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RNA Biology Volume 7, 2010 - Issue 6
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Review

Roles of DEAD-box proteins in RNA and RNP Folding

Cynthia Pan Department of Chemistry and Biochemistry; Institute for Cellular and Molecular Biology; University of Texas at Austin; Austin, TX USA
&
Rick Russell Department of Chemistry and Biochemistry; Institute for Cellular and Molecular Biology; University of Texas at Austin; Austin, TX USACorrespondence[email protected]
Pages 667-676 | Published online: 01 Nov 2010

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Dasmanthie De Silva, Ya-Ting Tu, Alexey Amunts, Flavia Fontanesi & Antoni Barrientos. (2015) Mitochondrial ribosome assembly in health and disease. Cell Cycle 14:14, pages 2226-2250.
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Nora Sachsenmaier & Christina Waldsich. (2013) Mss116p. RNA Biology 10:1, pages 71-82.
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Rick Russell, Inga Jarmoskaite & Alan M. Lambowitz. (2013) Toward a molecular understanding of RNA remodeling by DEAD-box proteins. RNA Biology 10:1, pages 44-55.
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Articles from other publishers (33)

Amanda H. Mahnke, Siara K. Rouzer, Alexander M. Tseng, Nihal A. Salem & Rajesh C. Miranda. 2024. Epigenetics in Human Disease. Epigenetics in Human Disease 1141 1176 .
Satoru Shinriki & Hirotaka Matsui. (2022) Unique role of DDX41, a DEAD-box type RNA helicase, in hematopoiesis and leukemogenesis. Frontiers in Oncology 12.
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W. Luke Ward & Rick Russell. 2021. RNA Remodeling Proteins. RNA Remodeling Proteins 1 16 .
Zhenwei Zhang, Cindy L. Will, Karl Bertram, Olexandr Dybkov, Klaus Hartmuth, Dmitry E. Agafonov, Romina Hofele, Henning Urlaub, Berthold Kastner, Reinhard Lührmann & Holger Stark. (2020) Molecular architecture of the human 17S U2 snRNP. Nature 583:7815, pages 310-313.
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Qiuju Liang, Qinghe Geng, Ling Jiang, Meng Liang, Linhan Li, Chunyi Zhang & Weixuan Wang. (2020) Protein methylome analysis in Arabidopsis reveals regulation in RNA-related processes. Journal of Proteomics 213, pages 103601.
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Alexander M. Tseng, Amanda H. Mahnke, Nihal A. Salem & Rajesh C. Miranda. 2018. Epigenetics in Human Disease. Epigenetics in Human Disease 903 933 .
Aliana López de Victoria, Anthony F. T. Moore, Apostolos G. Gittis & Eda Koculi. (2017) Kinetics and Thermodynamics of DbpA Protein’s C-Terminal Domain Interaction with RNA. ACS Omega 2:11, pages 8033-8038.
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Aparna Kishor, Elizabeth J.F. White, Aerielle E. Matsangos, Zisui Yan, Bishal Tandukar & Gerald M. Wilson. (2017) Hsp70's RNA-binding and mRNA-stabilizing activities are independent of its protein chaperone functions. Journal of Biological Chemistry 292:34, pages 14122-14133.
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Anthony F. T. Moore, Riley C. Gentry & Eda Koculi. (2017) DbpA is a region-specific RNA helicase. Biopolymers 107:3, pages e23001.
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Hao Zhang, Zheng Xing, Saravana Kumar Kailasam Mani, Brigitte Bancel, David Durantel, Fabien Zoulim, Elizabeth J. Tran, Philippe Merle & Ourania Andrisani. (2016) RNA helicase DEAD box protein 5 regulates Polycomb repressive complex 2/Hox transcript antisense intergenic RNA function in hepatitis B virus infection and hepatocarcinogenesis. Hepatology 64:4, pages 1033-1048.
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Riley C. Gentry, Jared J. Childs, Jirair Gevorkyan, Yulia V. Gerasimova & Eda Koculi. (2016) Time course of large ribosomal subunit assembly in E. coli cells overexpressing a helicase inactive DbpA protein . RNA 22:7, pages 1055-1064.
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Wai Kit Ma, Bishnu P. Paudel, Zheng Xing, Ivan G. Sabath, David Rueda & Elizabeth J. Tran. (2016) Recruitment, Duplex Unwinding and Protein-Mediated Inhibition of the Dead-Box RNA Helicase Dbp2 at Actively Transcribed Chromatin. Journal of Molecular Biology 428:6, pages 1091-1106.
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Rick Russell. (2015) Unwinding the Mechanisms of a DEAD-Box RNA Helicase in Cancer. Journal of Molecular Biology 427:9, pages 1797-1800.
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Marina Rudan, Dominique Schneider, Tobias Warnecke & Anita Krisko. (2015) RNA chaperones buffer deleterious mutations in E. coli. eLife 4.
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W. Luke Ward & Rick Russell. 2015. RNA Remodeling Proteins. RNA Remodeling Proteins 1 16 .
Inga JarmoskaiteRick Russell. (2014) RNA Helicase Proteins as Chaperones and Remodelers. Annual Review of Biochemistry 83:1, pages 697-725.
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Rajesh C. Miranda & Sridevi Balaraman. 2014. Neurobiology of Alcohol Dependence. Neurobiology of Alcohol Dependence 497 521 .
Olga Fedorova. 2014. RNA Folding. RNA Folding 177 191 .
Mireia Giménez-Barcons, Isabel Alves-Rodrigues, Jennifer Jungfleisch, Priscilla M. Van Wynsberghe, Paul Ahlquist & Juana Díez. (2013) The Cellular Decapping Activators LSm1, Pat1, and Dhh1 Control the Ratio of Subgenomic to Genomic Flock House Virus RNAs. Journal of Virology 87:11, pages 6192-6200.
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Pilar Tijerina & Rick Russell. 2013. Biophysics of RNA Folding. Biophysics of RNA Folding 205 230 .
P K Padmanabhan, M Samant, S Cloutier, M J Simard & B Papadopoulou. (2012) Apoptosis-like programmed cell death induces antisense ribosomal RNA (rRNA) fragmentation and rRNA degradation in Leishmania. Cell Death & Differentiation 19:12, pages 1972-1982.
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Anna L. Mallam, Mark Del Campo, Benjamin Gilman, David J. Sidote & Alan M. Lambowitz. (2012) Structural basis for RNA-duplex recognition and unwinding by the DEAD-box helicase Mss116p. Nature 490:7418, pages 121-125.
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Olga Fedorova & Anna Marie Pyle. (2012) The Brace for a Growing Scaffold: Mss116 Protein Promotes RNA Folding by Stabilizing an Early Assembly Intermediate. Journal of Molecular Biology 422:3, pages 347-365.
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Arnon Henn, Michael J. BradleyEnrique M. De La Cruz. (2012) ATP Utilization and RNA Conformational Rearrangement by DEAD-Box Proteins. Annual Review of Biophysics 41:1, pages 247-267.
Crossref
Angela Hilliker. 2012. RNA helicases. RNA helicases 323 346 .
Jeffrey P. Potratz & Rick Russell. 2012. RNA helicases. RNA helicases 111 130 .
Michael J. Bradley & Enrique M. De La Cruz. 2012. RNA helicases. RNA helicases 29 63 .
Rajesh C. Miranda. 2012. Epigenetics in Human Disease. Epigenetics in Human Disease 503 518 .
Selma Sinan, Xiaoyan Yuan & Rick Russell. (2011) The Azoarcus Group I Intron Ribozyme Misfolds and Is Accelerated for Refolding by ATP-dependent RNA Chaperone Proteins. Journal of Biological Chemistry 286:43, pages 37304-37312.
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Anna Marie Pyle. (2011) RNA helicases and remodeling proteins. Current Opinion in Chemical Biology 15:5, pages 636-642.
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Jeffrey P. Potratz, Mark Del Campo, Rachel Z. Wolf, Alan M. Lambowitz & Rick Russell. (2011) ATP-Dependent Roles of the DEAD-Box Protein Mss116p in Group II Intron Splicing In Vitro and In Vivo. Journal of Molecular Biology 411:3, pages 661-679.
Crossref
Wenxiang Cao, Maria Magdalena Coman, Steve Ding, Arnon Henn, Elizabeth R. Middleton, Michael J. Bradley, Elizabeth Rhoades, David D. Hackney, Anna Marie Pyle & Enrique M. De La Cruz. (2011) Mechanism of Mss116 ATPase Reveals Functional Diversity of DEAD-Box Proteins. Journal of Molecular Biology 409:3, pages 399-414.
Crossref
Martina Doetsch, Renée Schroeder & Boris Fürtig. (2011) Transient RNA-protein interactions in RNA folding. FEBS Journal 278:10, pages 1634-1642.
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