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Research Paper

DNA methylation analyses of urothelial carcinoma reveal distinct epigenetic subtypes and an association between gene copy number and methylation status

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Pages 858-867 | Published online: 18 Jun 2012

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Mark O. Kitchen, Richard T. Bryan, Richard D. Emes, John R. Glossop, Christopher Luscombe, K. K. Cheng, Maurice P. Zeegers, Nicholas D. James, Adam J. Devall, Charles A. Mein, Lyndon Gommersall, Anthony A. Fryer & William E. Farrell. (2016) Quantitative genome-wide methylation analysis of high-grade non-muscle invasive bladder cancer . Epigenetics 11:3, pages 237-246.
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Thomas Sanford, Maxwell V. Meng, Reema Railkar, Piyush K. Agarwal & Sima P. Porten. (2018) Integrative analysis of the epigenetic basis of muscle-invasive urothelial carcinoma. Clinical Epigenetics 10:1.
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Sima P. Porten. (2018) Epigenetic Alterations in Bladder Cancer. Current Urology Reports 19:12.
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Seth P. Lerner, David J. McConkey, Katherine A. Hoadley, Keith S. Chan, William Y. Kim, François Radvanyi, Mattias Höglund & Francisco X. Real. (2016) Bladder Cancer Molecular Taxonomy: Summary from a Consensus Meeting. Bladder Cancer 2:1, pages 37-47.
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C.A. Moylan & S.K. Murphy. 2016. Medical Epigenetics. Medical Epigenetics 11 31 .
Mattias Aine, Gottfrid Sjödahl, Pontus Eriksson, Srinivas Veerla, David Lindgren, Markus Ringnér & Mattias Höglund. (2015) Integrative epigenomic analysis of differential DNA methylation in urothelial carcinoma. Genome Medicine 7:1.
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Shahrokh F Shariat & Evanguelos XylinasMargaret A Knowles & Carolyn D Hurst. 2015. Advances in Bladder Cancer Management. Advances in Bladder Cancer Management 40 59 .
Ida Johansson, Martin Lauss, Karolina Holm, Johan Staaf, Cecilia Nilsson, Marie-Louise Fjällskog, Markus Ringnér & Ingrid Hedenfalk. (2015) Genome methylation patterns in male breast cancer - Identification of an epitype with hypermethylation of polycomb target genes. Molecular Oncology 9:8, pages 1565-1579.
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Crossref
Jin Zhou, Wei-Peng Yong, Chui Sun Yap, Aadhitthya Vijayaraghavan, Rohit Anthony Sinha, Brijesh Kumar Singh, Sam Xiu, Sravanthy Manesh, Anna Ngo, Andrea Lim, Carolyn Ang, Chen Xie, Foong Ying Wong, Suling J. Lin, Wei Keat Wan, Iain Beehuat Tan, Horst Flotow, Patrick Tan, Kiat-Hon Lim, Paul Michael Yen & Liang Kee Goh. (2015) An integrative approach identified genes associated with drug response in gastric cancer. Carcinogenesis 36:4, pages 441-451.
Crossref
G. Niegisch, M.J. Hoffmann, E.A. Koutsogiannouli & W.A. Schulz. (2015) Epigenetik des UrothelkarzinomsEpigenetics in urothelial cancer. Der Urologe 54:4, pages 526-532.
Crossref
Margaret A. Knowles & Carolyn D. Hurst. (2014) Molecular biology of bladder cancer: new insights into pathogenesis and clinical diversity. Nature Reviews Cancer 15:1, pages 25-41.
Crossref
Wolfgang A. Schulz, Evangelia A. Koutsogiannouli, Günter Niegisch & Michèle J. Hoffmann. 2015. Cancer Epigenetics. Cancer Epigenetics 183 215 .
Nadine Bonberg, Beate Pesch, Thomas Behrens, Georg Johnen, Dirk Taeger, Katarzyna Gawrych, Christian Schwentner, Harald Wellhäußer, Matthias Kluckert, Gabriele Leng, Michael Nasterlack, Christoph Oberlinner, Arnulf Stenzl & Thomas Brüning. (2014) Chromosomal alterations in exfoliated urothelial cells from bladder cancer cases and healthy men: a prospective screening study. BMC Cancer 14:1.
Crossref
Anna Karlsson, Mats Jönsson, Martin Lauss, Hans Brunnström, Per Jönsson, Åke Borg, Göran Jönsson, Markus Ringnér, Maria Planck & Johan Staaf. (2014) Genome-wide DNA Methylation Analysis of Lung Carcinoma Reveals One Neuroendocrine and Four Adenocarcinoma Epitypes Associated with Patient Outcome. Clinical Cancer Research 20:23, pages 6127-6140.
Crossref
Tachapol Muangsub, Jarunya Samsuwan, Pumipat Tongyoo, Nakarin Kitkumthorn & Apiwat Mutirangura. (2014) Analysis of methylation microarray for tissue specific detection. Gene 553:1, pages 31-41.
Crossref
Matahi Moarii, Alice Pinheiro, Brigitte Sigal-Zafrani, Alain Fourquet, Martial Caly, Nicolas Servant, Véronique Stoven, Jean-Philippe Vert & Fabien Reyal. (2014) Epigenomic Alterations in Breast Carcinoma from Primary Tumor to Locoregional Recurrences. PLoS ONE 9:8, pages e103986.
Crossref
Longxin Wang, Dian Fu, Yongbin Qiu, Xiaoxiao Xing, Feng Xu, Conghui Han, Xiaofeng Xu, Zhifeng Wei, Zhengyu Zhang, Jingping Ge, Wen Cheng & Hai-Long Xie. (2014) Genome-wide screening and identification of long noncoding RNAs and their interaction with protein coding RNAs in bladder urothelial cell carcinoma. Cancer Letters 349:1, pages 77-86.
Crossref
Yung-Luen Yu, Kuo-Jung Su, Ming-Ju Hsieh, Shian-Shiang Wang, Po-Hui Wang, Wei-Chun Weng & Shun-Fa Yang. (2014) Impact of EZH2 Polymorphisms on Urothelial Cell Carcinoma Susceptibility and Clinicopathologic Features. PLoS ONE 9:4, pages e93635.
Crossref
Meeta P Pradhan, Akshay Desai & Mathew J Palakal. (2013) Systems biology approach to stage-wise characterization of epigenetic genes in lung adenocarcinoma. BMC Systems Biology 7:1.
Crossref
Feng Xu, Qingling Zhang, Wen Cheng, Zhengyu Zhang, Jiandong Wang & Jingping Ge. (2013) Effect of miR-29b-1* and miR-29c knockdown on cell growth of the bladder cancer cell line T24. Journal of International Medical Research 41:6, pages 1803-1810.
Crossref
Pontus Eriksson, Mattias Aine, Gottfrid Sjödahl, Johan Staaf, David Lindgren & Mattias Höglund. (2013) Detailed Analysis of Focal Chromosome Arm 1q and 6p Amplifications in Urothelial Carcinoma Reveals Complex Genomic Events on 1q, and SOX4 as a Possible Auxiliary Target on 6p. PLoS ONE 8:6, pages e67222.
Crossref
Steve Horvath. (2013) DNA methylation age of human tissues and cell types. Genome Biology 14:10, pages R115.
Crossref
Stine H. Kresse, Halfdan Rydbeck, Magne Skårn, Heidi M. Namløs, Ana H. Barragan-Polania, Anne-Marie Cleton-Jansen, Massimo Serra, Knut Liestøl, Pancras C. W. Hogendoorn, Eivind Hovig, Ola Myklebost & Leonardo A. Meza-Zepeda. (2012) Integrative Analysis Reveals Relationships of Genetic and Epigenetic Alterations in Osteosarcoma. PLoS ONE 7:11, pages e48262.
Crossref
Alexandre How Kit, Helene Myrtue Nielsen & Jörg Tost. (2012) DNA methylation based biomarkers: Practical considerations and applications. Biochimie 94:11, pages 2314-2337.
Crossref