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Plant Signaling & Behavior Volume 8, 2013 - Issue 1
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Research Paper

Identification of an EMS-induced causal mutation in a gene required for boron-mediated root development by low-coverage genome re-sequencing in Arabidopsis

Ryo Tabata Graduate School of Science and Technology; Kumamoto University; Kumamoto, Japan
,
Takehiro Kamiya Department of Applied Biological Chemistry; Graduate School of Agricultural and Life Sciences; University of Tokyo; Tokyo, Japan
,
Shuji Shigenobu Functional Genomics Facility; National Institute for Basic Biology; Okazaki, Japan
,
Katsushi Yamaguchi Functional Genomics Facility; National Institute for Basic Biology; Okazaki, Japan
,
Masashi Yamada Department of Biology and IGSP Center for Systems Biology; Duke University; Durham, NC USA
,
Mitsuyasu Hasebe Division of Evolutionary Biology; National Institute for Basic Biology; Okazaki, Japan; School of Life Science; The Graduate University for Advanced Studies; Okazaki, Japan; ERATO; Japan Science and Technology Agency; Okazaki, Japan
,
Toru Fujiwara Department of Applied Biological Chemistry; Graduate School of Agricultural and Life Sciences; University of Tokyo; Tokyo, Japan
&
Shinichiro Sawa Graduate School of Science and Technology; Kumamoto University; Kumamoto, Japan
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Article: e22534 | Received 01 Sep 2012, Accepted 12 Oct 2012, Published online: 26 Oct 2012

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Stacy D. Singer, John D. Laurie, Andriy Bilichak, Santosh Kumar & Jaswinder Singh. (2021) Genetic Variation and Unintended Risk in the Context of Old and New Breeding Techniques. Critical Reviews in Plant Sciences 40:1, pages 68-108.
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Yusuke Shikanai, Mutsumi Yamagami, Shuji Shigenobu, Katsushi Yamaguchi, Takehiro Kamiya & Toru Fujiwara. (2015) Arabidopsis thaliana PRL1 is involved in low-calcium tolerance. Soil Science and Plant Nutrition 61:6, pages 951-956.
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Articles from other publishers (27)

Juntaro Negi, Tomoki Obata, Sakura Nishimura, Boseok Song, Sho Yamagaki, Yuhei Ono, Makoto Okabe, Natsumi Hoshino, Kohei Fukatsu, Ryo Tabata, Katsushi Yamaguchi, Shuji Shigenobu, Masashi Yamada, Mitsuyasu Hasebe, Shinichiro Sawa, Toshinori Kinoshita, Ikuo Nishida & Koh Iba. (2023) PECT1 , a rate‐limiting enzyme in phosphatidylethanolamine biosynthesis, is involved in the regulation of stomatal movement in Arabidopsis . The Plant Journal 115:2, pages 563-576.
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Luis Bolaños, Isidro Abreu, Ildefonso Bonilla, Juan J. Camacho-Cristóbal & María Reguera. (2023) What Can Boron Deficiency Symptoms Tell Us about Its Function and Regulation?. Plants 12:4, pages 777.
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Xi Chen, Steven M Smith, Sergey Shabala & Min Yu. (2023) Phytohormones in plant responses to boron deficiency and toxicity. Journal of Experimental Botany 74:3, pages 743-754.
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Sneha Adhikari, Hirdayesh Anuragi, Kailash Chandra, Shilpa Hanmantrao Tarte, Shish Ram Dhaka, Hanuman Singh Jatav & Kiran Hingonia. 2023. Sustainable Plant Nutrition. Sustainable Plant Nutrition 107 151 .
Han-Chung Lee, Steve Binos, Kelly Chapman, Sacha B Pulsford, Ariel Ivanovici, John P Rathjen & Michael A Djordjevic. (2021) A new method to visualize CEP hormone–CEP receptor interactions in vascular tissue in vivo . Journal of Experimental Botany 72:18, pages 6164-6174.
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Yupu Huang, Sheliang Wang, Lei Shi & Fangsen Xu. (2021) JASMONATE RESISTANT 1 negatively regulates root growth under boron deficiency in Arabidopsis. Journal of Experimental Botany 72:8, pages 3108-3121.
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Parmeshwar K. Sahu, Richa Sao, Suvendu Mondal, Gautam Vishwakarma, Sudhir Kumar Gupta, Vinay Kumar, Sudhir Singh, Deepak Sharma & Bikram K. Das. (2020) Next Generation Sequencing Based Forward Genetic Approaches for Identification and Mapping of Causal Mutations in Crop Plants: A Comprehensive Review. Plants 9:10, pages 1355.
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Guili Yang, Wenlong Luo, Jian Zhang, Xiancheng Yan, Yan Du, Libin Zhou, Wenjian Li, Hui Wang, Zhiqiang Chen & Tao Guo. (2019) Genome-Wide Comparisons of Mutations Induced by Carbon-Ion Beam and Gamma-Rays Irradiation in Rice via Resequencing Multiple Mutants. Frontiers in Plant Science 10.
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Marc C. Heuermann, Mario G. Rosso, Martin Mascher, Ronny Brandt, Henning Tschiersch, Lothar Altschmied & Thomas Altmann. (2019) Combining next‐generation sequencing and progeny testing for rapid identification of induced recessive and dominant mutations in maize M 2 individuals . The Plant Journal 100:4, pages 851-862.
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Laura Poza-Viejo, Isidro Abreu, Mary Paz González-García, Paúl Allauca, Ildefonso Bonilla, Luis Bolaños & María Reguera. (2018) Boron deficiency inhibits root growth by controlling meristem activity under cytokinin regulation. Plant Science 270, pages 176-189.
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Bian Bian, Sae Kageshima, Kenji Yano, Toru Fujiwara & Takehiro Kamiya. (2018) Screening Arabidopsis thaliana mutants for low sensitivity to manganese identifies novel alleles of NRAMP1 and PGSIP6. Journal of Experimental Botany 69:7, pages 1795-1803.
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Wen Cao, Yalin Du, Chao Wang, Lilin Xu & Tao Wu. (2018) <i>Cscs</i> encoding chorismate synthase is a candidate gene for leaf variegation mutation in cucumber. Breeding Science 68:5, pages 571-581.
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Yan Du, Shanwei Luo, Lixia Yu, Tao Cui, Xia Chen, Jiangyan Yang, Xin Li, Wenjian Li, Jufang Wang & Libin Zhou. (2018) Strategies for identification of mutations induced by carbon-ion beam irradiation in Arabidopsis thaliana by whole genome re-sequencing. Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis 807, pages 21-30.
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Fei Jiang, Tao Wang, Yuqi Wang, Leon V. Kochian, Fang Chen & Jiping Liu. (2017) Identification and characterization of suppressor mutants of stop1. BMC Plant Biology 17:1.
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Yan Du, Shanwei Luo, Xin Li, Jiangyan Yang, Tao Cui, Wenjian Li, Lixia Yu, Hui Feng, Yuze Chen, Jinhu Mu, Xia Chen, Qingyao Shu, Tao Guo, Wenlong Luo & Libin Zhou. (2017) Identification of Substitutions and Small Insertion-Deletions Induced by Carbon-Ion Beam Irradiation in Arabidopsis thaliana. Frontiers in Plant Science 8.
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Wurina Tong, Akihiro Imai, Ryo Tabata, Shuji Shigenobu, Katsushi Yamaguchi, Masashi Yamada, Mitsuyasu Hasebe, Shinichiro Sawa, Hiroyasu Motose & Taku Takahashi. (2016) Polyamine Resistance Is Increased by Mutations in a Nitrate Transporter Gene NRT1.3 (AtNPF6.4) in Arabidopsis thaliana. Frontiers in Plant Science 7.
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Koshiro Oda, Takehiro Kamiya, Yusuke Shikanai, Shuji Shigenobu, Katsushi Yamaguchi & Toru Fujiwara. (2016) The Arabidopsis Mg Transporter, MRS2-4, is Essential for Mg Homeostasis Under Both Low and High Mg Conditions. Plant and Cell Physiology 57:4, pages 754-763.
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Xinxin Li, Rensen Zeng & Hong Liao. (2016) Improving crop nutrient efficiency through root architecture modifications. Journal of Integrative Plant Biology 58:3, pages 193-202.
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Noriko Shimizu, Takashi Ishida, Masashi Yamada, Shuji Shigenobu, Ryo Tabata, Atsuko Kinoshita, Katsushi Yamaguchi, Mitsuyasu Hasebe, Kanako Mitsumasu & Shinichiro Sawa. (2015) BAM 1 and RECEPTOR ‐ LIKE PROTEIN KINASE 2 constitute a signaling pathway and modulate CLE peptide‐triggered growth inhibition in A rabidopsis root . New Phytologist 208:4, pages 1104-1113.
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Tao Wu, Takehiro Kamiya, Hiroko Yumoto, Naoyuki Sotta, Yamaguchi Katsushi, Shuji Shigenobu, Yoshikatsu Matsubayashi & Toru Fujiwara. (2015) An Arabidopsis thaliana copper-sensitive mutant suggests a role of phytosulfokine in ethylene production. Journal of Experimental Botany 66:13, pages 3657-3667.
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Koichi Toyokura, Katsushi Yamaguchi, Shuji Shigenobu, Hidehiro Fukaki, Kiyoshi Tatematsu & Kiyotaka Okada. (2015) Mutations in Plastidial 5-Aminolevulinic Acid Biosynthesis Genes Suppress a Pleiotropic Defect in Shoot Development of a Mitochondrial GABA Shunt Mutant in Arabidopsis. Plant and Cell Physiology 56:6, pages 1229-1238.
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Ooi-kock Teh, Noriyuki Hatsugai, Kentaro Tamura, Kentaro Fuji, Ryo Tabata, Katsushi Yamaguchi, Shuji Shingenobu, Masashi Yamada, Mitsuyasu Hasebe, Shinichiro Sawa, Tomoo Shimada & Ikuko Hara-Nishimura. (2015) BEACH-Domain Proteins Act Together in a Cascade to Mediate Vacuolar Protein Trafficking and Disease Resistance in Arabidopsis. Molecular Plant 8:3, pages 389-398.
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Bernard Billoud, Émilie Jouanno, Zofia Nehr, Baptiste Carton, Élodie Rolland, Sabine Chenivesse & Bénédicte Charrier. (2015) Localization of causal locus in the genome of the brown macroalga Ectocarpus: NGS-based mapping and positional cloning approaches. Frontiers in Plant Science 6.
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Atsuko Kinoshita, Colette A. ten Hove, Ryo Tabata, Masashi Yamada, Noriko Shimizu, Takashi Ishida, Katsushi Yamaguchi, Shuji Shigenobu, Yumiko Takebayashi, Satoshi Iuchi, Masatomo Kobayashi, Tetsuya Kurata, Takuji Wada, Mitsunori Seo, Mitsuyasu Hasebe, Ikram Blilou, Hiroo Fukuda, Ben Scheres, Renze Heidstra, Yuji Kamiya & Shinichiro Sawa. (2015) A plant U-box protein, PUB4, regulates asymmetric cell division and cell proliferation in the root meristem. Development 142:3, pages 444-453.
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Takashi Ishida, Ryo Tabata, Masashi Yamada, Mitsuhiro Aida, Kanako Mitsumasu, Masayuki Fujiwara, Katsushi Yamaguchi, Shuji Shigenobu, Masayuki Higuchi, Hiroyuki Tsuji, Ko Shimamoto, Mitsuyasu Hasebe, Hiroo Fukuda & Shinichiro Sawa. (2014) Heterotrimeric G proteins control stem cell proliferation through CLAVATA signaling in Arabidopsis . EMBO reports 15:11, pages 1202-1209.
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Ryo Tabata & Shinichiro Sawa. (2014) Maturation processes and structures of small secreted peptides in plants. Frontiers in Plant Science 5.
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Masataka Uehara, Sheliang Wang, Takehiro Kamiya, Shuji Shigenobu, Katsushi Yamaguchi, Toru Fujiwara, Satoshi Naito & Junpei Takano. (2014) Identification and Characterization of an Arabidopsis Mutant with Altered Localization of NIP5;1, a Plasma Membrane Boric Acid Channel, Reveals the Requirement for d-Galactose in Endomembrane Organization. Plant and Cell Physiology 55:4, pages 704-714.
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