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Cell Cycle Volume 13, 2014 - Issue 20
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Temporal separation of replication and transcription during S-phase progression

Matthieu Meryet-FiguiereDepartment of Medical Genetics; Institute of Biomedicine; The Sahlgrenska Academy; University of Gothenburg; Gothenburg, Sweden
,
Babak Alaei-MahabadiDepartment of Medical Biochemistry and Cell Biology; Institute of Biomedicine; The Sahlgrenska Academy; University of Gothenburg; Gothenburg, Sweden
,
Mohamad Moustafa AliDepartment of Medical Genetics; Institute of Biomedicine; The Sahlgrenska Academy; University of Gothenburg; Gothenburg, Sweden
,
Sanhita MitraDepartment of Medical Genetics; Institute of Biomedicine; The Sahlgrenska Academy; University of Gothenburg; Gothenburg, Sweden
,
Santhilal SubhashDepartment of Medical Genetics; Institute of Biomedicine; The Sahlgrenska Academy; University of Gothenburg; Gothenburg, Sweden
,
Gaurav Kumar PandeyDepartment of Medical Genetics; Institute of Biomedicine; The Sahlgrenska Academy; University of Gothenburg; Gothenburg, Sweden
,
Erik LarssonDepartment of Medical Biochemistry and Cell Biology; Institute of Biomedicine; The Sahlgrenska Academy; University of Gothenburg; Gothenburg, SwedenCorrespondence[email protected] [email protected]
&
Chandrasekhar KanduriDepartment of Medical Genetics; Institute of Biomedicine; The Sahlgrenska Academy; University of Gothenburg; Gothenburg, SwedenCorrespondence[email protected] [email protected]
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Pages 3241-3248 | Received 16 May 2014, Accepted 07 Aug 2014, Published online: 06 Nov 2014

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Santhilal Subhash, Mohamad Moustafa Ali & Chandrasekhar Kanduri. (2018) S-phase cancer associated lncRNAs. Cell Cycle 17:23, pages 2517-2519.
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Berta Canal, Alba Duch, Francesc Posas & Eulàlia de Nadal. (2018) A novel mechanism for the prevention of transcription replication conflicts. Molecular & Cellular Oncology 5:3.
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Kathleen Kylie, Julia Romero, Indeewari K.S. Lindamulage, James Knockleby & Hoyun Lee. (2016) Dynamic regulation of histone H3K9 is linked to the switch between replication and transcription at the Dbf4 origin-promoter locus. Cell Cycle 15:17, pages 2321-2335.
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Articles from other publishers (31)

Rahul Bhowmick, Ian D. Hickson & Ying Liu. (2023) Completing genome replication outside of S phase. Molecular Cell 83:20, pages 3596-3607.
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Meifeng Zheng, Yingying Lin, Wei Wang, Yu Zhao & Xichen Bao. (2022) Application of nucleoside or nucleotide analogues in RNA dynamics and RNA ‐binding protein analysis . WIREs RNA 13:6.
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Elli-Mari Aska, Bulat Zagidullin, Esa Pitkänen & Liisa Kauppi. (2022) Single-Cell Mononucleotide Microsatellite Analysis Reveals Differential Insertion-Deletion Dynamics in Mouse T Cells. Frontiers in Genetics 13.
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Elena López-Jiménez & Cristina González-Aguilera. (2022) Role of Chromatin Replication in Transcriptional Plasticity, Cell Differentiation and Disease. Genes 13:6, pages 1002.
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Xanita Saayman & Fumiko Esashi. (2021) Breaking the paradigm: early insights from mammalian DNA breakomes . The FEBS Journal 289:9, pages 2409-2428.
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Marco Saponaro. (2022) Transcription–Replication Coordination. Life 12:1, pages 108.
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Verena Hurst, Kiran Challa, Felix Jonas, Romain Forey, Ragna Sack, Jan Seebacher, Christoph D Schmid, Naama Barkai, Kenji Shimada, Susan M Gasser & Jérôme Poli. (2021) A regulatory phosphorylation site on Mec1 controls chromatin occupancy of RNA polymerases during replication stress. The EMBO Journal 40:21.
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Samira Kemiha, Jérôme Poli, Yea-Lih Lin, Armelle Lengronne & Philippe Pasero. (2021) Toxic R-loops: Cause or consequence of replication stress?. DNA Repair 107, pages 103199.
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Commodore St Germain, Hongchang Zhao & Jacqueline H. Barlow. (2021) Transcription-Replication Collisions—A Series of Unfortunate Events. Biomolecules 11:8, pages 1249.
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Maxime Lalonde, Manuel Trauner, Marcel Werner & Stephan Hamperl. (2021) Consequences and Resolution of Transcription–Replication Conflicts. Life 11:7, pages 637.
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Kiwon Park, Jeongmin Ryoo, Heena Jeong, Minsu Kim, Sungwon Lee, Sung-Yeon Hwang, Jiyoung Ahn, Doyeon Kim, Hyungseok C. Moon, Daehyun Baek, Kwangsoo Kim, Hye Yoon Park & Kwangseog Ahn. (2021) Aicardi-Goutières syndrome-associated gene SAMHD1 preserves genome integrity by preventing R-loop formation at transcription–replication conflict regions. PLOS Genetics 17:4, pages e1009523.
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Melvin Noe Gonzalez, Daniel Blears & Jesper Q. Svejstrup. (2020) Causes and consequences of RNA polymerase II stalling during transcript elongation. Nature Reviews Molecular Cell Biology 22:1, pages 3-21.
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Matthieu Meryet-Figuiere, Mohamad Moustafa Ali, Santhilal Subhash & Chandrasekhar Kanduri. 2021. Functional Analysis of Long Non-Coding RNAs. Functional Analysis of Long Non-Coding RNAs 239 249 .
Kathleen Klotz-Noack, Bertram Klinger, Maria Rivera, Natalie Bublitz, Florian Uhlitz, Pamela Riemer, Mareen Lüthen, Thomas Sell, Katharina Kasack, Bastian Gastl, Sylvia S.S. Ispasanie, Tincy Simon, Nicole Janssen, Matthias Schwab, Johannes Zuber, David Horst, Nils Blüthgen, Reinhold Schäfer, Markus Morkel & Christine Sers. (2020) SFPQ Depletion Is Synthetically Lethal with BRAFV600E in Colorectal Cancer Cells. Cell Reports 32:12, pages 108184.
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Georgia R. Kafer & Anthony J. Cesare. (2020) A Survey of Essential Genome Stability Genes Reveals That Replication Stress Mitigation Is Critical for Peri-Implantation Embryogenesis. Frontiers in Cell and Developmental Biology 8.
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Wei Wu, Ian D. Hickson & Ying Liu. (2020) The prevention and resolution of DNA replication–transcription conflicts in eukaryotic cells. Genome Instability & Disease 1:3, pages 114-128.
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Catherine C. Bradley, Alasdair J.E. Gordon, Jennifer A. Halliday & Christophe Herman. (2019) Transcription fidelity: New paradigms in epigenetic inheritance, genome instability and disease. DNA Repair 81, pages 102652.
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Belén Gómez-González & Andrés Aguilera. (2019) Transcription-mediated replication hindrance: a major driver of genome instability. Genes & Development 33:15-16, pages 1008-1026.
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Antonio Jordán-Pla, Maria E. Pérez-Martínez & José E. Pérez-Ortín. (2019) Measuring RNA polymerase activity genome-wide with high-resolution run-on-based methods. Methods 159-160, pages 177-182.
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Dominik Boos & Pedro Ferreira. (2019) Origin Firing Regulations to Control Genome Replication Timing. Genes 10:3, pages 199.
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Erin E. Duffy, Jeremy A. Schofield & Matthew D. Simon. (2018) Gaining insight into transcriptome‐wide RNA population dynamics through the chemistry of 4‐thiouridine. WIREs RNA 10:1.
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Britta A. M. Bouwman & Nicola Crosetto. (2018) Endogenous DNA Double-Strand Breaks during DNA Transactions: Emerging Insights and Methods for Genome-Wide Profiling. Genes 9:12, pages 632.
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Vasileios Voutsinos, Sebastian H. N. Munk & Vibe H. Oestergaard. (2018) Common Chromosomal Fragile Sites—Conserved Failure Stories. Genes 9:12, pages 580.
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Santhilal Subhash, Kankadeb Mishra, Vijay Suresh Akhade, Meena Kanduri, Tanmoy Mondal & Chandrasekhar Kanduri. (2018) H3K4me2 and WDR5 enriched chromatin interacting long non-coding RNAs maintain transcriptionally competent chromatin at divergent transcriptional units. Nucleic Acids Research 46:18, pages 9384-9400.
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Robert Albero, Anna Enjuanes, Santiago Demajo, Giancarlo Castellano, Magda Pinyol, Noelia García, Cristina Capdevila, Guillem Clot, Helena Suárez-Cisneros, Mariko Shimada, Kennosuke Karube, Mónica López-Guerra, Dolors Colomer, Sílvia Beà, José Ignacio Martin-Subero, Elías Campo & Pedro Jares. (2018) Cyclin D1 overexpression induces global transcriptional downregulation in lymphoid neoplasms. Journal of Clinical Investigation 128:9, pages 4132-4147.
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Mohamad Moustafa Ali, Vijay Suresh Akhade, Subazini Thankaswamy Kosalai, Santhilal Subhash, Luisa Statello, Matthieu Meryet-Figuiere, Jonas Abrahamsson, Tanmoy Mondal & Chandrasekhar Kanduri. (2018) PAN-cancer analysis of S-phase enriched lncRNAs identifies oncogenic drivers and biomarkers. Nature Communications 9:1.
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Joakim Karlsson, Thomas Kroneis, Emma Jonasson, Erik Larsson & Anders Ståhlberg. (2017) Transcriptomic Characterization of the Human Cell Cycle in Individual Unsynchronized Cells. Journal of Molecular Biology 429:24, pages 3909-3924.
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Yathish Jagadheesh Achar & Marco Foiani. 2017. DNA Replication. DNA Replication 455 487 .
Stephan Hamperl & Karlene A. Cimprich. (2016) Conflict Resolution in the Genome: How Transcription and Replication Make It Work. Cell 167:6, pages 1455-1467.
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Tatiana García-Muse & Andrés Aguilera. (2016) Transcription–replication conflicts: how they occur and how they are resolved. Nature Reviews Molecular Cell Biology 17:9, pages 553-563.
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Leonardo Andrade-Lima, Artur Veloso & Mats Ljungman. (2015) Transcription Blockage Leads to New Beginnings. Biomolecules 5:3, pages 1600-1617.
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