Multiple substrate-binding sites are retained in cytochrome P450 3A4 mutants with decreased cooperativity

Abstract

1. The basis of decreased cooperativity in substrate binding in the cytochrome P450 3A4 mutants F213W, F304W, and L211F/D214E was studied with fluorescence resonance energy transfer and absorbance spectroscopy.

2. Although in the wild type enzyme, the absorbance changes reflecting the interactions with 1-pyrenebutanol exhibit a Hill coefficient (n_H) around 1.7 (S₅₀ = 11.7 µM), the mutants showed no cooperativity (n_H ≤ 1.1) with unchanged S₅₀ values.

3. Contrary to the premise that the mutants lack one of the two binding sites, the mutants exhibited at least two substrate binding events. The high-affinity interaction is characterized by a dissociation constant (K_D) ≤ 1.0 µM, whereas the K_D of the second binding has the same magnitude as the S₅₀.

4. Theoretical analysis of a two-step binding model suggests that n_H values may vary from 1.1 to 2.2 depending on the amplitude of the spin shift caused by the first binding event.

5. Alteration of cooperativity in the mutants is caused by a partial displacement of the “spin-shifting” step. Although in the wild type the spin shift occurs in the ternary complex only, the mutants exhibit some spin shift on binding of the first substrate molecule.

Keywords::

• P450 allostery
• fluorescent resonance energy transfer
• α-naphthoflavone
• 1-pyrenebutanol
• spin shift
• phenylalanine cluster