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Research Article

Comparison of transcriptome profiles of nucleated red blood cells in cord blood between preterm and full-term neonates

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Figures & data

Figure 1. The results of hemoglobin electrophoresis and the purity of isolated NRBCs. (a) The average HbA and HbF levels of full-term female neonates and preterm female neonates. (b) Flow cytometry analysis of MNCs. (c) Flow cytometry analysis of isolated NRBCs, in which Q3 corresponds to CD71+ CD45 cells. (c) Wright’s staining (100×). (d) Brilliant cresyl blue staining of NRBCs (100×).

Figure 1. The results of hemoglobin electrophoresis and the purity of isolated NRBCs. (a) The average HbA and HbF levels of full-term female neonates and preterm female neonates. (b) Flow cytometry analysis of MNCs. (c) Flow cytometry analysis of isolated NRBCs, in which Q3 corresponds to CD71+ CD45− cells. (c) Wright’s staining (100×). (d) Brilliant cresyl blue staining of NRBCs (100×).

Figure 2. Differentially expressed transcripts between preterm and full-term neonates. (a) Volcano map of all miRNAs in the preterm and full-term groups. (b) Hierarchical clustering heat map of 79 differentially expressed miRNAs. (c, d) Differential expression profiles of known mRNA and lncRNA in the FF-vs-PF comparison.

Figure 2. Differentially expressed transcripts between preterm and full-term neonates. (a) Volcano map of all miRNAs in the preterm and full-term groups. (b) Hierarchical clustering heat map of 79 differentially expressed miRNAs. (c, d) Differential expression profiles of known mRNA and lncRNA in the FF-vs-PF comparison.

Figure 3. Comparative analysis of our sequencing data and published datasets. Warm colors (oranges/yellows) represent upregulation; cool colors (blues/greens) represent downregulation.

Figure 3. Comparative analysis of our sequencing data and published datasets. Warm colors (oranges/yellows) represent upregulation; cool colors (blues/greens) represent downregulation.

Figure 4. GO and KEGG enrichment analysis of differentially expressed mRNA. (a) GO enrichment analysis. The X-axis represents the number of genes. (b) KEGG enrichment analysis.

Figure 4. GO and KEGG enrichment analysis of differentially expressed mRNA. (a) GO enrichment analysis. The X-axis represents the number of genes. (b) KEGG enrichment analysis.

Figure 5. RT-qPCR-based detection of mRNA and lncRNA expression. (a) The expression levels of six upregulated genes in the full-term group. (b) The expression of three Fanconi anemia pathway-related genes. (c) The expression of two downregulated genes. (d) The expression of two miRNAs. (e)The expression of BCL11A based on sex segregation. PM: preterm male; PF: preterm female; FM: full-term male; FF: full-term female. The ordinate represents the fold change in relative quantity. Values shown are the mean ± SD (ns: P  ≥ 0.05; *P  < 0.05, **P  < 0.01, ***P  < 0.001; ****P  < 0.0001).

Figure 5. RT-qPCR-based detection of mRNA and lncRNA expression. (a) The expression levels of six upregulated genes in the full-term group. (b) The expression of three Fanconi anemia pathway-related genes. (c) The expression of two downregulated genes. (d) The expression of two miRNAs. (e)The expression of BCL11A based on sex segregation. PM: preterm male; PF: preterm female; FM: full-term male; FF: full-term female. The ordinate represents the fold change in relative quantity. Values shown are the mean ± SD (ns: P  ≥ 0.05; *P  < 0.05, **P  < 0.01, ***P  < 0.001; ****P  < 0.0001).

Figure 6. Hub genes of differentially expressed transcription factors and the H19-related lncRNA/miRNA/mRNA network. (a) Hub genes. Red represents a high connection degree and yellow represents a low connection degree. (b) The H19-related network. Red represents lncRNAs, blue represent miRNAs, orange represent genes, and yellow represents globin genes. Dotted lines denote interactions.

Figure 6. Hub genes of differentially expressed transcription factors and the H19-related lncRNA/miRNA/mRNA network. (a) Hub genes. Red represents a high connection degree and yellow represents a low connection degree. (b) The H19-related network. Red represents lncRNAs, blue represent miRNAs, orange represent genes, and yellow represents globin genes. Dotted lines denote interactions.
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