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Epigenetics Volume 7, 2012 - Issue 12
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Research Paper

Epigenetic biomarkers of T-cells in human glioma

John K. Wiencke Department of Neurological Surgery; University of California San Francisco; San Francisco, CA USACorrespondence[email protected]
,
William P. Accomando Department of Pathology and Laboratory Medicine; Brown University; Providence, RI USA
,
Shichun Zheng Department of Neurological Surgery; University of California San Francisco; San Francisco, CA USA
,
Joe Patoka Department of Neurological Surgery; University of California San Francisco; San Francisco, CA USA
,
Xiaoqin Dou Department of Neurological Surgery; University of California San Francisco; San Francisco, CA USA
,
Joanna J. Phillips Department of Neurological Surgery; University of California San Francisco; San Francisco, CA USA
,
George Hsuang Department of Neurological Surgery; University of California San Francisco; San Francisco, CA USA
,
Brock C. Christensen Department of Pathology and Laboratory Medicine; Brown University; Providence, RI USA
,
E. Andres Houseman Department of Epidemiology; Brown University; Providence, RI USA
,
Devin C. Koestler Department of Epidemiology; Brown University; Providence, RI USA
,
Paige Bracci Department of Epidemiology & Biostatistics; University of California San Francisco; San Francisco, CA USA
,
Joseph L. Wiemels Department of Epidemiology & Biostatistics; University of California San Francisco; San Francisco, CA USA
,
Margaret Wrensch Department of Neurological Surgery; University of California San Francisco; San Francisco, CA USA
,
Heather H. Nelson Department of Epidemiology; University of Minnesota; Minneapolis, MN USA
&
Karl T. Kelsey Department of Pathology and Laboratory Medicine; Brown University; Providence, RI USA; Department of Epidemiology; Brown University; Providence, RI USA
 show all
Pages 1391-1402 | Published online: 29 Oct 2012

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Lijie Zhai, Erik Ladomersky, Kristen L. Lauing, Meijing Wu, Denise M. Scholtens, Rohan Savoor, Bin Zhang, Jennifer D. Wu, Craig Horbinski, Rimas V. Lukas, David C. Binder & Derek A. Wainwright. (2019) Commentary: preclinical efficacy of immune-checkpoint monotherapy does not recapitulate corresponding biomarkers-based clinical predictions in glioblastoma by Garg et al. (2017). OncoImmunology 8:3.
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John K Wiencke, Paige M Bracci, George Hsuang, Shichun Zheng, Helen Hansen, Margaret R Wrensch, Terri Rice, Melissa Eliot & Karl T Kelsey. (2014) A comparison of DNA methylation specific droplet digital PCR (ddPCR) and real time qPCR with flow cytometry in characterizing human T cells in peripheral blood. Epigenetics 9:10, pages 1360-1365.
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Scott M Langevin, E Andres Houseman, William P Accomando, Devin C Koestler, Brock C Christensen, Heather H Nelson, Margaret R Karagas, Carmen J Marsit, John K Wiencke & Karl T Kelsey. (2014) Leukocyte-adjusted epigenome-wide association studies of blood from solid tumor patients. Epigenetics 9:6, pages 884-895.
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Articles from other publishers (25)

Sang Hyuk Lee, Seung Hwan Kim, Taek Min Nam, Ji Hwan Jang, Kyu Hong Kim, Young-Sam Lee, Minseok S. Kim, Mee-Seon Kim, Sung Yup Jin, Moonok Lee, Sung-Hun Lee & Young Zoon Kim. (2023) Epigenetic Regulation of the Expression of T Cell Stimulatory and Inhibitory Factors by Histone H3 Lysine Modification Enzymes and Its Prognostic Roles in Glioblastoma. Journal of Korean Medical Science 38:33.
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Hamza Ali, Romée Harting, Ralph de Vries, Meedie Ali, Thomas Wurdinger & Myron G. Best. (2021) Blood-Based Biomarkers for Glioma in the Context of Gliomagenesis: A Systematic Review. Frontiers in Oncology 11.
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Mahmoud Gharbavi, Hossein Danafar, Jafar Amani & Ali Sharafi. (2021) Immuno-informatics analysis and expression of a novel multi-domain antigen as a vaccine candidate against glioblastoma. International Immunopharmacology 91, pages 107265.
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Lidija Malic, Jamal Daoud, Matthias Geissler, Alex Boutin, Ljuboje Lukic, Mojra Janta, Abdelrahman Elmanzalawy & Teodor Veres. (2019) Epigenetic subtyping of white blood cells using a thermoplastic elastomer-based microfluidic emulsification device for multiplexed, methylation-specific digital droplet PCR. The Analyst 144:22, pages 6541-6553.
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Pin-Yuan Chen, Caren Yu-Ju Wu, Jian-He Fang, Hsiu-Chi Chen, Li-Ying Feng, Chiung-Yin Huang, Kuo-Chen Wei, Jia-You Fang & Chun-Yen Lin. (2019) Functional Change of Effector Tumor-Infiltrating CCR5+CD38+HLA-DR+CD8+ T Cells in Glioma Microenvironment. Frontiers in Immunology 10.
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Annette M. Molinaro, Jennie W. Taylor, John K. Wiencke & Margaret R. Wrensch. (2019) Genetic and molecular epidemiology of adult diffuse glioma. Nature Reviews Neurology 15:7, pages 405-417.
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Alexander J. Titus, Rachel M. Gallimore, Lucas A. Salas & Brock C. Christensen. (2017) Cell-type deconvolution from DNA methylation: a review of recent applications. Human Molecular Genetics 26:R2, pages R216-R224.
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Ye Shu, Qinghua Hu, Hai Long, Christopher Chang, Qianjin Lu & Rong Xiao. (2016) Epigenetic Variability of CD4+CD25+ Tregs Contributes to the Pathogenesis of Autoimmune Diseases. Clinical Reviews in Allergy & Immunology 52:2, pages 260-272.
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Sebastian Dietmar Barth, Rudolf Kaaks, Theron Johnson, Verena Katzke, Katharina Gellhaus, Janika Josephin Schulze, Sven Olek & Tilman Kühn. (2016) The Ratio of Regulatory (FOXP3 +) to Total (CD3 +) T Cells Determined by Epigenetic Cell Counting and Cardiovascular Disease Risk: A Prospective Case-cohort Study in Non-diabetics. EBioMedicine 11, pages 151-156.
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Abhishek D. GargLien VandenberkCarolien KoksTina VerschuereLouis BoonStefaan W. Van GoolPatrizia Agostinis. (2016) Dendritic cell vaccines based on immunogenic cell death elicit danger signals and T cell–driven rejection of high-grade glioma. Science Translational Medicine 8:328.
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Dominique S. Michaud, E. Andres Houseman, Carmen J. Marsit, Heather H. Nelson, John K. Wiencke & Karl T. Kelsey. (2015) Understanding the Role of the Immune System in the Development of Cancer: New Opportunities for Population-Based Research. Cancer Epidemiology, Biomarkers & Prevention 24:12, pages 1811-1819.
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Sebastian Dietmar Barth, Janika Josephine Schulze, Tilman Kühn, Eva Raschke, Anika Hüsing, Theron Johnson, Rudolf Kaaks & Sven Olek. (2015) Treg-Mediated Immune Tolerance and the Risk of Solid Cancers: Findings From EPIC-Heidelberg. Journal of the National Cancer Institute 107:11, pages djv224.
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Agustí Alentorn, Alberto Durán-Peña, Andigoni Malousi, Yannick Marie, Karima Mokhtari, Marc Sanson, Khê Hoang-Xuan, Jean-Yves Delattre, Ahmed Idbaih & Charles Vecht. (2015) Differential gene methylation in paired glioblastomas suggests a role of immune response pathways in tumor progression. Journal of Neuro-Oncology 124:3, pages 385-392.
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A. A. Thomas, J. L. Fisher, G. J. Rahme, T. H. Hampton, U. Baron, S. Olek, T. Schwachula, C. H. Rhodes, J. Gui, L. J. Tafe, G. J. Tsongalis, J. A. Lefferts, H. Wishart, J. Kleen, M. Miller, C. A. Whipple, F. B. de Abreu, M. S. Ernstoff & C. E. Fadul. (2015) Regulatory T cells are not a strong predictor of survival for patients with glioblastoma. Neuro-Oncology 17:6, pages 801-809.
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Myron G. Best, Nik Sol, Sebastiaan Zijl, Jaap C. Reijneveld, Pieter Wesseling & Thomas Wurdinger. (2015) Liquid biopsies in patients with diffuse glioma. Acta Neuropathologica 129:6, pages 849-865.
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Na Cai, Simon Chang, Yihan Li, Qibin Li, Jingchu Hu, Jieqin Liang, Li Song, Warren Kretzschmar, Xiangchao Gan, Jerome Nicod, Margarita Rivera, Hong Deng, Bo Du, Keqing Li, Wenhu Sang, Jingfang Gao, Shugui Gao, Baowei Ha, Hung-Yao Ho, Chunmei Hu, Jian Hu, Zhenfei Hu, Guoping Huang, Guoqing Jiang, Tao Jiang, Wei Jin, Gongying Li, Kan Li, Yi Li, Yingrui Li, Youhui Li, Yu-Ting Lin, Lanfen Liu, Tiebang Liu, Ying Liu, Yuan Liu, Yao Lu, Luxian Lv, Huaqing Meng, Puyi Qian, Hong Sang, Jianhua Shen, Jianguo Shi, Jing Sun, Ming Tao, Gang Wang, Guangbiao Wang, Jian Wang, Linmao Wang, Xueyi Wang, Xumei Wang, Huanming Yang, Lijun Yang, Ye Yin, Jinbei Zhang, Kerang Zhang, Ning Sun, Wei Zhang, Xiuqing Zhang, Zhen Zhang, Hui Zhong, Gerome Breen, Jun Wang, Jonathan Marchini, Yiping Chen, Qi Xu, Xun Xu, Richard Mott, Guo-Jen Huang, Kenneth Kendler & Jonathan Flint. (2015) Molecular Signatures of Major Depression. Current Biology 25:9, pages 1146-1156.
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E. Andrés Houseman. 2015. Computational and Statistical Epigenomics. Computational and Statistical Epigenomics 35 50 .
Changhua Zhuo, Zhiyuan Li, Ye Xu, Yuwei Wang, Qingguo Li, Junjie Peng, Hongtu Zheng, Peng Wu, Bin Li & Sanjun Cai. (2014) Higher FOXP3-TSDR demethylation rates in adjacent normal tissues in patients with colon cancer were associated with worse survival. Molecular Cancer 13:1.
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Michael Platten, Katharina Ochs, Dieter Lemke, Christiane Opitz & Wolfgang Wick. (2014) Microenvironmental Clues for Glioma Immunotherapy. Current Neurology and Neuroscience Reports 14:4.
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William P Accomando, John K Wiencke, E Houseman, Heather H Nelson & Karl T Kelsey. (2014) Quantitative reconstruction of leukocyte subsets using DNA methylation. Genome Biology 15:3, pages R50.
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Qi Yue, Xin Zhang, Hong-xing Ye, Yin Wang, Zun-guo Du, Yu Yao & Ying Mao. (2013) The prognostic value of Foxp3+ tumor-infiltrating lymphocytes in patients with glioblastoma. Journal of Neuro-Oncology 116:2, pages 251-259.
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Scott M. Langevin & Karl T. Kelsey. (2013) The fate is not always written in the genes: Epigenomics in epidemiologic studies. Environmental and Molecular Mutagenesis 54:7, pages 533-541.
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Alissa A Thomas, Jan L Fisher, Marc S Ernstoff & Camilo E Fadul. (2013) Vaccine-based immunotherapy for glioblastoma. CNS Oncology 2:4, pages 331-349.
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Hua Feng. (2013) Implantation of GL261 neurospheres into C57/BL6 mice: A more reliable syngeneic graft model for research on glioma-initiating cells. International Journal of Oncology.
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Cassandra L Smith. (2013) Conference Scene: 2nd Cancer Epigenetics Conference. Epigenomics 5:2, pages 123-130.
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