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Bioscience, Biotechnology, and Biochemistry Volume 67, 2003 - Issue 7
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Original Articles

Development of an Effective Sample Preparation Method for the Proteome Analysis of Body Fluids Using 2-D Gel Electrophoresis

Won-A JOOGraduate School of Life Sciences and Biotechnology, Korea UniversitySeoul 136-701, Korea
,
Do-Youn LEEGraduate School of Life Sciences and Biotechnology, Korea UniversitySeoul 136-701, Korea
&
Chan-Wha KIMGraduate School of Life Sciences and Biotechnology, Korea UniversitySeoul 136-701, Korea
Pages 1574-1577 | Received 18 Nov 2002, Accepted 25 Mar 2003, Published online: 22 May 2014

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Lucie Vojtová, Tomáš Zima, Vladimír Tesař, Jana Michalová, Petr Přikryl, Gabriela Dostálová & Aleš Linhart. (2010) Study of urinary proteomes in Anderson-Fabry disease. Renal Failure 32:10, pages 1202-1209.
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Ji-Soo KIM, Hyun-Kyung LEE, Mi-Ryung KIM, Pan-Kyeom KIM & Chan-Wha KIM. (2008) Differentially Expressed Proteins of Mesenchymal Stem Cells Derived from Human Cord Blood (hUCB) during Osteogenic Differentiation. Bioscience, Biotechnology, and Biochemistry 72:9, pages 2309-2317.
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Do-Youn LEE, Sang-Soo LEE, Won-A JOO, Eun-Ju LEE & Chan-Wha KIM. (2004) Analysis of Differentially Regulated Proteins in TM4 Cells Treated with Bisphenol A. Bioscience, Biotechnology, and Biochemistry 68:6, pages 1201-1208.
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Righetti Pier Giorgio & Boschetti Egisto. (2023) Pillaging plucking plundering ransacking proteomes via CPLL technology. Open Journal of Proteomics and Genomics 8:1, pages 001-010.
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Bahareh Sedaghat, Homa Hajjaran, Fatemeh Sadat Sadjjadi, Soudabeh Heidari & Seyed Mahmoud Sadjjadi. (2021) Proteomic characterization of hydatid cyst fluid: two-dimensional electrophoresis (2-DE) setup through optimizing protein extraction. BMC Research Notes 14:1.
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Mikel Azkargorta, Javier Soria, Arantxa Acera, Ibon Iloro & Felix Elortza. (2017) Human tear proteomics and peptidomics in ophthalmology: Toward the translation of proteomic biomarkers into clinical practice. Journal of Proteomics 150, pages 359-367.
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Fabian Stiefel, Albert Jesuran Paul, Troisi Jacopo, Angelo Sgueglia, Martina St?tzle, Eva Maria Herold & Friedemann Hesse. (2015) The influence of bisphenol A on mammalian cell cultivation. Applied Microbiology and Biotechnology 100:1, pages 113-124.
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Xueping Ling, Jing Guo, Chuqiang Zheng, Chiming Ye, Yinghua Lu, Xueshan Pan, Zhengqi Chen & I-Son Ng. (2015) Simple, effective protein extraction method and proteomics analysis from polyunsaturated fatty acids-producing micro-organisms. Bioprocess and Biosystems Engineering 38:12, pages 2331-2341.
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Q. Zhang, C.F. McGuigan, K. Lew & X. Chris Le. 2012. Comprehensive Sampling and Sample Preparation. Comprehensive Sampling and Sample Preparation 123 142 .
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Vesela Encheva & Robert Parker. 2010. Mass Spectrometry for Microbial Proteomics. Mass Spectrometry for Microbial Proteomics 117 142 .
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Annalisa Castagna, Daniela Cecconi, Egisto Boschetti & Pier Giorgio Righetti. 2009. Renal and Urinary Proteomics. Renal and Urinary Proteomics 201 217 .
Farid E. Ahmed. (2009) Sample preparation and fractionation for proteome analysis and cancer biomarker discovery by mass spectrometry. Journal of Separation Science 32:5-6, pages 771-798.
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Seung-Ah Park, Mi-Ryung Kim, Pan-Kyeom Kim, Hyung-Don Cho, Gi-Yeon Han & Chan-Wha Kim. (2008) Sample preparation method for plasma membrane proteome analysis. Journal of Chromatography B 872:1-2, pages 177-180.
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Hyun‐Jung Kim, Hyun‐Syuk Yoo & Chan‐Wha Kim. (2008) Proteomics in diabetic nephropathy. PROTEOMICS – Clinical Applications 2:3, pages 301-311.
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Dae Hoon JeongHyoung Kyu KimAbd-EI Bary PrinceDae Sim LeeYoung Nam KimJin HanKi Tae Kim. (2008) Plasma proteomic analysis of patients with squamous cell carcinoma of the uterine cervix. Journal of Gynecologic Oncology 19:3, pages 173.
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George A. Riding, Alun Jones, Michael K. Holland, Jonathan R. Hill & Sigrid A. Lehnert. (2007) Proteomic analysis of bovine conceptus fluids during early pregnancy. PROTEOMICS 8:1, pages 160-177.
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Mi Jang, Byoung Chul Park, Ah Young Lee, Kyeong Sook Na, Sunghyun Kang, Kwang-Hee Bae, Pyung Keun Myung, Bong Chul Chung, Sayeon Cho, Do Hee Lee & Sung Goo Park. (2007) Caspase-7 mediated cleavage of proteasome subunits during apoptosis. Biochemical and Biophysical Research Communications 363:2, pages 388-394.
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Kaili Wu & Yanli Zhang. (2007) Clinical application of tear proteomics: Present and future prospects. PROTEOMICS – Clinical Applications 1:9, pages 972-982.
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Franz H. Grus, Stephanie C. Joachim & Norbert Pfeiffer. (2007) Proteomics in ocular fluids. PROTEOMICS – Clinical Applications 1:8, pages 876-888.
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Visith Thongboonkerd. (2007) Recent progress in urinary proteomics. PROTEOMICS – Clinical Applications 1:8, pages 780-791.
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Hyun-Jung Kim, Mi-Ryung Kim, Eun-Jung So & Chan-Wha Kim. (2007) Comparison of proteomes in various human plasma preparations by two-dimensional gel electrophoresis. Journal of Biochemical and Biophysical Methods 70:4, pages 619-625.
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Mi-Ryung Kim & Chan-Wha Kim. (2007) Human blood plasma preparation for two-dimensional gel electrophoresis. Journal of Chromatography B 849:1-2, pages 203-210.
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Anna Bodzon-Kulakowska, Anna Bierczynska-Krzysik, Tomasz Dylag, Anna Drabik, Piotr Suder, Marek Noga, Justyna Jarzebinska & Jerzy Silberring. (2007) Methods for samples preparation in proteomic research. Journal of Chromatography B 849:1-2, pages 1-31.
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Eun-Hee Cho, Mi-Ryung Kim, Hyun-Jung Kim, Do-Yeon Lee, Pan-Kyeom Kim, Kyung Mook Choi, Ohk-Hyun Ryu & Chan-Wha Kim. (2007) The discovery of biomarkers for type 2 diabetic nephropathy by serum proteome analysis. PROTEOMICS – Clinical Applications 1:4, pages 352-361.
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Lu Zhou, ZhaoHui Lu, AiMing Yang, RuiXue Deng, CanRong Mai, XinTing Sang, Klaas Nico Faber & XingHua Lu. (2007) Comparative proteomic analysis of human pancreatic juice: Methodological study. PROTEOMICS 7:8, pages 1345-1355.
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Bryan M. Ham, Jean T. Jacob & Richard B. Cole. (2007) Single eye analysis and contralateral eye comparison of tear proteins in normal and dry eye model rabbits by MALDI-ToF mass spectrometry using wax-coated target plates. Analytical and Bioanalytical Chemistry 387:3, pages 889-900.
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Panagiotis G. Zerefos, Konstantinos Vougas, Ploumisti Dimitraki, Sophia Kossida, Andreas Petrolekas, Konstantinos Stravodimos, Aris Giannopoulos, Michael Fountoulakis & Antonia Vlahou. (2006) Characterization of the human urine proteome by preparative electrophoresis in combination with 2-DE. PROTEOMICS 6:15, pages 4346-4355.
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Pier Giorgio Righetti, Egisto Boschetti, Lee Lomas & Attilio Citterio. (2006) Protein Equalizer™ Technology : The quest for a “democratic proteome”. PROTEOMICS 6:14, pages 3980-3992.
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Chang-Won Cho & Chan-Wha Kim. (2006) Toxicoproteomics in the study of aromatic hydrocarbon toxicity. Biotechnology and Bioprocess Engineering 11:3, pages 187-198.
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Mi-Ra Park, Eun-Hui Wang, Dong-Chan Jin, Jung-Ho Cha, Kweon-Heang Lee, Chul-Woo Yang, Chang-Suk Kang & Yeong-Jin Choi. (2006) Establishment of a 2-D human urinary proteomic map in IgA nephropathy. PROTEOMICS 6:3, pages 1066-1076.
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Hee-Soon ImHyung-Doo KimJie-Young SongYoungsoo HanDo-Youn LeeChan-Wha KimYeon-Sook Yun. (2006) Overexpression of α1-protease Inhibitor and Galectin-1 in Radiation-induced Early Phase of Pulmonary Fibrosis. Cancer Research and Treatment 38:2, pages 92.
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Tetsuya Fujimoto, Makiko Miya, Maiko Machida, Shigeru Takechi, Shigeo Kakinoki, Koichi Kanda & Akikazu Nomura. (2006) Improved Recovery of Human Urinary Protein for Electrophoresis. Journal of Health Science 52:6, pages 718-723.
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R. Crameri. (2005) The potential of proteomics and peptidomics for allergy and asthma research. Allergy 60:10, pages 1227-1237.
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Dagmar Fuchs, Isabel Winkelmann, Ian T. Johnson, Edwin Mariman, Uwe Wenzel & Hannelore Daniel. (2007) Proteomics in nutrition research: principles, technologies and applications. British Journal of Nutrition 94:3, pages 302-314.
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Jun-Seop Shin, Jae-Jeong Lee, Eun-Ju Lee, Yeon-Hee Kim, Kwon-Seok Chae & Chan-Wha Kim. (2005) Proteome analysis of rat pancreas induced by pancreatectomy. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 1749:1, pages 23-32.
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Andrew Hopkinson, Richard S. McIntosh, Robert Layfield, John Keyte, Harminder S. Dua & Paddy J. Tighe. (2005) Optimised two-dimensional electrophoresis procedures for the protein characterisation of structural tissues. PROTEOMICS 5:7, pages 1967-1979.
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Stacy H. Shoshan & Arie Admon. 2005. 159 184 .
Hyun‐Ju Lee, Do‐Youn Lee, Won‐A Joo, Donggeun Sul, Eunil Lee & Chan‐Wha Kim. (2004) Differential expression of proteins in rat plasma exposed to benzene. PROTEOMICS 4:11, pages 3498-3504.
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Noh Kap‐Soon, Lee Do‐Youn, Cha Jung Hak, Won‐A Joo, Eunil Lee & Kim Chan‐Wha. (2004) Protein biomarkers in the plasma of workers occupationally exposed to polycyclic aromatic hydrocarbons. PROTEOMICS 4:11, pages 3505-3513.
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Won-A Joo, Donggeun Sul, Do-Youn Lee, Eunil Lee & Chan-Wha Kim. (2004) Proteomic analysis of plasma proteins of workers exposed to benzene. Mutation Research/Genetic Toxicology and Environmental Mutagenesis 558:1-2, pages 35-44.
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Won-A Joo, Mee-Jeong Kang, Won-kyu Son, Hyun-Ju Lee, Do-Youn Lee, Eunil Lee & Chan-Wha Kim. (2003) Monitoring protein expression by proteomics: Human plasma exposed to benzene. PROTEOMICS 3:12, pages 2402-2411.
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