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Research Paper

Retrotransposons as a major source of epigenetic variations in the mammalian genome

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Pages 370-382 | Received 12 Sep 2011, Accepted 23 Jan 2012, Published online: 01 Apr 2012

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Christopher Faulk, Jung H. Kim, Olivia S. Anderson, Muna S. Nahar, Tamara R. Jones, Maureen A. Sartor & Dana C. Dolinoy. (2016) Detection of differential DNA methylation in repetitive DNA of mice and humans perinatally exposed to bisphenol A. Epigenetics 11:7, pages 489-500.
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Sharon Schlesinger & Stephen P. Goff. (2015) Retroviral Transcriptional Regulation and Embryonic Stem Cells: War and Peace. Molecular and Cellular Biology 35:5, pages 770-777.
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Articles from other publishers (22)

Benpeng Miao, Shuhua Fu, Cheng Lyu, Paul Gontarz, Ting Wang & Bo Zhang. (2020) Tissue-specific usage of transposable element-derived promoters in mouse development. Genome Biology 21:1.
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Rita Rebollo, Mariana Galvão-Ferrarini, Liane Gagnier, Ying Zhang, Ardian Ferraj, Christine R. Beck, Matthew C. Lorincz & Dixie L. Mager. (2020) Inter-Strain Epigenomic Profiling Reveals a Candidate IAP Master Copy in C3H Mice. Viruses 12:7, pages 783.
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Dayna Dreger, Heidi Anderson, Jonas Donner, Jessica Clark, Arlene Dykstra, Angela Hughes & Kari Ekenstedt. (2020) Atypical Genotypes for Canine Agouti Signaling Protein Suggest Novel Chromosomal Rearrangement. Genes 11:7, pages 739.
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Tessa M. Bertozzi & Anne C. Ferguson-Smith. (2020) Metastable epialleles and their contribution to epigenetic inheritance in mammals. Seminars in Cell & Developmental Biology 97, pages 93-105.
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Bambarendage P. U. Perera, Christopher Faulk, Laurie K. Svoboda, Jaclyn M. Goodrich & Dana C. Dolinoy. (2019) The role of environmental exposures and the epigenome in health and disease. Environmental and Molecular Mutagenesis 61:1, pages 176-192.
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Dana M. Freeman & Zhibin Wang. 2019. Transgenerational Epigenetics. Transgenerational Epigenetics 137 156 .
Anastasiya Kazachenka, Tessa M. Bertozzi, Marcela K. Sjoberg-Herrera, Nic Walker, Joseph Gardner, Richard Gunning, Elena Pahita, Sarah Adams, David Adams & Anne C. Ferguson-Smith. (2018) Identification, Characterization, and Heritability of Murine Metastable Epialleles: Implications for Non-genetic Inheritance. Cell 175:5, pages 1259-1271.e13.
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Folami Y. Ideraabdullah & Steven H. Zeisel. (2018) Dietary Modulation of the Epigenome. Physiological Reviews 98:2, pages 667-695.
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Manoj Kannan, Jingfeng Li, Sarah E. Fritz, Kathryn E. Husarek, Jonathan C. Sanford, Teresa L. Sullivan, Pawan Kumar Tiwary, Wenfeng An, Jef D. Boeke & David E. Symer. (2017) Dynamic silencing of somatic L1 retrotransposon insertions reflects the developmental and cellular contexts of their genomic integration. Mobile DNA 8:1.
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Vasavi Sundaram, Mayank N. K. Choudhary, Erica Pehrsson, Xiaoyun Xing, Christopher Fiore, Manishi Pandey, Brett Maricque, Methma Udawatta, Duc Ngo, Yujie Chen, Asia Paguntalan, Tammy Ray, Ava Hughes, Barak A. Cohen & Ting Wang. (2017) Functional cis-regulatory modules encoded by mouse-specific endogenous retrovirus. Nature Communications 8:1.
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Harald Oey, Luke Isbel, Peter Hickey, Basant Ebaid & Emma Whitelaw. (2015) Genetic and epigenetic variation among inbred mouse littermates: identification of inter-individual differentially methylated regions. Epigenetics & Chromatin 8:1.
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Suzanne N. Martos, Wan-yee Tang & Zhibin Wang. (2015) Elusive inheritance: Transgenerational effects and epigenetic inheritance in human environmental disease. Progress in Biophysics and Molecular Biology 118:1-2, pages 44-54.
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Qi Fu, Robert A. McKnight, Christopher W. Callaway, Xing Yu, Robert H. Lane & Amber V. Majnik. (2014) Intrauterine growth restriction disrupts developmental epigenetics around distal growth hormone response elements on the rat hepatic IGF‐1 gene. The FASEB Journal 29:4, pages 1176-1184.
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Louis P. Watanabe & Nicole C. Riddle. 2015. Personalized Epigenetics. Personalized Epigenetics 17 53 .
Vasavi Sundaram, Yong Cheng, Zhihai Ma, Daofeng Li, Xiaoyun Xing, Peter Edge, Michael P. Snyder & Ting Wang. (2014) Widespread contribution of transposable elements to the innovation of gene regulatory networks. Genome Research 24:12, pages 1963-1976.
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Arundhati Bakshi & Joomyeong Kim. (2014) Retrotransposon-based profiling of mammalian epigenomes: DNA methylation of IAP LTRs in embryonic stem, somatic and cancer cells. Genomics 104:6, pages 538-544.
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Muhammad B. Ekram & Joomyeong Kim. (2014) High-Throughput Targeted Repeat Element Bisulfite Sequencing (HT-TREBS): Genome-Wide DNA Methylation Analysis of IAP LTR Retrotransposon. PLoS ONE 9:7, pages e101683.
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Michelle R. Newman, Pamela J. Sykes, Benjamin J. Blyth, Eva Bezak, Mark D. Lawrence, Katherine L. Morel & Rebecca J. Ormsby. (2014) A Single Whole-Body Low Dose X-Irradiation Does Not Affect L1, B1 and IAP Repeat Element DNA Methylation Longitudinally. PLoS ONE 9:3, pages e93016.
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Keiko Akagi, Jingfeng Li & David E. Symer. (2013) How do mammalian transposons induce genetic variation? A conceptual framework. BioEssays 35:4, pages 397-407.
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Marilyn B. Renfree, Shunsuke Suzuki & Tomoko Kaneko-Ishino. (2013) The origin and evolution of genomic imprinting and viviparity in mammals. Philosophical Transactions of the Royal Society B: Biological Sciences 368:1609, pages 20120151.
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Christopher Faulk, Amanda Barks & Dana C Dolinoy. (2013) Phylogenetic and DNA methylation analysis reveal novel regions of variable methylation in the mouse IAP class of transposons. BMC Genomics 14:1, pages 48.
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Rita Rebollo, Katharine Miceli-Royer, Ying Zhang, Sharareh Farivar, Liane Gagnier & Dixie L Mager. (2012) Epigenetic interplay between mouse endogenous retroviruses and host genes. Genome Biology 13:10, pages R89.
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