2,327
Views
47
CrossRef citations to date
0
Altmetric
REVIEW

Modification of the wobble uridine in bacterial and mitochondrial tRNAs reading NNA/NNG triplets of 2-codon boxes

, , , , , , , & show all
Pages 1495-1507 | Received 30 Jun 2014, Accepted 07 Nov 2014, Published online: 26 Feb 2015

Keep up to date with the latest research on this topic with citation updates for this article.

Read on this site (2)

Ismaïl Moukadiri, Magda Villarroya, Alfonso Benítez-Páez & M.-Eugenia Armengod. (2018) Bacillus subtilis exhibits MnmC-like tRNA modification activities. RNA Biology 15:9, pages 1167-1173.
Read now
Raffael Schaffrath & Sebastian A. Leidel. (2017) Wobble uridine modifications–a reason to live, a reason to die?!. RNA Biology 14:9, pages 1209-1222.
Read now

Articles from other publishers (45)

Praneeth Bommisetti & Vahe Bandarian. (2023) Insights into the Mechanism of Installation of 5-Carboxymethylaminomethyl Uridine Hypermodification by tRNA-Modifying Enzymes MnmE and MnmG. Journal of the American Chemical Society.
Crossref
Jaehun Yoo, Jangmin Lee & Jungwook Kim. (2023) Structural basis for the selective methylation of 5-carboxymethoxyuridine in tRNA modification. Nucleic Acids Research.
Crossref
Ornella Bimai, Pierre Legrand, Jean-Luc Ravanat, Nadia Touati, Jingjing Zhou, Nisha He, Marine Lénon, Frédéric Barras, Marc Fontecave & Béatrice Golinelli-Pimpaneau. (2023) The thiolation of uridine 34 in tRNA, which controls protein translation, depends on a [4Fe-4S] cluster in the archaeum Methanococcus maripaludis. Scientific Reports 13:1.
Crossref
B. Nawrot, M. Sierant & P. Szczupak. 2023. Handbook of Chemical Biology of Nucleic Acids. Handbook of Chemical Biology of Nucleic Acids 1231 1264 .
B. Nawrot, M. Sierant & P. Szczupak. 2022. Handbook of Chemical Biology of Nucleic Acids. Handbook of Chemical Biology of Nucleic Acids 1 34 .
Praneeth Bommisetti, Anthony Young & Vahe Bandarian. (2022) Elucidation of the substrate of tRNA-modifying enzymes MnmEG leads to in vitro reconstitution of an evolutionarily conserved uridine hypermodification. Journal of Biological Chemistry 298:11, pages 102548.
Crossref
Yimin Yang, Mi Lin, Xueqiu Chen, XianFeng Zhao, Lulu Chen, Mingxiu Zhao, Chaoqun Yao, Kaiyin Sheng, Yi Yang, Guangxu Ma & Aifang Du. (2022) The first apicoplast tRNA thiouridylase plays a vital role in the growth of Toxoplasma gondii. Frontiers in Cellular and Infection Microbiology 12.
Crossref
María José Garzón, Mariana Reyes-Prieto & Rosario Gil. (2022) The Minimal Translation Machinery: What We Can Learn From Naturally and Experimentally Reduced Genomes. Frontiers in Microbiology 13.
Crossref
Ewan P. Plant & Zhiping Ye. (2022) Bias at the third nucleotide of codon pairs in virus and host genomes. Scientific Reports 12:1.
Crossref
Béatrice Golinelli-Pimpaneau. (2021) Prediction of the Iron–Sulfur Binding Sites in Proteins Using the Highly Accurate Three-Dimensional Models Calculated by AlphaFold and RoseTTAFold. Inorganics 10:1, pages 2.
Crossref
Guan-Wen Chen, Yi-An Chen, Hsin-Yi Chang, Tsui-Chin Huang & Tai-Yuan Chen. (2021) Combined impact of high-pressure processing and slightly acidic electrolysed water on Listeria monocytogenes proteomes. Food Research International 147, pages 110494.
Crossref
Jingjing Zhou, Marine Lénon, Jean-Luc Ravanat, Nadia Touati, Christophe Velours, Karolina Podskoczyj, Grazyna Leszczynska, Marc Fontecave, Frédéric Barras & Béatrice Golinelli-Pimpaneau. (2021) Iron–sulfur biology invades tRNA modification: the case of U34 sulfuration. Nucleic Acids Research 49:7, pages 3997-4007.
Crossref
Antoine Danchin, Agnieszka Sekowska & Conghui You. (2020) One‐carbon metabolism, folate, zinc and translation. Microbial Biotechnology 13:4, pages 899-925.
Crossref
Naoki Shigi, Masaki Horitani, Kenjyo Miyauchi, Tsutomu Suzuki & Misao Kuroki. (2020) An ancient type of MnmA protein is an iron–sulfur cluster-dependent sulfurtransferase for tRNA anticodons. RNA 26:3, pages 240-250.
Crossref
Oksana Koshla, Oleksandr Yushchuk, Iryna Ostash, Yuriy Dacyuk, Maksym Myronovskyi, Gunilla Jäger, Roderich D. Süssmuth, Andriy Luzhetskyy, Anders Byström, Leif A. Kirsebom & Bohdan Ostash. (2019) Gene miaA for post‐transcriptional modification of tRNA XXA is important for morphological and metabolic differentiation in Streptomyces . Molecular Microbiology 112:1, pages 249-265.
Crossref
Danni Chen, Zengming Zhang, Chao Chen, Shihao Yao, Qingxian Yang, Feng Li, Xiao He, Cheng Ai, Meng Wang & Min-Xin Guan. (2019) Deletion of Gtpbp3 in zebrafish revealed the hypertrophic cardiomyopathy manifested by aberrant mitochondrial tRNA metabolism. Nucleic Acids Research 47:10, pages 5341-5355.
Crossref
Christopher Keller, Manas Chattopadhyay & Herbert Tabor. (2019) Absolute requirement for polyamines for growth of Escherichia coli mutants (mnmE/G) defective in modification of the wobble anticodon of transfer-RNA. FEMS Microbiology Letters 366:10.
Crossref
Hiroyuki Hori. (2019) Regulatory Factors for tRNA Modifications in Extreme- Thermophilic Bacterium Thermus thermophilus. Frontiers in Genetics 10.
Crossref
Yuliia Sehin, Oksana Koshla, Yuriy Dacyuk, Ruoxia Zhao, Robert Ross, Maksym Myronovskyi, Patrick A. Limbach, Andriy Luzhetskyy, Suzanne Walker, Victor Fedorenko & Bohdan Ostash. (2019) Gene ssfg_01967 (miaB) for tRNA modification influences morphogenesis and moenomycin biosynthesis in Streptomyces ghanaensis ATCC14672. Microbiology 165:2, pages 233-245.
Crossref
Ya-Ming Hou, Isao Masuda & Howard Gamper. (2019) Codon-Specific Translation by m1G37 Methylation of tRNA. Frontiers in Genetics 9.
Crossref
Navanath M. Kumbhar & Janhavi S. Gopal. (2019) Structural significance of hypermodified nucleoside 5-carboxymethylaminomethyluridine (cmnm5U) from ‘wobble’ (34th) position of mitochondrial tRNAs: Molecular modeling and Markov state model studies. Journal of Molecular Graphics and Modelling 86, pages 66-83.
Crossref
Hiroyuki Hori, Takuya Kawamura, Takako Awai, Anna Ochi, Ryota Yamagami, Chie Tomikawa & Akira Hirata. (2018) Transfer RNA Modification Enzymes from Thermophiles and Their Modified Nucleosides in tRNA. Microorganisms 6:4, pages 110.
Crossref
Huijeong Ryu, Tyler L Grove, Steven C Almo & Jungwook Kim. (2018) Identification of a novel tRNA wobble uridine modifying activity in the biosynthesis of 5-methoxyuridine. Nucleic Acids Research 46:17, pages 9160-9169.
Crossref
Qinghai Zhang, Luwen Zhang, Danni Chen, Xiao He, Shihao Yao, Zengming Zhang, Ye Chen & Min-Xin Guan. (2018) Deletion of Mtu1 (Trmu) in zebrafish revealed the essential role of tRNA modification in mitochondrial biogenesis and hearing function. Nucleic Acids Research.
Crossref
Ryota Yamagami, Ryota Miyake, Ayaka Fukumoto, Misa Nakashima & Hiroyuki Hori. (2018) Consumption of N5, N10-methylenetetrahydrofolate in Thermus thermophilus under nutrient-poor condition. The Journal of Biochemistry 164:2, pages 141-152.
Crossref
Rafael Ruiz-Partida, Silvia Prado, Magda Villarroya, Adrián Velázquez-Campoy, Jerónimo Bravo & M.-Eugenia Armengod. (2018) An Alternative Homodimerization Interface of MnmG Reveals a Conformational Dynamics that Is Essential for Its tRNA Modification Function. Journal of Molecular Biology 430:17, pages 2822-2842.
Crossref
Xiaoyu Pan, Desheng Gong, Duc Ninh Nguyen, Xinxin Zhang, Qi Hu, Hanlin Lu, Merete Fredholm, Per T Sangild & Fei Gao. (2018) Early microbial colonization affects DNA methylation of genes related to intestinal immunity and metabolism in preterm pigs. DNA Research 25:3, pages 287-296.
Crossref
Hannu Myllykallio, Pierre Sournia, Alice Heliou & Ursula Liebl. (2018) Unique Features and Anti-microbial Targeting of Folate- and Flavin-Dependent Methyltransferases Required for Accurate Maintenance of Genetic Information. Frontiers in Microbiology 9.
Crossref
Rachid Boutoual, Salvador Meseguer, Magda Villarroya, Elena Martín-Hernández, Mohammed Errami, Miguel A. Martín, Marta Casado & M.-Eugenia Armengod. (2018) Defects in the mitochondrial-tRNA modification enzymes MTO1 and GTPBP3 promote different metabolic reprogramming through a HIF-PPARγ-UCP2-AMPK axis. Scientific Reports 8:1.
Crossref
Susumu Okamoto & Hiromi Kameya. (2018) Antibacterial Action of Acid Preservatives and Acid Stress Response in Bacteria酸ストレスによる細菌細胞の損傷とその耐性機構. Nippon Shokuhin Kagaku Kogaku Kaishi 65:3, pages 148-153.
Crossref
Salvador Meseguer, Olga Boix, Carmen Navarro-González, Magda Villarroya, Rachid Boutoual, Sonia Emperador, Elena García-Arumí, Julio Montoya & M.-Eugenia Armengod. (2017) microRNA-mediated differential expression of TRMU, GTPBP3 and MTO1 in cell models of mitochondrial-DNA diseases. Scientific Reports 7:1.
Crossref
Joseph Aubee, Morenike Olu & Karl Thompson. (2017) TrmL and TusA Are Necessary for rpoS and MiaA Is Required for hfq Expression in Escherichia coli. Biomolecules 7:4, pages 39.
Crossref
Kristina Nilsson, Gunilla Jäger & Glenn R. Björk. (2017) An unmodified wobble uridine in tRNAs specific for Glutamine, Lysine, and Glutamic acid from Salmonella enterica Serovar Typhimurium results in nonviability—Due to increased missense errors?. PLOS ONE 12:4, pages e0175092.
Crossref
Hiroyuki Hori. (2017) Transfer RNA methyltransferases with a SpoU‐TrmD  (SPOUT) fold and their modified nucleosides in  tRNA. Biomolecules 7:4, pages 23.
Crossref
Feilong Meng, Xiaohui Cang, Yanyan Peng, Ronghua Li, Zhengyue Zhang, Fushan Li, Qingqing Fan, Anna S. Guan, Nathan Fischel-Ghosian, Xiaoli Zhao & Min-Xin Guan. (2017) Biochemical Evidence for a Nuclear Modifier Allele (A10S) in TRMU (Methylaminomethyl-2-thiouridylate-methyltransferase) Related to Mitochondrial tRNA Modification in the Phenotypic Manifestation of Deafness-associated 12S rRNA Mutation. Journal of Biological Chemistry 292:7, pages 2881-2892.
Crossref
Silke Leimkühler, Martin Bühning & Lena Beilschmidt. (2017) Shared Sulfur Mobilization Routes for tRNA Thiolation and Molybdenum Cofactor Biosynthesis in Prokaryotes and Eukaryotes. Biomolecules 7:4, pages 5.
Crossref
Siddhartha Sankar Satapathy, Bhesh Raj Powdel, Alak Kumar Buragohain & Suvendra Kumar Ray. (2016) Discrepancy among the synonymous codons with respect to their selection as optimal codon in bacteria. DNA Research 23:5, pages 441-449.
Crossref
Danni Chen, Feng Li, Qingxian Yang, Miao Tian, Zengming Zhang, Qinghai Zhang, Ye Chen & Min-Xin Guan. (2016) The defective expression of gtpbp3 related to tRNA modification alters the mitochondrial function and development of zebrafish. The International Journal of Biochemistry & Cell Biology 77, pages 1-9.
Crossref
Markus Duechler, Grażyna Leszczyńska, Elzbieta Sochacka & Barbara Nawrot. (2016) Nucleoside modifications in the regulation of gene expression: focus on tRNA. Cellular and Molecular Life Sciences 73:16, pages 3075-3095.
Crossref
Marcus Fislage, Lina Wauters & Wim Versées. (2016) Invited review: MnmE, a GTPase that drives a complex tRNA modification reaction. Biopolymers 105:8, pages 568-579.
Crossref
Peter T. S. van der Gulik & Wouter D. Hoff. (2016) Anticodon Modifications in the tRNA Set of LUCA and the Fundamental Regularity in the Standard Genetic Code. PLOS ONE 11:7, pages e0158342.
Crossref
Naoki Shigi. 2016. Modified Nucleic Acids in Biology and Medicine. Modified Nucleic Acids in Biology and Medicine 55 71 .
Ana Martínez-Zamora, Salvador Meseguer, Juan M. Esteve, Magda Villarroya, Carmen Aguado, J. Antonio Enríquez, Erwin Knecht & M.-Eugenia Armengod. (2015) Defective Expression of the Mitochondrial-tRNA Modifying Enzyme GTPBP3 Triggers AMPK-Mediated Adaptive Responses Involving Complex I Assembly Factors, Uncoupling Protein 2, and the Mitochondrial Pyruvate Carrier. PLOS ONE 10:12, pages e0144273.
Crossref
Daniel C. Shippy & Amin A. Fadl. (2015) RNA modification enzymes encoded by the gid operon: Implications in biology and virulence of bacteria. Microbial Pathogenesis 89, pages 100-107.
Crossref
Karolina Bartosik & Grazyna Leszczynska. (2015) Synthesis of various substituted 5-methyluridines (xm 5 U) and 2-thiouridines (xm 5 s 2 U) via nucleophilic substitution of 5-pivaloyloxymethyluridine/2-thiouridine. Tetrahedron Letters 56:47, pages 6593-6597.
Crossref

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.