Attenuation of Type IV pili activity by natural products

Abstract

The virulence factor Type IV pili (T4P) are surface appendages used by the opportunistic pathogen Pseudomonas aeruginosa for twitching motility and adhesion in the environment and during infection. Additionally, the use of these appendages by P. aeruginosa for biofilm formation increases its virulence and drug resistance. Therefore, attenuation of the activity of T4P would be desirable to control P. aeruginosa infections. Here, a computational approach has been pursued to screen natural products that can be used for this purpose. PilB, the elongation ATPase of the T4P machinery in P. aeruginosa, has been selected as the target subunit and virtual screening of FDA-approved drugs has been conducted. Screening identified two natural compounds, ergoloid and irinotecan, as potential candidates for inhibiting this T4P-associated ATPase in P. aeruginosa. These candidate compounds underwent further rigorous evaluation through molecular dynamics (MD) simulations and then through in vitro twitching motility and biofilm inhibition assays. Notably, ergoloid emerged as a particularly promising candidate for weakening the T4P activity by inhibiting the elongation ATPases associated with T4P. This repurposing study paves the way for the timely discovery of antivirulence drugs as an alternative to classical antibiotic treatments to help combat infections caused by P. aeruginosa and related pathogens.

Communicated by Ramaswamy H. Sarma

Keywords:

• Antivirulence
• drug discovery
• molecular docking
• molecular dynamics simulations
• PilB
• Type IV pili
• virtual library screening
• twitching motility
• biofilm inhibition

Acknowledgments

Support from TUBITAK 120M225 is kindly acknowledged. AO acknowledges YOK 100/2000. EB acknowledges BIDEB 2211-A. KY acknowledges BIDEB 2209-A and 2247-C.

Disclosure statement

No potential conflict of interest was reported by the author(s).

Additional information

Funding

This work was supported by TUBITAK 120M225.