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Kinetic proofreading of gene activation by chromatin remodeling

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Pages 167-170 | Received 26 Mar 2008, Published online: 07 Sep 2010

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Hinrich Boeger. (2022) Kinetic Proofreading. Annual Review of Biochemistry 91:1, pages 423-447.
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Aaron Morgan, Sarah LeGresley & Christopher Fischer. (2020) Remodeler Catalyzed Nucleosome Repositioning: Influence of Structure and Stability. International Journal of Molecular Sciences 22:1, pages 76.
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Amaris Torres-Delgado, Hema Chandra Kotamarthi, Robert T. Sauer & Tania A. Baker. (2020) The Intrinsically Disordered N-terminal Extension of the ClpS Adaptor Reprograms Its Partner AAA + ClpAP Protease. Journal of Molecular Biology 432:17, pages 4908-4921.
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Helmut Schiessel & Ralf Blossey. (2020) Pioneer transcription factors in chromatin remodeling: The kinetic proofreading view. Physical Review E 101:4.
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Ciriyam Jayaprakash & Jayajit Das. (2019) Stochastic Sequestration Promotes Specificity in Decision Making in Single Cells. The Journal of Physical Chemistry B 123:49, pages 10323-10330.
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Ralf Blossey & Helmut Schiessel. (2019) Histone mark recognition controls nucleosome translocation via a kinetic proofreading mechanism: Confronting theory and high-throughput experiments. Physical Review E 99:6.
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Giovanni B. Brandani & Shoji Takada. (2018) Chromatin remodelers couple inchworm motion with twist-defect formation to slide nucleosomal DNA. PLOS Computational Biology 14:11, pages e1006512.
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Ralf Blossey & Helmut Schiessel. (2018) The Latest Twists in Chromatin Remodeling. Biophysical Journal 114:10, pages 2255-2261.
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Guillaume Brysbaert, Marc F Lensink & Ralf Blossey. (2015) Regulatory motifs on ISWI chromatin remodelers: molecular mechanisms and kinetic proofreading. Journal of Physics: Condensed Matter 27:6, pages 064108.
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Yuri M. Moshkin. (2015) Chromatin—a global buffer for eukaryotic gene control. AIMS Biophysics 2:4, pages 531-554.
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Raghvendra P Singh, Guillaume Brysbaert, Marc F Lensink, Fabrizio Cleri & Ralf Blossey. (2015) Kinetic proofreading of chromatin remodeling: from gene activation to gene repression and back. AIMS Biophysics 2:4, pages 398-411.
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Tobias Ahsendorf, Felix Wong, Roland Eils & Jeremy Gunawardena. (2014) A framework for modelling gene regulation which accommodates non-equilibrium mechanisms. BMC Biology 12:1.
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Geeta J. Narlikar, Ramasubramanian Sundaramoorthy & Tom Owen-Hughes. (2013) Mechanisms and Functions of ATP-Dependent Chromatin-Remodeling Enzymes. Cell 154:3, pages 490-503.
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Jaya Yodh. 2013. DNA Helicases and DNA Motor Proteins. DNA Helicases and DNA Motor Proteins 263 295 .
Ana-Maria Florescu, Helmut Schiessel & Ralf Blossey. (2012) Kinetic Control of Nucleosome Displacement by ISWI/ACF Chromatin Remodelers. Physical Review Letters 109:11.
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Yves Vandecan & Ralf Blossey. (2012) Stochastic description of single nucleosome repositioning by ACF remodelers. Physical Review E 85:6.
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Sucheta Gokhale, Dimpal Nyayanit & Chetan Gadgil. (2011) A systems view of the protein expression process. Systems and Synthetic Biology 5:3-4, pages 139-150.
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Ralf Blossey & Helmut Schiessel. (2011) The dynamics of the nucleosome: thermal effects, external forces and ATP. FEBS Journal 278:19, pages 3619-3632.
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Fabian Erdel, Jana Krug, Gernot Längst & Karsten Rippe. (2011) Targeting chromatin remodelers: Signals and search mechanisms. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1809:9, pages 497-508.
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Ralf Blossey & Helmut Schiessel. (2011) Kinetic Proofreading in Chromatin Remodeling: The Case of ISWI/ACF. Biophysical Journal 101:4, pages L30-L32.
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Geeta J Narlikar. (2010) A proposal for kinetic proof reading by ISWI family chromatin remodeling motors. Current Opinion in Chemical Biology 14:5, pages 660-665.
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Hailiang Huang, Alexandra M. Maertens, Edel M. Hyland, Junbiao Dai, Anne Norris, Jef D. Boeke & Joel S. Bader. (2009) HistoneHits: A database for histone mutations and their phenotypes. Genome Research 19:4, pages 674-681.
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