39
Views
3
CrossRef citations to date
0
Altmetric
Reviews

In-silico investigation of genomic regions related to ascites and identifying their pathways in broilers

ORCID Icon &
Pages 193-206 | Received 01 Dec 2018, Accepted 07 Jan 2019, Published online: 23 Sep 2019

References

  • AHMADPANAH, J., HOSSEIN-ZADEH, N.G., SHADPARVAR, A.A. and PAKDEL, A. (2017) Genetic parameters of body weight and ascites in broilers: Effect of different incidence rates of ascites syndrome. British Poultry Science 58: 32–39.
  • AHMADPANAH, J., SHADPARVAR, A.A., GHAVI-HOSSIEN-ZADEH, N. and PAKDEL, A. (2016) Genetic Perspective of Ascites Syndrome in Meat-Type Chickens Iranian Journal of Applied Animal Science 6: 9–14.
  • ALZAHRANI, K., RHOADS, D.D., WIDEMAN, R.F. and ANTHONY, N.B. (2015) Promoter SNPs in the Serotonin Receptor Gene 5HT2B and Their Association with Ascites in Chicken. Ag-genomics meeting.
  • AMIGO2 (2018) Gene Ontology data archive. http://amigo.geneontology.org.
  • ANTHONY, N.B. (2006) Classical and molecular genetic examination of ascites in broiler chickens. University Of Arkansas.
  • AXELSSON, E., WEBSTER, M.T., SMITH, N.G.C., BURT, D.W. and ELLEGREN, H. (2005) Comparison of the chicken and turkey genomes reveals a higher rate of nucleotide divergence on microchromosomes than macrochromosomes. Genome research 15: 120–125.
  • BAMIDEL, O., VAN AS, P. and ELFERINK, M.G. (2012) Molecular characterization of the Leptin Receptor Gene as a candidate gene in the Pulmonary Hypertension Syndrome in Broiler Chickens. Pakistan Journal of Biological Sciences 15: 1187–1190.
  • BURKS, J.R. (2011) Sequence Analysis of the Angiotensin II Type 1 Receptor (AGTR1) Gene for Mutations Contributing to Pulmonary Hypertension in the Chicken (Gallus gallus). The University of Arkansas Undergraduate Research Journal 12: article 9.
  • CATRON, T., MENDIOLA, M.A., SMITH, S.M., BORN, J. and WALKER, M.K. (2001) Hypoxia Regulates Avian Cardiac Arnt and HIF-1a mRNA Expression. Biochemical and Biophysical Research Communications 282: 602–607.
  • CLOSTER, A.M. (2004) The identification and analysis of ascites resistance genes in chicken. Wageningen Universiteit Research centrum.
  • CLOSTER, A.M. (2014) Quantitative genetic analysis of ascites in broilers. Wageningen University.
  • CLOSTER, A.M., ELFERINK, M.G., VAN AS, P., CROOIJMANS, R.P.M.A., GROENEN, M.A.M. and BOVENHUIS, H. (2010) Genome-Wide Association Analysis Identifies Loci That Influence Ascites In broilers. Animal Breeding and Genomics Centre, Wageningen University.
  • CLOSTER, A.M., VAN AS, P., GROENEN, M.A.M., VEREIJKEN, A.L.J., VAN ARENDONK, J.A.M. and BOVENHUIS, H. (2009) Genetic and phenotypic relationships between blood gas parameters and ascites-related traits in broilers. Poultry Science 88: 483–490.
  • DEY, S., KRISHNA, S., ANTHONY, N.B. and RHOADS, D.D. (2017) Further investigation of a quantitative trait locus for ascites on chromosome 9 in broiler chicken lines. Poultry Science 96: 788–797.
  • DRUYAN, S. and CAHANER, A. (2007) Segregation Among Test-Cross Progeny Suggests That Two Complementary Dominant Genes Explain the Difference Between Ascites-Resistant and Ascites-Susceptible Broiler Lines. Poultry Science 86: 2295–2300.
  • EZZULDDIN, T.A. and ALI, N.M. (2012) Detection of some genetic locations related to ascites in the DNA of broiler chickens using microsatellite marker. Iraqi Journal of Veterinary Sciences 26: 365–372.
  • GENE-CARDS 1996–2018 The Human Gene Database. Weizmann Institute of Science.
  • KEGG 1995–2018 Kyoto Encyclopedia of Genes and Genomes. Kanehisa Labs.
  • KREIDER, D.L., ANTHONY, N.B., WHITING, S., ERF, G.F. and HAMAL, K.R. (2010) Single Nucleotide Polymorphisms Associated with Ascites in Susceptible and Resistant Broiler Lines. AAES Research Series 584: 103–106.
  • KRISHNAMOORTHY, S. (2012) Investigation of a Locus on Chromosome 9 for Contributions to Pulmonary Hypertension Syndrome in Broilers. University of Arkansas, Fayetteville.
  • KRISHNAMOORTHY, S., SMITH, C.D., AL-RUBAYE, A.A., ERF, G.F., WIDEMAN, R.F., ANTHONY, N.B. and RHOADS, D.D. (2014) A quantitative trait locus for ascites on chromosome 9 in broiler chicken lines. Poultry Science 93: 307–317.
  • LIU, X. (2009) Association of single nucleotide Polymorphisms with phenotypic production traits in broiler chickens. Thesis submitted to the Faculty of the Graduate School of the University of Maryland.
  • MONCALEANO-VEGA, J., ARIZA, F. and HERNÁNDEZ, A. (2013) Association of NOS3 and HIF1α gene polymorphisms with the susceptibility of broiler chickens to develop hypoxic pulmonary hypertension. Agricultural Sciences 4: 749–755.
  • NAVARRO, P., VISSCHER, P.M., CHATZIPLIS, D., KOERHUIS, A.N. and HALEY, C.S. (2006) Segregation analysis of blood oxygen saturation in broilers suggests a major gene influence on ascites. British Poultry Science 47: 671–684.
  • NCBI (2018) The National Center for Biotechnology Information National Center for Biotechnology Information, U.S. National Library of Medicine.
  • PAKDEL, A., VAN ARENDONK, J.A., VEREIJKEN, A.L. and BOVENHUIS, H. (2005) Genetic parameters of ascites-related traits in broilers: correlations with feed efficiency and carcase traits. British Poultry Science 46: 43–53.
  • RABIE, T.S.K.M., CROOIJMANS, R.P.M.A., BOVENHUIS, H., VEREIJKEN, A.L.J., VEENENDAAL, T., VAN DER POEL, J.J., VAN ARENDONK, J.A.M., PAKDEL, A. and GROENEN, M.A.M. (2005) Genetic mapping of quantitative trait loci affecting susceptibility in chicken to develop pulmonary hypertension syndrome. Animal Genetics 36: 468–476.
  • RHOADS, D., KRISHNAMORTHY, S., AL-RUBYE, A. and ANTHONY, N.B. (2013) Mapping Ascites QTLs In Broilers. International Plant and Animal Genome Conference.
  • ROSMOND, R., CHAGNON, Y.C., HOLM, G.R., CHAGNON, M., PÉRUSSE, L., LINDELL, K., CARLSSON, B., BOUCHARD, C. and RNTORP, P. (2000) Hypertension in Obesity and the Leptin Receptor Gene Locus. The Journal of Clinical Endocrinology and Metabolism 85: 3126–3131.
  • ROWLAND, K. (2013) Identification of Biomarkers Associated with Ascites Incidence in Broilers. University of Arkansas, Fayetteville.
  • SOUBRIER, F., CHUNG, W.K., MACHADO, R., GRÜNIG, E., ALDRED, M., GERACI, M., LOYD, J. E., ELLIOTT, G., TREMBATH, R.C., NEWMAN, J.H. and HUMBERT, M. (2013) Genetics and Genomics of Pulmonary Arterial Hypertension. Journal of the American College of Cardiology 62: D13–21.
  • TARRANT, K.J. (2016) Predicting ascites incidence in simulated altitude-challenge using single nucleotide polymorphisms identified in multi-generational genome wide association studies. PHD Thesis.
  • TARRANT, K.J., DEY, S., KINNEY, R., ANTHONY, N.B. and RHOADS, D.D. (2017) Multi-generational genome wide association studies identify chromosomal regions associated with ascites phenotype. Poultry Science 96: 1544–1552.
  • WANG, Y., LI, H., ZHANG, Y.D., GU, Z., LI, Z.H. and WANG, Q.G. (2006) Analysis on Association of a SNP in the Chicken OBR Gene with Growth and Body Composition Traits. Asian-Australasian Journal of Animal Science 19: 1706–1710.
  • WIDEMAN, R.F., RHOADS, D.D., ERF, G.F. and ANTHONY, N.B. (2013) Pulmonary arterial hypertension (ascites syndrome) in broilers: A review. Poultry Science 92: 64–83.
  • WOOD, K.L., MILLER, M. and DILLON, J.F. (2015) Systematic review of genetic association studies involving histologically confirmed non-alcoholic fatty liver disease. BMJ Open Gastroenterology 2 (1): e000019. doi: 10.1136/bmjgast-2014-000019.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.