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Critical Reviews in Clinical Laboratory Sciences Volume 53, 2016 - Issue 5
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Hepatitis C virus whole genome sequencing: Current methods/issues and future challenges

Pauline TrémeauxLaboratoire de Virologie, Institut de Biologie et Pathologie, CHU Grenoble-Alpes, Grenoble, France, ;Institut de Biologie Structurale (IBS), UMR 5075 CEA-CNRS-UGA, Grenoble, France,
,
Alban CaporossiCentre d’investigation clinique, Santé publique, CHU Grenoble-Alpes, Grenoble, France, ;Laboratoire TIMC-IMAG, Université de Grenoble Alpes, Grenoble, France, and
,
Marie-Ange ThéluClinique d’Hépato-gastroentérologie, Pôle Digidune, CHU Grenoble-Alpes, Grenoble, France
,
Michael BlumLaboratoire TIMC-IMAG, Université de Grenoble Alpes, Grenoble, France, and
,
Vincent LeroyClinique d’Hépato-gastroentérologie, Pôle Digidune, CHU Grenoble-Alpes, Grenoble, France
,
Patrice MorandLaboratoire de Virologie, Institut de Biologie et Pathologie, CHU Grenoble-Alpes, Grenoble, France, ;Institut de Biologie Structurale (IBS), UMR 5075 CEA-CNRS-UGA, Grenoble, France,
&
Sylvie LarratLaboratoire de Virologie, Institut de Biologie et Pathologie, CHU Grenoble-Alpes, Grenoble, France, ;Institut de Biologie Structurale (IBS), UMR 5075 CEA-CNRS-UGA, Grenoble, France, Correspondence[email protected]
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Pages 341-351 | Received 16 Sep 2015, Accepted 06 Mar 2016, Published online: 12 Apr 2016

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Shiva Akhtarian, Saba Miri, Ali Doostmohammadi, Satinder Kaur Brar & Pouya Rezai. (2021) Nanopore sensors for viral particle quantification: current progress and future prospects. Bioengineered 12:2, pages 9189-9215.
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Lize Cuypers, Marijn Thijssen, Arash Shakibzadeh, Farzaneh Sabahi, Mehrdad Ravanshad & Mahmoud Reza Pourkarim. (2019) Next-generation sequencing for the clinical management of hepatitis C virus infections: does one test fits all purposes?. Critical Reviews in Clinical Laboratory Sciences 56:6, pages 420-434.
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Isabella Esposito, Julieta Trinks & Vicente Soriano. (2016) Hepatitis C virus resistance to the new direct-acting antivirals. Expert Opinion on Drug Metabolism & Toxicology 12:10, pages 1197-1209.
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Articles from other publishers (8)

Nicholas A. Meanwell. (2023) Sub-stoichiometric Modulation of Viral Targets─Potent Antiviral Agents That Exploit Target Vulnerability. ACS Medicinal Chemistry Letters 14:8, pages 1021-1030.
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Natália Spitz, José J. Barros, Kycia M. do Ó, Carlos E. Brandão-Mello & Natalia M. Araujo. (2019) The First Complete Genome Sequences of Hepatitis C Virus Subtype 2b from Latin America: Molecular Characterization and Phylogeographic Analysis. Viruses 11:11, pages 1000.
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Benjamin Linard, Krister Swenson & Fabio Pardi. (2019) Rapid alignment-free phylogenetic identification of metagenomic sequences. Bioinformatics 35:18, pages 3303-3312.
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Andrea D. Olmstead, Vincent Montoya, Celia K. Chui, Winnie Dong, Jeffrey B. Joy, Vera Tai, Art F.Y. Poon, Thuy Nguyen, Chanson J. Brumme, Marianne Martinello, Gail V. Matthews, P. Richard Harrigan, Gregory J. Dore, Tanya L. Applegate, Jason Grebely & Anita Y.M. Howe. (2019) A systematic, deep sequencing-based methodology for identification of mixed-genotype hepatitis C virus infections. Infection, Genetics and Evolution 69, pages 76-84.
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Isabella Esposito, Sebastián Marciano, Leila Haddad, Omar Galdame, Alejandra Franco, Adrián Gadano, Diego Flichman & Julieta Trinks. (2018) Prevalence and Factors Related to Natural Resistance-Associated Substitutions to Direct-Acting Antivirals in Patients with Genotype 1 Hepatitis C Virus Infection. Viruses 11:1, pages 3.
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G. Dirani, E. Paesini, E. Mascetra, P. Farabegoli, B. Dalmo, B. Bartolini, A.R. Garbuglia, M.R. Capobianchi & V. Sambri. (2018) A novel next generation sequencing assay as an alternative to currently available methods for hepatitis C virus genotyping. Journal of Virological Methods 251, pages 88-91.
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Reaz Uddin & Kevin M. Downard. (2017) Subtyping of hepatitis C virus with high resolution mass spectrometry. Clinical Mass Spectrometry 4-5, pages 19-24.
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Mario Poljak. (2016) Commentary: Next-Generation Sequencing: a Diagnostic One-Stop Shop for Hepatitis C?. Journal of Clinical Microbiology 54:10, pages 2427-2430.
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