988
Views
10
CrossRef citations to date
0
Altmetric
A Part Special Issue: Advances in the Application of Bio and Nanotechnology in Veterinary Science

Genotyping methods and molecular epidemiology of Mycobacterium avium subsp. paratuberculosis (MAP)Footnote

, , &
Pages 258-264 | Received 28 Jun 2018, Accepted 02 Aug 2018, Published online: 03 May 2019

References

  • W.C.LosingerEconomic impact of reduced milk production associated with Johne's disease on dairy operations in the USAJ Dairy Res7242005425432
  • M.MachackovaP.SvastovaJ.LamkaI.ParmovaV.LiskaJ.SmolikParatuberculosis in farmed and free-living wild ruminants in the Czech Republic (1999–2001)Vet Microbiol10142004225234
  • K.FechnerK.Matz-RensingK.LampeF.J.KaupC.P.CzernyJ.SchaferDetection of Mycobacterium avium subsp. paratuberculosis in non-human primatesJ Med Primatol2017
  • M.FlorouL.LeontidesP.KostoulasC.BillinisM.SofiaI.KyriazakisIsolation of Mycobacterium avium subspecies paratuberculosis from non-ruminant wildlife living in the sheds and on the pastures of Greek sheep and goatsEpidemiol Infect13652008644652
  • M.A.MillerS.C.DaveyL.S.VAn HeldenF.KettnerS.M.WeltanR.LastParatuberculosis in a domestic dog in South AfricaJ S Afr Vet Assoc882017
  • M.V.PalmerW.C.StoffregenJ.G.CarpenterJ.R.StabelIsolation of Mycobacterium avium subsp. paratuberculosis (MAP) from feral cats on a dairy farm with MAP-infected cattleJ Wildl Dis4132005629635
  • E.A.RaizmanS.J.WellsP.A.JordanG.D.DelGiudiceR.R.BeyMycobacterium avium subsp. paratuberculosis from free-ranging deer and rabbits surrounding Minnesota dairy herdsCan J Vet Res69120053238
  • P.MünsterK.FechnerI.VölkelA.von BuchholzC.P.CzernyDistribution of Mycobacterium avium ssp. paratuberculosis in a German zoological garden determined by IS900 semi-nested and quantitative real-time pcrVet Microbiol1631–22013116123
  • M.KopecnaS.OndrusI.LiterakJ.KlimesA.HorvathovaM.MoravkovaDetection of Mycobacterium avium subsp. paratuberculosis in two brown bears in the central European CarpathiansJ Wildl Dis4232006691695
  • R.J.ChiodiniH.J.Van KruiningenW.R.ThayerR.S.MerkalJ.A.CoutuPossible role of mycobacteria in inflammatory bowel disease. I. An unclassified Mycobacterium species isolated from patients with Crohn's diseaseDig Dis Sci2912198410731079
  • L.A.SechiC.T.DowMycobacterium avium ss. Paratuberculosis zoonosis – the hundred year war – beyond Crohn's diseaseFront Immunol6201596
  • A.FawzyA.PrinceA.A.HassanA.FayedM.ZschöckM.NagaEpidemiological studies on Johne’s disease in ruminants and Crohn’s disease in humans in EgyptInt J Vet Sci Med1220137986
  • B.FoxmanL.RileyMolecular epidemiology: Focus on infectionAm J Epidemiol15312200111351141
  • D.M.CollinsD.M.GabricG.W.De LisleIdentification of two groups of Mycobacterium paratuberculosis strains by restriction endonuclease analysis and DNA hybridizationJ Clin Microbiol282199015911596
  • K.StevensonV.M.HughesLd.JuanN.F.InglisF.WrightJ.M.SharpMolecular characterization of pigmented and nonpigmented isolates of Mycobacterium avium subsp. paratuberculosisJ Clin Microbiol405200217981804
  • Ld.JuanA.MateosL.DomínguezJ.M.SharpK.StevensonGenetic diversity of Mycobacterium avium subspecies paratuberculosis isolates from goats detected by pulsed-field gel electrophoresisVet Microbiol1063–42005249257
  • J.M.BryantV.C.ThibaultD.G.SmithJ.McLuckieI.HeronI.A.SevillaPhylogenomic exploration of the relationships between strains of Mycobacterium avium subspecies paratuberculosisBMC Genomics17201679
  • R.J.WhittingtonI.B.MarshR.H.WhitlockTyping of is 1311 polymorphisms confirms that bison (Bison bison) with paratuberculosis in Montana are infected with a strain of Mycobacterium avium subsp. paratuberculosis distinct from that occurring in cattle and other domesticated livestockMol Cell Probes1532001139145
  • I.SevillaS.V.SinghJ.M.GarridoG.AdurizS.RodriguezM.V.GeijoMolecular typing of Mycobacterium avium subspecies paratuberculosis strains from different hosts and regionsRev Sci Technol243200510611066
  • J.S.SohalS.V.SinghP.K.SinghA.V.SinghN.KumarA new marker is1311 l2 PCR-REA for identification of 'Indian bison' type Mycobacterium avium subspecies paratuberculosisIndian J Biotechnol122013204207
  • P.ScheiblG.F.GerlachDifferentiation of Mycobacterium paratuberculosis isolates by rDNA-spacer analysis and random amplified polymorphic DNA patternsVet Microbiol572–31997151158
  • A.S.MotiwalaM.StrotherA.AmonsinB.ByrumS.A.NaserJ.R.StabelMolecular epidemiology of Mycobacterium avium subsp. paratuberculosis: evidence for limited strain diversity, strain sharing, and identification of unique targets for diagnosisJ Clin Microbiol415200320152026
  • M.M.FeizabadiI.D.RobertsonA.HopeD.V.CousinsD.J.HampsonDifferentiation of Australian isolates of Mycobacterium paratuberculosis using pulsed-field gel electrophoresisAust Vet J75121997887889
  • T.J.BullK.Sidi-BoumedineE.J.McMinnK.StevensonR.PickupJ.Hermon-TaylorMycobacterial interspersed repetitive units (MIRU) differentiate Mycobacterium avium subspecies paratuberculosis from other species of the Mycobacterium avium complexMol Cell Probes1742003157164
  • A.AmonsinL.L.LiQ.ZhangJ.P.BannantineA.S.MotiwalaS.SreevatsanMultilocus short sequence repeat sequencing approach for differentiating among Mycobacterium avium subsp. paratuberculosis strainsJ Clin Microbiol424200416941702
  • C.Y.TurenneM.SemretD.V.CousinsD.M.CollinsM.A.BehrSequencing of hsp65 distinguishes among subsets of the Mycobacterium avium complexJ Clin Microbiol4422006433440
  • L.LiJ.P.BannantineQ.ZhangA.AmonsinB.J.MayD.AltThe complete genome sequence of Mycobacterium avium subspecies paratuberculosisProc Natl Acad Sci USA1023520051234412349
  • B.R.CharltonA.A.BickfordR.P.ChinR.L.WalkerRandomly amplified polymorphic DNA (RAPD) analysis of Mycoplasma gallisepticum isolates from turkeys from the central valley of CaliforniaJ Vet Diagn Invest1151999408415
  • J.P.SinghR.VermaP.ChaudhuriRandom amplified polymorphic DNA (RAPD) analysis of Mycobacterium tuberculosis strains in IndiaJ Vet Sci722006181187
  • M.SchrenzelM.NicolasC.WitteR.PapendickT.TuckerL.KeenerMolecular epidemiology of Mycobacterium avium subsp. avium and Mycobacterium intracellulare in captive birdsVet Microbiol1261–32008122131
  • S.R.PillaiB.M.JayaraoJ.D.GummoE.C.HueD.TiwariJ.R.StabelIdentification and sub-typing of Mycobacterium avium subsp. paratuberculosis and Mycobacterium avium subsp. avium by randomly amplified polymorphic DNAVet Microbiol7932001275284
  • R.J.WhittingtonA.F.HopeD.J.MarshallC.A.TaragelI.MarshMolecular epidemiology of Mycobacterium avium subsp. paratuberculosis: IS900 restriction fragment length polymorphism and IS1311 polymorphism analyses of isolates from animals and a human in AustraliaJ Clin Microbiol389200032403248
  • B.O'SheaS.KhareK.BlissP.KleinT.A.FichtL.G.AdamsAmplified fragment length polymorphism reveals genomic variability among Mycobacterium avium subsp. paratuberculosis isolatesJ Clin Microbiol428200436003606
  • B.O'SheaS.KhareP.KleinA.RousselL.G.AdamsT.A.FichtAmplified fragment length polymorphism reveals specific epigenetic distinctions between Mycobacterium avium subspecies paratuberculosis isolates of various isolation typesJ Clin Microbiol496201122222229
  • S.BenschM.AkessonTen years of aflp in ecology and evolution: why so few animals?Mol Ecol1410200528992914
  • D.C.SchwartzC.R.CantorSeparation of yeast chromosome-sized DNAs by pulsed field gradient gel electrophoresisCell37119846775
  • D.MacCannellBacterial strain typingClin Lab Med3332013629650
  • R.V.GoeringPulsed field gel electrophoresis: a review of application and interpretation in the molecular epidemiology of infectious diseaseInfect Genet Evol1072010866875
  • I.SevillaJ.M.GarridoM.GeijoR.A.JustePulsed-field gel electrophoresis profile homogeneity of Mycobacterium avium subsp. paratuberculosis isolates from cattle and heterogeneity of those from sheep and goatsBMC Microbiol7200718
  • I.SevillaL.LiA.AmonsinJ.M.GarridoM.V.GeijoV.KapurComparative analysis of Mycobacterium avium subsp. paratuberculosis isolates from cattle, sheep and goats by short sequence repeat and pulsed-field gel electrophoresis typingBMC Microbiol82008204
  • Z.Dimareli-MalliK.StevensonK.SarrisK.SossidouStudy of microbiological and molecular typing aspects of paratuberculosis in sheep and goats in Northern GreeceTransbound Emerg Dis566–72009285290
  • K.StevensonJ.AlvarezD.BakkerF.BietL.D.JuanS.DenhamOccurrence of Mycobacterium avium subspecies paratuberculosis across host species and European countries with evidence for transmission between wildlife and domestic ruminantsBMC Microbiol92009212
  • I.PavlikA.HorvathovaL.DvorskaJ.BartlP.SvastovaR.du MaineStandardisation of restriction fragment length polymorphism analysis for Mycobacterium avium subspecies paratuberculosisJ Microbiol Methods381999155167
  • P.MöbiusG.LuyvenH.HotzelH.KöhlerHigh genetic diversity among Mycobacterium avium subsp. paratuberculosis strains from german cattle herds shown by combination of IS900 restriction fragment length polymorphism analysis and mycobacterial interspersed repetitive unit-variable-number tandem-repeat typingJ Clin Microbiol4632008972981
  • H.GrundmannS.HoriG.TannerDetermining confidence intervals when measuring genetic diversity and the discriminatory abilities of typing methods for microorganismsJ Clin Microbiol3911200141904192
  • L.Abdolmohammadi KhiavM.HaghkhahK.TadayonN.MosavariGenotyping analysis of bovine, ovine, and caprine paratuberculosis in Iran: an IS900-RFLP studyInt J Mycobacteriol5Suppl. 12016S228
  • I.FritschG.LuyvenH.KöhlerW.LutzP.MöbiusSuspicion of Mycobacterium avium subsp. paratuberculosis transmission between cattle and wild-living red deer (Cervus elaphus) by multitarget genotypingAppl Environ Microbiol784201211321139
  • V.F.SaundersG.J.EamensM.J.TurnerT.M.JessepIdentification of a new RFLP type of Mycobacterium avium subsp. paratuberculosis in epidemiological tracing of bovine Johne’s diseaseAust Vet J812003564566
  • A.S.MotiwalaL.LiV.KapurS.SreevatsanCurrent understanding of the genetic diversity of Mycobacterium avium subsp. paratuberculosisMicrobes Infect85200614061418
  • Z.SunW.LiS.XuH.HuangThe discovery, function and development of the variable number tandem repeats in different Mycobacterium speciesCrit Rev Microbiol4252016738758
  • K.ZhouA.AertsenC.W.MichielsThe role of variable DNA tandem repeats in bacterial adaptationFEMS Microbiol Rev3812014119141
  • A.JansenR.GemayelK.J.VersterpenUnstable microsatellite repeats facilitate rapid evolution of coding and regulatory sequencesGenome Dyn72012108125
  • C.S.ChiouMultilocus variable-number tandem repeat analysis as a molecular tool for subtyping and phylogenetic analysis of bacterial pathogensExpert Rev Mol Diagn10201057
  • A.El-SayedS.NaturN.-E.M.I.AbdouM.SalemA.HassanM.ZschöckGenotyping of Mycobacterium avium field isolates based on repetitive elementsInt J Vet Sci Med1120133642
  • M.SalemS.NaturA.A.El-SayedA.HassanG.BaljerM.ZschöckMolecular characterization of Mycobacterium avium subsp. paratuberculosis field isolates recovered from dairy cattle in GermanyInt J Vet Sci Med1120133035
  • P.SupplyJ.MagdalenaS.HimpensC.LochtIdentification of novel intergenic repetitive units in a mycobacterial two-component system operonMol Microbiol2619979911003
  • E.CastellanosL.D.JuanL.DomínguezA.AranazProgress in molecular typing of Mycobacterium avium subspecies paratuberculosisRes Vet Sci9222012169179
  • P.OverduinL.SchoulsP.RohollA.van der ZandenN.MahmmodA.HerreweghUse of multilocus variable-number tandem-repeat analysis for typing Mycobacterium avium subsp. paratuberculosisJ Clin Microbiol4211200450225028
  • G.BensonTandem repeats finder: a program to analyze DNA sequencesNucl Acids Res271999573580
  • V.C.ThibaultM.GrayonM.L.BoschiroliC.HubbansP.OverduinK.StevensonNew variable-number tandem-repeat markers for typing Mycobacterium avium subsp. paratuberculosis and M. avium strains: comparison with IS900 and IS1245 restriction fragment length polymorphism typingJ Clin Microbiol458200724042410
  • F.BietI.A.SevillaT.CochardL.H.LefrançoisJ.M.GarridoI.HeronInter- and intra-subtype genotypic differences that differentiate Mycobacterium avium subspecies paratuberculosis strainsBMC Microbiol122012264
  • H.GerritsmannG.L.StalderJ.SpergserF.HoelzlA.DeutzA.Kuebber-HeissMultiple strain infections and high genotypic diversity among Mycobacterium avium subsp. paratuberculosis field isolates from diseased wild and domestic ruminant species in the Eastern Alpine region of AustriaInfect Genet Evol212014244251
  • A.GioffréM.Correa MuñozM.F.Alvarado PinedoR.VacaC.MorsellaM.A.FiorentinoMolecular typing of Argentinian Mycobacterium avium subsp. paratuberculosis isolates by multiple-locus variable number-tandem repeat analysisBraz J Microbiol4622015557564
  • Z.RónaiÁ.CsivincsikM.GyuraneczZ.KreizingerÁ.DánS.JánosiMolecular analysis and MIRU-VNTR typing of Mycobacterium avium subsp. paratuberculosis strains from various sourcesJ Appl Microbiol11822015275283
  • B.R.ImperialeR.D.MoyanoA.B.Di GiulioM.A.RomeroM.F.Alvarado PinedoM.P.SantangeloGenetic diversity of Mycobacterium avium complex strains isolated in Argentina by MIRU-VNTREpidemiol Infect1457201713821391
  • Md.KruijfO.N.LesniakD.YearsleyE.RamovicA.CoffeyJ.O'MahonyLow genetic diversity of bovine Mycobacterium avium subspecies paratuberculosis isolates detected by MIRU-VNTR genotypingVet Microbiol2032017280285
  • E.CastellanosB.RomeroS.RodríguezLd.JuanJ.BezosA.MateosMolecular characterization of Mycobacterium avium subspecies paratuberculosis types II and III isolates by a combination of MIRU-VNTR lociVet Microbiol1441–22010118126
  • C.AhlstromH.W.BarkemaK.StevensonR.N.ZadoksR.BiekR.KaoLimitations of variable number of tandem repeat typing identified through whole genome sequencing of Mycobacterium avium subsp. paratuberculosis on a national and herd levelBMC Genomics162015161
  • A.H.GhadialiM.StrotherS.A.NaserE.J.ManningS.SreevatsanMycobacterium avium subsp. paratuberculosis strains isolated from Crohn's disease patients and animal species exhibit similar polymorphic locus patternsJ Clin Microbiol4211200453455348
  • A.S.MotiwalaA.AmonsinM.StrotherE.J.B.ManningV.KapurS.SreevatsanMolecular epidemiology of Mycobacterium avium subsp. paratuberculosis isolates recovered from wild animal speciesJ Clin Microbiol424200417031712
  • A.S.MotiwalaM.StrotherN.E.TheusR.W.StichB.ByrumW.P.ShulawRapid detection and typing of strains of Mycobacterium avium subsp. paratuberculosis from broth culturesJ Clin Microbiol435200521112117
  • A.K.PradhanR.M.MitchellA.J.KramerM.J.ZurakowskiT.L.FyockR.H.WhitlockMolecular epidemiology of Mycobacterium avium subsp. paratuberculosis in a longitudinal study of three dairy herdsJ Clin Microbiol4932011893901
  • N.B.HarrisJ.B.PayeurV.KapurS.SreevatsanShort-sequence-repeat analysis of Mycobacterium avium subsp. paratuberculosis and Mycobacterium avium subsp. avium isolates collected from animals throughout the United States reveals both stability of loci and extensive diversityJ Clin Microbiol448200629702973
  • N.KasnitzH.KöhlerM.WeigoldtG.F.GerlachP.MöbiusStability of genotyping target sequences of Mycobacterium avium subsp. paratuberculosis upon cultivation on different media, in vitro- and in vivo passage, and natural infectionVet Microbiol1673–42013573583
  • C.AhlstromH.W.BarkemaJ.D.BuckImproved short-sequence-repeat genotyping of Mycobacterium avium subsp. paratuberculosis by using matrix-assisted laser desorption ionization-time of flight mass spectrometryAppl Environ Microbiol8022014534539
  • M.P.PodderS.E.BanfieldG.P.KeefeH.G.WhitneyK.TahlanTyping of Mycobacterium avium subspecies paratuberculosis isolates from Newfoundland using fragment analysisPLoS One1042015 e0126071
  • I.ComasS.HomolkaS.NiemannS.GagneuxGenotyping of genetically monomorphic bacteria: DNA sequencing in Mycobacterium tuberculosis highlights the limitations of current methodologiesPLoS One4112009 e7815
  • A.El-SayedA.A.HassanS.NatourA.AbdulmawjoodM.BülteW.WolterEvaluation of three molecular methods of repetitive element loci for differentiation of Mycobacterium avium subsp. paratuberculosis (MAP)J Microbiol4732009253259
  • P.E.DouarreW.CashmanJ.BuckleyA.CoffeyJ.O'MahonyMolecular characterization of Mycobacterium avium subsp. paratuberculosis using multi-locus short sequence repeat (MLSSR) and mycobacterial interspersed repetitive units-variable number tandem repeat (MIRU-VNTR) typing methodsVet Microbiol1493–42011482487
  • J.A.Fernández-SilvaA.AbdulmawjoodÖ.AkinedenM.BülteGenotypes of Mycobacterium avium subsp. paratuberculosis from South American countries determined by two methods based on genomic repetitive sequencesTrop Anim Health Prod446201211231126
  • J.A.Fernández-SilvaA.AbdulmawjoodÖ.AkinedenK.DrägerW.KlawonnM.BülteMolecular epidemiology of Mycobacterium avium subsp. paratuberculosis at a regional scale in GermanyRes Vet Sci9322012776782
  • J.B.OkuniC.I.DovasP.LoukopoulosI.G.BouzalasD.P.KateeteM.L.JolobaIsolation of Mycobacterium avium subspecies paratuberculosis from Ugandan cattle and strain differentiation using optimised DNA typing techniquesBMC Vet Res8201299
  • J.S.SohalJ.ArsenaultO.LabrecqueJ.-H.FairbrotherJ.-P.RoyG.FecteauGenetic structure of Mycobacterium avium subsp. paratuberculosis population in cattle herds in quebec as revealed by using a combination of multilocus genomic analysesJ Clin Microbiol528201427642775
  • P.R.HunterM.A.GastonNumerical index of the discriminatory ability of typing systems: an application of simpson's index of diversityJ Clin Microbiol2611198824652466
  • E.CastellanosA.AranazB.RomeroLd.JuanJ.AlvarezJ.BezosPolymorphisms in gyra and gyrb genes among Mycobacterium avium subsp. paratuberculosis type I, II, and III isolatesJ Clin Microbiol4510200734393442
  • I.B.MarshR.J.WhittingtonGenomic diversity in Mycobacterium avium: single nucleotide polymorphisms between the S and C strains of M. avium subsp. paratuberculosis and with M. a. aviumMol Cell Probes21120076675
  • T.A.GriffithsK.RiouxJ.De BuckSequence polymorphisms in a surface PPE protein distinguish types I, II, and III of Mycobacterium avium subsp. paratuberculosisJ Clin Microbiol464200812071212
  • E.CastellanosA.AranazL.de JuanJ.AlvarezS.RodriguezB.RomeroSingle nucleotide polymorphisms in the IS900 sequence of Mycobacterium avium subsp. paratuberculosis are strain type specificJ Clin Microbiol477200922602264
  • M.GastaldelliE.StefaniA.A.LettiniPozzato N. Multiplexed typing of Mycobacterium avium subsp. paratuberculosis types I, II, and III by luminex xmap suspension arrayJ Clin Microbiol4912011389391
  • J.W.WynneT.J.BullT.SeemannD.M.BulachJ.WagnerC.D.KirkwoodExploring the zoonotic potential of Mycobacterium avium subspecies paratuberculosis through comparative genomicsPLoS One672011 e22171
  • J.W.WynneC.BellerV.BoydB.FrancisJ.GwozdzM.CarajiasSNP genotyping of animal and human derived isolates of Mycobacterium avium subsp. paratuberculosisVet Microbiol1723–42014479485
  • C.AhlstromH.W.BarkemaK.StevensonR.N.ZadoksR.BiekR.KaoGenome-wide diversity and phylogeography of Mycobacterium avium subsp. paratuberculosis in Canadian dairy cattlePLoS One1122016e0149017
  • C.AhlstromH.W.BarkemaJ.De BuckRelative frequency of 4 major strain types of Mycobacterium avium ssp. paratuberculosis in Canadian dairy herds using a novel single nucleotide polymorphism-based polymerase chain reactionJ Dairy Sci9910201682978303
  • C.LeaoR.J.GoldstoneJ.BryantJ.McLuckieJ.InacioD.G.E.Smithsingle nucleotide polymorphism-based assay for genotyping Mycobacterium avium subsp. paratuberculosisJ Clin Microbiol5432016556564
  • J.W.WynneT.SeemannD.M.BulachS.A.CouttsA.M.TalaatW.P.MichalskiResequencing the Mycobacterium avium subsp. paratuberculosis k10 genome: Improved annotation and revised genome sequenceJ Bacteriol19223201063196320
  • A.S.AminC.Y.HsuS.F.DarwishP.GhoshE.M.AbdEl-FatahT.S.BehourEcology and genomic features of infection with Mycobacterium avium subspecies paratuberculosis in EgyptMicrobiol161Pt 42015807818
  • J.P.BannantineL.LiM.MwangiR.CoteJ.A.Raygoza GarayV.KapurComplete genome sequence of Mycobacterium avium subsp. paratuberculosis, isolated from human breast milkGenome Announc2014;2(1).
  • P.MöbiusM.HölzerM.FelderG.NordsiekM.GrothH.KöhlerComprehensive insights in the Mycobacterium avium subsp. paratuberculosis genome using new WGS data of sheep strain JIII-386 from GermanyGenome Biol Evol2015evv154
  • J.P.BannantineC.-W.WuC.HsuS.ZhouD.C.SchwartzD.O.BaylesGenome sequencing of ovine isolates of Mycobacterium avium subspecies paratuberculosis offers insights into host associationBMC Genomics13201289
  • P.GhoshC.HsuE.J.AlyamaniM.M.ShehataM.A.Al-DubaibA.Al-NaeemGenome-wide analysis of the emerging infection with Mycobacterium avium subspecies paratuberculosis in the Arabian camels (Camelus dromedarius)PLoS One722012 e31947
  • J.S.SohalN.SheoranK.NarayanasamyV.BrahmachariS.SinghS.SubodhGenomic analysis of local isolate of Mycobacterium avium subspecies paratuberculosisVet Microbiol1343–42009375382
  • V.J.TimmsK.A.HassanH.M.MitchellB.A.NeilanComparative genomics between human and animal associated subspecies of the Mycobacterium avium complex: a basis for pathogenicityBMC Genomics162015695
  • C.Y.HsuC.W.WuA.M.TalaatGenome-wide sequence variation among Mycobacterium avium subspecies paratuberculosis isolates: a better understanding of Johne's disease transmission dynamicsFront Microbiol22011236
  • I.PavlikL.BejckovaM.PavlasZ.RozsypalovaS.KoskovaCharacterization by restriction endonuclease analysis and DNA hybridization using IS900 of bovine, ovine, caprine and human dependent strains of Mycobacterium paratuberculosis isolated in various localitiesVet Microbiol451995311318
  • D.V.CousinsS.N.WilliamsA.HopeG.J.EamensDNA fingerprinting of Australian isolates of Mycobacterium avium subsp. paratuberculosis using using IS900 RFLPAust Vet J7832000184190
  • P.MobiusG.LuyvenH.HotzelH.KohlerHigh genetic diversity among Mycobacterium avium subsp. paratuberculosis strains from German cattle herds shown by combination of IS900 restriction fragment length polymorphism analysis and mycobacterial interspersed repetitive unit-variable-number tandem-repeat typingJ Clin Microbiol4632008972981
  • K.J.E.van HulzenH.C.M.HeuvenM.NielenJ.HoeboerW.J.SantemaA.P.KoetsDifferent Mycobacterium avium subsp. paratuberculosis MIRU-VNTR patterns coexist within cattle herdsVet Microbiol1482–42011419424
  • F.W.DavidsonC.AhlstromJ.De BuckH.G.WhitneyK.TahlanExamination of Mycobacterium avium subspecies paratuberculosis mixed genotype infections in dairy animals using a whole genome sequencing approachPeerJ42016 e2793
  • N.MarquetouxC.HeuerP.WilsonA.RidlerM.StevensonMerging DNA typing and network analysis to assess the transmission of paratuberculosis between farmsPrev Vet Med1342016113121
  • A.van BelkumP.T.TassiosL.DijkshoornS.HaeggmanB.CooksonN.K.FryGuidelines for the validation and application of typing methods for use in bacterial epidemiologyClin Microbiol Infect13Suppl. 32007146
  • J.P.BannantineL.-L.LiS.SreevatsanV.KapurHow does a mycobacterium change its spots? Applying molecular tools to track diverse strains of Mycobacterium avium subspecies paratuberculosisLett Appl Microbiol5732013165173
  • J.OakeyL.GaveyS.V.SinghJ.PlatellD.WaltisbuhlVariable-number tandem repeats genotyping used to aid and inform management strategies for a bovine Johne's disease incursion in tropical and subtropical AustraliaJ Vet Diagn Invest2652014651657
  • P.C.ClelandD.R.LehmannP.H.PhillipsD.V.CousinsL.A.ReddacliffR.J.WhittingtonA survey to detect the presence of Mycobacterium avium subspecies paratuberculosis in Kangaroo island macropodsVet Microbiol1453–42010339346
  • L.J.ShaughnessyL.A.SmithJ.EvansD.AndersonG.CaldowG.MarionHigh prevalence of paratuberculosis in rabbits is associated with difficulties in controlling the disease in cattleVet J19812013267270