Structural, functional, molecular docking analysis of a hypothetical protein from Talaromyces marneffei and its molecular dynamic simulation: an in-silico approach

Abstract

Telaromyces marneffei (formerly Penicillium marneffei) is an endemic pathogenic fungus in Southern China and Southeast Asia. It can cause disease in patients with travel-related exposure to this organism and high morbidity and mortality in acquired immune deficiency syndrome (AIDS). In this study, we analyzed the structure and function of a hypothetical protein from T. marneffei using several bioinformatics tools and servers to unveil novel pharmacological targets and design a peptide vaccine against specific epitopes. A total of seven functional epitopes were screened on the protein, and ‘STGVDMWSV’ was the most antigenic, non-allergenic and non-toxic. Molecular docking showed stronger affinity between the CTL epitope ‘STGVDMWSV’ and the MHC I allele HLA-A*02:01, a higher docking score −234.98 kcal/mol, revealed stable interactions during a 100 ns molecular dynamic simulation. Overall, the results of this study revealed that this hypothetical protein is crucial for comprehending biochemical, physiological pathways and identifying novel therapeutic targets for human health.

Communicated by Ramaswamy H. Sarma

Keywords:

• Computational biology
• hypothetical protein
• epitope based vaccine
• therapeutic target
• molecular docking
• molecular dynamics simulation

Disclosure statement

There is no potential conflict of interest was reported by the authors.

Author contributions

M.M.R.M, S.S.S, M.A.M and M.A.I wrote and edited the manuscript. M.M.R.M and S.S.S performed computational analysis and generated figures, and tables. M.M.R.M. and M.A.I perceived and designed the study.

Correction Statement

This article has been corrected with minor changes. These changes do not impact the academic content of the article.

Additional information

Funding

The authors reported there is no funding associated in this article.