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Articles

Identification and expression analysis of capsaicin biosynthesis pathway genes at genome level in Capsicum chinense

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Pages 232-244 | Received 22 Sep 2021, Accepted 26 Apr 2022, Published online: 31 May 2022

Figures & data

Figure 1. Chromosomal locations and duplications of genes associated with capsaicin synthesis on the Capsicum chinense chromosomes. Note: In the figure, the chromosome number is shown at the top of each bar. The gene clusters are indicated by black lines.

Figure 1. Chromosomal locations and duplications of genes associated with capsaicin synthesis on the Capsicum chinense chromosomes. Note: In the figure, the chromosome number is shown at the top of each bar. The gene clusters are indicated by black lines.

Figure 2. Structural analysis of the capsaicin metabolic genes: (A) NJ phylogenetic tree of capsaicin metabolic proteins; (B) Exon-intron structure of capsaicin metabolic genes. Note: In the figure, yellow indicates the exons; black indicates the introns.

Figure 2. Structural analysis of the capsaicin metabolic genes: (A) NJ phylogenetic tree of capsaicin metabolic proteins; (B) Exon-intron structure of capsaicin metabolic genes. Note: In the figure, yellow indicates the exons; black indicates the introns.

Table 1. Gene names and their corresponding GenBank numbers.

Table 2. Capsaicin metabolic genes in Capsicum chinense.

Figure 3. Promoter cis-regulatory element prediction of genes associated with capsaicin synthesis. Note: Different colors represent different cis elements.

Figure 3. Promoter cis-regulatory element prediction of genes associated with capsaicin synthesis. Note: Different colors represent different cis elements.

Figure 5. Expression heatmaps of the capsaicin metabolic genes in total fruits [Citation38] and placental tissue in Capsicum chinense L. [Citation12] during the fruit development stage based on the RNA-Seq data. Note: These data were normalized to a row scale. Days after pollination (DAP); Days post-anthesis (DPA); Fruit-Early (20DPA); Fruit-Breaker (30-45DPA); Fruit-Mature (45-60DPA).

Figure 5. Expression heatmaps of the capsaicin metabolic genes in total fruits [Citation38] and placental tissue in Capsicum chinense L. [Citation12] during the fruit development stage based on the RNA-Seq data. Note: These data were normalized to a row scale. Days after pollination (DAP); Days post-anthesis (DPA); Fruit-Early (20DPA); Fruit-Breaker (30-45DPA); Fruit-Mature (45-60DPA).
Supplemental material

Supplemental Material

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Data availability statement

The data that support the findings of this study are available from the corresponding author, [SHC], upon reasonable request.