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Research Article

Complete genome analysis of Vibrio mimicus strain SCCF01, a highly virulent isolate from the freshwater catfish

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Pages 23-31 | Received 11 Jul 2019, Accepted 14 Oct 2019, Published online: 28 Dec 2019

Figures & data

Figure 1. Circular graph of V. mimicus strain SCCF01 genome. Rings from the outermost to the center: (1) scale marks of the genome; (2) protein-coding genes on the forward strand; (3) protein-coding genes on the reverse strand; (4) tRNA (black) and rRNA (red) genes on the forward strand; (5) tRNA (black) and rRNA (red) genes on the reverse strand; (6) GC content; (7) GC skew. Protein-coding genes are color-coded according to their COG categories

Figure 1. Circular graph of V. mimicus strain SCCF01 genome. Rings from the outermost to the center: (1) scale marks of the genome; (2) protein-coding genes on the forward strand; (3) protein-coding genes on the reverse strand; (4) tRNA (black) and rRNA (red) genes on the forward strand; (5) tRNA (black) and rRNA (red) genes on the reverse strand; (6) GC content; (7) GC skew. Protein-coding genes are color-coded according to their COG categories

Table 1. The results of sequencing and assembly

Table 2. Virulence factors of V. mimicus strain SCCF01

Table 3. Repeat elements prediction in V. mimicus strain SCCF01

Figure 2. Genomic islands (GI) prediction in V. mimicus SCCF01 by IslandViewer; A: Chromosome I (Chr.I), Chromosome II (Chr.II)

Figure 2. Genomic islands (GI) prediction in V. mimicus SCCF01 by IslandViewer; A: Chromosome I (Chr.I), Chromosome II (Chr.II)

Figure 3. Schematic diagram of prophage organization

Figure 3. Schematic diagram of prophage organization

Figure 4. Linear pairwise comparison of the SCCF01 strain genome

Note: the upper axis and lower axis are standard strain genome, the medial axis is SCCF01 strain genome, sense strand is shown in the yellow box, antisense strand is shown in blue line, color depth in the box shows the similarity of alignment, full-fit indicates 100% similarity.
Figure 4. Linear pairwise comparison of the SCCF01 strain genome

Table 4. The result of gene family analysis

Figure 5. Phylogenetic tree of Vibrio mimicus based on locally collinear block searching

Figure 5. Phylogenetic tree of Vibrio mimicus based on locally collinear block searching
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