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Bioscience, Biotechnology, and Biochemistry Volume 71, 2007 - Issue 1
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Original Articles

Molecular Cloning, Expression, and Characterization of a β-Agarase Gene, agaD, from a Marine Bacterium, Vibrio sp. Strain PO-303

Jinhua DONGGraduate School of Bioresources, Mie University
,
Yutaka TAMARUGraduate School of Bioresources, Mie University
&
Toshiyoshi ARAKIGraduate School of Bioresources, Mie University
Pages 38-46 | Received 31 May 2006, Accepted 18 Sep 2006, Published online: 22 May 2014

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Jie Long, Ziying Ye, Xingfei Li, Yaoqi Tian, Yuxiang Bai, Long Chen, Chao Qiu, Zhengjun Xie, Zhengyu Jin & Birte Svensson. (2022) Enzymatic preparation and potential applications of agar oligosaccharides: a review. Critical Reviews in Food Science and Nutrition 0:0, pages 1-17.
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Zui FUJIMOTO. (2013) Structure and Function of Carbohydrate-Binding Module Families 13 and 42 of Glycoside Hydrolases, Comprising a β-Trefoil Fold. Bioscience, Biotechnology, and Biochemistry 77:7, pages 1363-1371.
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Articles from other publishers (31)

Mengyuan Zhang, Jianxin Wang, Runying Zeng, Dingquan Wang, Wenxin Wang, Xiufang Tong & Wu Qu. (2022) Agarose-Degrading Characteristics of a Deep-Sea Bacterium Vibrio Natriegens WPAGA4 and Its Cold-Adapted GH50 Agarase Aga3420. Marine Drugs 20:11, pages 692.
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Chengcheng Jiang, Tianyu Zhang, Yuxian Xu & Xiangzhao Mao. (2022) Characterization of a GH50 β-Agarase: A Biotechnological Tool for Preparing Oligosaccharides from Agarose and Porphyran. Journal of Agricultural and Food Chemistry 70:32, pages 9931-9940.
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Yanjun Qiu, Hong Jiang, Linlan Fu, Fangfang Ci & Xiangzhao Mao. (2021) Porphyran and oligo-porphyran originating from red algae Porphyra: Preparation, biological activities, and potential applications. Food Chemistry 349, pages 129209.
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Dingquan Wang, Jianxin Wang, Runying Zeng, Jie Wu, Shija V. Michael & Wu Qu. (2021) The degradation activities for three seaweed polysaccharides of Shewanella sp. WPAGA9 isolated from deep‐sea sediments . Journal of Basic Microbiology 61:5, pages 406-418.
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Zhen-Xing Xu, Pei Yu, Qi-Yun Liang, Da-Shuai Mu & Zong-Jun Du. (2020) Inducible expression of agar-degrading genes in a marine bacterium Catenovulum maritimus Q1T and characterization of a β-agarase. Applied Microbiology and Biotechnology 104:24, pages 10541-10553.
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Pallaval Veera Bramhachari, G. Mohana Sheela & A.M.V.N. Prathyusha. 2020. Encyclopedia of Marine Biotechnology. Encyclopedia of Marine Biotechnology 2021 2038 .
Junwen Ma, Qiaojuan Yan, Ping Yi, Shaoqing Yang, Haijie Liu & Zhengqiang Jiang. (2019) Biochemical characterization of a truncated β-agarase from Microbulbifer sp. suitable for efficient production of neoagarotetraose. Process Biochemistry 87, pages 119-127.
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Zeng-Weng Chen, Hui-Jie Lin, Wen-Cheng Huang, Shih-Ling Hsuan, Jiunn-Horng Lin & Jyh-Perng Wang. (2018) Molecular cloning, expression, and functional characterization of the β-agarase AgaB-4 from Paenibacillus agarexedens. AMB Express 8:1.
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Ren-Kuan Li, Zeng Chen, Xi-Juan Ying, Tzi Bun Ng & Xiu-Yun Ye. (2018) A novel GH16 beta-agarase isolated from a marine bacterium, Microbulbifer sp. BN3 and its characterization and high-level expression in Pichia pastoris. International Journal of Biological Macromolecules 119, pages 1164-1170.
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Xiaohua Zhang, Heyu Lin, Xiaolei Wang & Brian Austin. (2018) Significance of Vibrio species in the marine organic carbon cycle—A review. Science China Earth Sciences 61:10, pages 1357-1368.
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Ke An, Xiaochong Shi, Fangyuan Cui, Jingguang Cheng, Na Liu, Xia Zhao & Xiao-Hua Zhang. (2018) Characterization and overexpression of a glycosyl hydrolase family 16 beta-agarase YM01-1 from marine bacterium Catenovulum agarivorans YM01 T. Protein Expression and Purification 143, pages 1-8.
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Yi-Rui Wu, Zheng-Rong Zhou, Min Zhao, Bokun Lin, Mingqi Zhong & Zhong Hu. (2017) Molecular characterization of the thermostability and carbohydrate-binding module from a newly identified GH118 family agarase, AgaXa. Process Biochemistry 52, pages 192-199.
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Se Won Kim, Chae-Hwan Hong, Na Kyong Yun & Hyun-Jae Shin. (2016) Production and Application of Recombinant Agarase. Journal of Marine Bioscience and Biotechnology 8:1, pages 1-9.
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Wenjun Han, Jingyan Gu, Huihui Liu, Fuchuan Li, Zhihong Wu & Yuezhong Li. (2015) Deletion of a non-catalytic region increases the enzymatic activity of a β-agarase from Flammeovirga sp. MY04. Journal of Ocean University of China 14:5, pages 841-848.
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Fangyuan Cui, Sujie Dong, Xiaochong Shi, Xia Zhao & Xiao-Hua Zhang. (2014) Overexpression and Characterization of a Novel Thermostable β-Agarase YM01-3, from Marine Bacterium Catenovulum agarivorans YM01T. Marine Drugs 12:5, pages 2731-2747.
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S.-S. Liang, Y.-P. Chen, Y.-H. Chen, S.-H. Chiu & L.-L. Liaw. (2014) Characterization and overexpression of a novel β -agarase from Thalassomonas agarivorans . Journal of Applied Microbiology 116:3, pages 563-572.
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Young Bin Seo, Yan Lu, Won-Jae Chi, Hye Rin Park, Ki Jun Jeong, Soon-Kwang Hong & Yong Keun Chang. (2014) Heterologous expression of a newly screened β-agarase from Alteromonas sp. GNUM1 in Escherichia coli and its application for agarose degradation. Process Biochemistry 49:3, pages 430-436.
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Myong Je Jeon, A-Ram Kim, Dong-Geun Lee & Sang-Hyeon Lee. (2012) Cloning, Expression, and Characterization of a Novel GH-16 β-Agarase from Agarivorans sp. JA-1. Journal of Life Science 22:11, pages 1545-1551.
Crossref
Wenjun Han, Jingyan Gu, Qiujie Yan, Jungang Li, Zhihong Wu, Qianqun Gu & Yuezhong Li. (2012) A polysaccharide-degrading marine bacterium Flammeovirga sp. MY04 and its extracellular agarase system. Journal of Ocean University of China 11:3, pages 375-382.
Crossref
Won-Jae Chi, Yong-Keun Chang & Soon-Kwang Hong. (2012) Agar degradation by microorganisms and agar-degrading enzymes. Applied Microbiology and Biotechnology 94:4, pages 917-930.
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Dong-Geun Lee & Sang-Hyeon Lee. (2012) The Classification, Origin, Collection, Determination of Activity, Purification, Production, and Application of Agarases. Journal of Life Science 22:2, pages 266-280.
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Osamu Ariga, Naoki Okamoto, Takayoshi Inoue, Hajime Kubo & Hironori Moriyama. (2012) [Review: Symposium on Amylases and Related Enzymes] Isolation of Agarolytic Enzyme and Functionality of Agarooligosaccharide. Bulletin of Applied Glycoscience 2:2, pages 142-146.
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Li Liao, Xue-Wei Xu, Xia-Wei Jiang, Yi Cao, Na Yi, Ying-Yi Huo, Yue-Hong Wu, Xu-Fen Zhu, Xin-qi Zhang & Min Wu. (2011) Cloning, Expression, and Characterization of a New β-Agarase from Vibrio sp. Strain CN41 . Applied and Environmental Microbiology 77:19, pages 7077-7079.
Crossref
Jing-Iong Yang, Lei-Chin Chen, Yuan-Yuan Shih, Chienyan Hsieh, Chien-Yen Chen, Wen-Ming Chen & Chien-Cheng Chen. (2011) Cloning and characterization of β-agarase AgaYT from Flammeovirga yaeyamensis strain YT. Journal of Bioscience and Bioengineering 112:3, pages 225-232.
Crossref
Ravichand Jonnadula & Sanjeev C. Ghadi. (2011) Purification and characterization of β-agarase from seaweed decomposing bacterium Microbulbifer sp. Strain CMC-5. Biotechnology and Bioprocess Engineering 16:3, pages 513-519.
Crossref
Min Hye Shin, Do Yup Lee, Gert Wohlgemuth, In-Geol Choi, Oliver Fiehn & Kyoung Heon Kim. (2010) Global metabolite profiling of agarose degradation by Saccharophagus degradans 2-40. New Biotechnology 27:2, pages 156-168.
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Xiao Ting Fu & Sang Moo Kim. (2010) Agarase: Review of Major Sources, Categories, Purification Method, Enzyme Characteristics and Applications. Marine Drugs 8:1, pages 200-218.
Crossref
Xinzhi Lu, Yan Chu, Qianqian Wu, Yuchao Gu, Feng Han & Wengong Yu. (2009) Cloning, expression and characterization of a new agarase-encoding gene from marine Pseudoalteromonas sp.. Biotechnology Letters 31:10, pages 1565-1570.
Crossref
Z. Hu, B.-K. Lin, Y. Xu, M.Q. Zhong & G.-M. Liu. (2009) Production and purification of agarase from a marine agarolytic bacterium Agarivorans sp. HZ105 . Journal of Applied Microbiology 106:1, pages 181-190.
Crossref
Yan-Ling Shi, Xin-Zhi Lu & Wen-Gong Yu. (2008) A new β-agarase from marine bacterium Janthinobacterium sp. SY12. World Journal of Microbiology and Biotechnology 24:11, pages 2659-2664.
Crossref
Wei-wei Zhang & Li Sun. (2007) Cloning, Characterization, and Molecular Application of a Beta-Agarase Gene from Vibrio sp. Strain V134 . Applied and Environmental Microbiology 73:9, pages 2825-2831.
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