostatistician, Medical Affairs Biostatistics, Amgen Inc., One Amgen Center Drive,Mail Stop 24-2-A, Thousand Oaks, CA 91320 . Robert Gentleman is Head, Program in Computational Biology, Division of Public Health Sciences M2-B865, Fred Hutchinson Cancer Research Center .
Pages 280-298 | Published online: 01 Jan 2012

Citations (52)

Keep up to date with the latest research on this topic with citation updates for this article.

Subscribe to citation updates

Read on this site (2)

Saeid Janizadeh, Sayed M. Bateni, Changhyun Jun, Jungho Im, Hao-Thing Pai, Shahab S. Band & Amir Mosavi. (2023) Combination four different ensemble algorithms with the generalized linear model (GLM) for predicting forest fire susceptibility. Geomatics, Natural Hazards and Risk 14:1.
Read now
Chuan-Quan Li, You-Wu Lin & Qing-Song Xu. (2021) An enhanced random forest with canonical partial least squares for classification. Communications in Statistics - Theory and Methods 50:18, pages 4324-4334.
Read now

Articles from other publishers (50)

S. Park, E. Ceulemans & K. Van Deun. (2023) Logistic regression with sparse common and distinctive covariates. Behavior Research Methods 55:8, pages 4143-4174.
Crossref
Shengsheng Qian, Dizhan Xue, Quan Fang & Changsheng Xu. (2022) Adaptive Label-Aware Graph Convolutional Networks for Cross-Modal Retrieval. IEEE Transactions on Multimedia 24, pages 3520-3532.
Crossref
Stefano Fornasaro, Claudia Beleites, Valter Sergo & Alois Bonifacio. 2022. SERS for Point-Of-care and Clinical Applications. SERS for Point-Of-care and Clinical Applications 1 51 .
Matteo Stocchero, Martino De Nardi & Bruno Scarpa. (2021) PLS for classification. Chemometrics and Intelligent Laboratory Systems 216, pages 104374.
Crossref
Jérémy Magnanensi, Myriam Maumy-Bertrand, Nicolas Meyer & Frédéric Bertrand. (2021) New Developments in Sparse PLS Regression. Frontiers in Applied Mathematics and Statistics 7.
Crossref
Sandra Ramírez, Manuel Zarzo & Fernando-Juan García-Diego. (2021) Multivariate Time Series Analysis of Temperatures in the Archaeological Museum of L’Almoina (Valencia, Spain). Sensors 21:13, pages 4377.
Crossref
José Luis Izquierdo-Garcia, Patricia Comella-del-Barrio, Ramón Campos-Olivas, Raquel Villar-Hernández, Cristina Prat-Aymerich, Maria Luiza De Souza-Galvão, Maria Angeles Jiménez-Fuentes, Juan Ruiz-Manzano, Zoran Stojanovic, Adela González, Mar Serra-Vidal, Esther García-García, Beatriz Muriel-Moreno, Joan Pau Millet, Israel Molina-Pinargote, Xavier Casas, Javier Santiago, Fina Sabriá, Carmen Martos, Christian Herzmann, Jesús Ruiz-Cabello & José Domínguez. (2020) Discovery and validation of an NMR-based metabolomic profile in urine as TB biomarker. Scientific Reports 10:1.
Crossref
Uli Niemann, Petra Brueggemann, Benjamin Boecking, Birgit Mazurek & Myra Spiliopoulou. (2020) Development and internal validation of a depression severity prediction model for tinnitus patients based on questionnaire responses and socio-demographics. Scientific Reports 10:1.
Crossref
Guangyu Zhu & Zhihua Su. (2020) Envelope-based sparse partial least squares. The Annals of Statistics 48:1.
Crossref
Uli Niemann, Benjamin Boecking, Petra Brueggemann, Wilhelm Mebus, Birgit Mazurek & Myra Spiliopoulou. (2020) Tinnitus-related distress after multimodal treatment can be characterized using a key subset of baseline variables. PLOS ONE 15:1, pages e0228037.
Crossref
Nicola Tambasco, Federico Paolini Paoletti, Andrea Chiappiniello, Viviana Lisetti, Pasquale Nigro, Paolo Eusebi, Pietro Chiarini, Michele Romoli, Elona Brahimi, Simone Simoni, Marta Filidei, Piero Floridi, Roberto Tarducci, Lucilla Parnetti & Paolo Calabresi. (2019) T2*-weighted MRI values correlate with motor and cognitive dysfunction in Parkinson's disease. Neurobiology of Aging 80, pages 91-98.
Crossref
Jose L. Izquierdo-Garcia, Nicolas Nin, Jorge Jimenez-Clemente, Juan P. Horcajada, Maria del Mar Arenas-Miras, Joaquim Gea, Andres Esteban, Jesus Ruiz-Cabello & Jose A. Lorente. (2018) Metabolomic Profile of ARDS by Nuclear Magnetic Resonance Spectroscopy in Patients With H1N1 Influenza Virus Pneumonia. Shock 50:5, pages 504-510.
Crossref
María Callejo, Gema Mondejar-Parreño, Bianca Barreira, José L. Izquierdo-Garcia, Daniel Morales-Cano, Sergio Esquivel-Ruiz, Laura Moreno, Ángel Cogolludo, Juan Duarte & Francisco Perez-Vizcaino. (2018) Pulmonary Arterial Hypertension Affects the Rat Gut Microbiome. Scientific Reports 8:1.
Crossref
Uli Niemann, Philipp Berg, Annika Niemann, Oliver Beuing, Bernhard Preim, Myra Spiliopoulou & Sylvia Saalfeld. (2018) Rupture Status Classification of Intracranial Aneurysms Using Morphological Parameters. Rupture Status Classification of Intracranial Aneurysms Using Morphological Parameters.
Ghislain Durif, Laurent Modolo, Jakob Michaelsson, Jeff E Mold, Sophie Lambert-Lacroix & Franck Picard. (2018) High dimensional classification with combined adaptive sparse PLS and logistic regression. Bioinformatics 34:3, pages 485-493.
Crossref
D. Mera, M. Fernández-Delgado, J. M. Cotos, J. R. R. Viqueira & S. Barro. (2016) Comparison of a massive and diverse collection of ensembles and other classifiers for oil spill detection in SAR satellite images. Neural Computing and Applications 28:S1, pages 1101-1117.
Crossref
I.M. Kulikovskikh. (2017) Cognitive validation map for early occupancy detection in environmental sensing. Engineering Applications of Artificial Intelligence 65, pages 330-335.
Crossref
Jérémy Magnanensi, Frédéric Bertrand, Myriam Maumy-Bertrand & Nicolas Meyer. (2016) A new universal resample-stable bootstrap-based stopping criterion for PLS component construction. Statistics and Computing 27:3, pages 757-774.
Crossref
Xiao Dong, En Yu, Min Gao, Lei Zhu, Jiande Sun & Huaxiang Zhang. (2017) Semi-supervised Distance Consistent Cross-modal Retrieval. Semi-supervised Distance Consistent Cross-modal Retrieval.
Ilona Kulikovskikh & Sergej Prokhorov. (2017) Minimizing the effects of floor and ceiling to improve the convergence of log-likelihood. Procedia Engineering 201, pages 779-788.
Crossref
Annette Möller, Gerhard Tutz & Jan Gertheiss. (2016) Random forests for functional covariates. Journal of Chemometrics 30:12, pages 715-725.
Crossref
Yanzhu Lin, Min Zhang & Dabao Zhang. (2015) Generalized orthogonal components regression for high dimensional generalized linear models. Computational Statistics & Data Analysis 88, pages 119-127.
Crossref
Philip T. Reiss, Lan Huo, Yihong Zhao, Clare Kelly & R. Todd Ogden. (2015) Wavelet-domain regression and predictive inference in psychiatric neuroimaging. The Annals of Applied Statistics 9:2.
Crossref
Liang Tang, Silong Peng, Yiming Bi, Peng Shan & Xiyuan Hu. (2014) A New Method Combining LDA and PLS for Dimension Reduction. PLoS ONE 9:5, pages e96944.
Crossref
Liu Jianwei, Sun Zhengkang & Luo Xionglin. (2014) Non-integer norm regularized logistic regression. Non-integer norm regularized logistic regression.
Jan Kalina. (2014) Classification methods for high-dimensional genetic data. Biocybernetics and Biomedical Engineering 34:1, pages 10-18.
Crossref
Kean Ming Tan, Ashley Petersen & Daniela Witten. 2014. Statistical Analysis of Next Generation Sequencing Data. Statistical Analysis of Next Generation Sequencing Data 219 246 .
Francis G. Bowling & Mervyn Thomas. 2014. Clinical Bioinformatics. Clinical Bioinformatics 31 45 .
Miaomiao Jiang, Chunhua Wang, Yu Zhang, Yifan Feng, Yuefei Wang & Yan Zhu. (2013) Sparse Partial‐least‐squares Discriminant Analysis for Different Geographical Origins of Salvia miltiorrhiza by 1 H‐NMR‐based Metabolomics . Phytochemical Analysis 25:1, pages 50-58.
Crossref
Wentian Li & Yaning Yang. 2013. Biological Knowledge Discovery Handbook. Biological Knowledge Discovery Handbook 477 500 .
Jose L. Marroquin, Omar Mendoza-Montoya, Rolando J. Biscay, Salvador Ruiz-Correa, Thalia Harmony & Thalia Fernandez. (2013) A maximum linear separation criterion for the analysis of neurophysiological data. Journal of Neuroscience Methods 214:2, pages 233-245.
Crossref
Abdallah Bari, Kenneth Street, Michael Mackay, Dag Terje Filip Endresen, Eddy De Pauw & Ahmed Amri. (2011) Focused identification of germplasm strategy (FIGS) detects wheat stem rust resistance linked to environmental variables. Genetic Resources and Crop Evolution 59:7, pages 1465-1481.
Crossref
Gillian M. Scott, Sharon S. W. Chow, Maria E. Craig, Chi N. I. Pang, Beverley Hall, Marc R. Wilkins, Cheryl A. Jones, Andrew R. Lloyd & William D. Rawlinson. (2012) Cytomegalovirus Infection During Pregnancy With Maternofetal Transmission Induces a Proinflammatory Cytokine Bias in Placenta and Amniotic Fluid. The Journal of Infectious Diseases 205:8, pages 1305-1310.
Crossref
Kim-Anh Lê Cao, Simon Boitard & Philippe Besse. (2011) Sparse PLS discriminant analysis: biologically relevant feature selection and graphical displays for multiclass problems. BMC Bioinformatics 12:1.
Crossref
José L. Izquierdo-García, Nicolás Nin, Jesús Ruíz-Cabello, Yeny Rojas, Marta de Paula, Sonia López-Cuenca, Luis Morales, Leticia Martínez-Caro, Pilar Fernández-Segoviano, Andrés Esteban & José A. Lorente. (2011) A metabolomic approach for diagnosis of experimental sepsis. Intensive Care Medicine 37:12, pages 2023-2032.
Crossref
Jose L. Izquierdo-García, Palmira Villa, Angelos Kyriazis, Laura del Puerto-Nevado, Sandra Pérez-Rial, Ignacio Rodriguez, Natalia Hernandez & Jesús Ruiz-Cabello. (2011) Descriptive review of current NMR-based metabolomic data analysis packages. Progress in Nuclear Magnetic Resonance Spectroscopy 59:3, pages 263-270.
Crossref
Dayle L. Sampson, Tony J. Parker, Zee Upton & Cameron P. Hurst. (2011) A Comparison of Methods for Classifying Clinical Samples Based on Proteomics Data: A Case Study for Statistical and Machine Learning Approaches. PLoS ONE 6:9, pages e24973.
Crossref
D. Lomiwes, M.M. Reis, E. Wiklund, O.A. Young & M. North. (2010) Near infrared spectroscopy as an on-line method to quantitatively determine glycogen and predict ultimate pH in pre rigor bovine M. longissimus dorsi. Meat Science 86:4, pages 999-1004.
Crossref
Jose L. Izquierdo-García, Laura del Puerto-Nevado, Germán Peces-Barba, Sandra Pérez-Rial, Sarah Heili, Palmira Villa, David Castejón, Nicolás González-Mangado & Jesús Ruiz-Cabello. (2010) A metabonomic approach to evaluate COPD in a model of cigarette smoke exposure in mice. Metabolomics 6:4, pages 564-573.
Crossref
Jose L Izquierdo-García, Ignacio Rodríguez, Angelos Kyriazis, Palmira Villa, Pilar Barreiro, Manuel Desco & Jesús Ruiz-Cabello. (2009) A novel R-package graphic user interface for the analysis of metabonomic profiles. BMC Bioinformatics 10:1.
Crossref
Hansheng Wang & Chih‐Ling Tsai. (2009) ‘Model selection for generalized linear models with factor‐augmented predictors’. Applied Stochastic Models in Business and Industry 25:3, pages 241-242.
Crossref
Elena S. F. Berman, Ligang Wu, Susan L. Fortson, Kristen S. Kulp, David O. Nelson & Kuang Jen Wu. (2009) Chemometric and statistical analyses of ToF-SIMS spectra of increasingly complex biological samples. Surface and Interface Analysis 41:2, pages 97-104.
Crossref
E.M. Færgestad, Ø. Langsrud, M. Høy, K. Hollung, S. Sæbø, K.H. Liland, A. Kohler, L. Gidskehaug, J. Almergren, E. Anderssen & H. Martens. 2009. Comprehensive Chemometrics. Comprehensive Chemometrics 221 278 .
I. Parveen, J.M. Moorby, W.M. Hirst, S.M. Morris & M.D. Fraser. (2008) Profiling of plasma and faeces by FT-IR to differentiate between heathland plant diets offered to zero-grazed sheep. Animal Feed Science and Technology 144:1-2, pages 65-81.
Crossref
A.-L. BoulesteixC. StroblT. AugustinM. Daumer. (2008) Evaluating Microarray-based Classifiers: An Overview. Cancer Informatics 6, pages CIN.S408.
Crossref
V Detours, L Delys, F Libert, D Weiss Solís, T Bogdanova, J E Dumont, B Franc, G Thomas & C Maenhaut. (2007) Genome-wide gene expression profiling suggests distinct radiation susceptibilities in sporadic and post-Chernobyl papillary thyroid cancers. British Journal of Cancer 97:6, pages 818-825.
Crossref
Chunming Zhang, Haoda Fu, Yuan Jiang & Tao Yu. (2007) High-dimensional pseudo-logistic regression and classification with applications to gene expression data. Computational Statistics & Data Analysis 52:1, pages 452-470.
Crossref
Jiajun Liu, Jacqueline M. Hughes-Oliver & J. Alan MeniusJrJr. (2007) Domain-enhanced analysis of microarray data using GO annotations. Bioinformatics 23:10, pages 1225-1234.
Crossref
Sophie Lambert-Lacroix & Julie Peyre. (2006) Local likelihood regression in generalized linear single-index models with applications to microarray data. Computational Statistics & Data Analysis 51:3, pages 2091-2113.
Crossref
Andrzej Endler. (2014) Application of Binary Classifiers to Filter Transactions on the Financial Market. SSRN Electronic Journal.
Crossref

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Order Reprints Request Corporate Permissions

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

Request Academic Permissions

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.