Systematics of naviculoid diatoms (Bacillariophyta): A preliminary analysis of protoplast and frustule characters for family and order level classification

References

• Andrews , G.W. 1981 . Achnanthes linkei and the origin of monoraphid diatoms . Bacillaria , 4 : 29 – 40 .
   Google Scholar
• Cleve , P.T. 1894 . Synopsis of the naviculoid diatoms. Part 1 . Kongliga svenska VetenskAkademiens Handlingar , 26 : 1 – 194 .
   Google Scholar
• Cleve , P.T. 1895 . Synopsis of the naviculoid diatoms. Part 2 . Kongliga svenska VetenskAkademiens Handlingar , 27 : 1 – 219 .
   Google Scholar
• Cox , E.J. 1975a . A reappraisal of the diatom genus Amphipleura Kütz. using light and electron microscopy . British Phycological Journal , 10 : 1 – 12 .
   Google Scholar
• Cox , E.J. 1975b . Further studies on the diatom genus Berkeleya Grev . British Phycological Journal , 10 : 202 – 212 .
   Google Scholar
• Cox , E.J. 1976 . Variation in valve structure between species of the diatom genus Cymbella C. A. Ag . Nova Hedwigia , 28 : 427 – 449 .
   Web of Science ®Google Scholar
• Cox , E.J. 1977 . Raphe structure in naviculoid diatoms as revealed by the scanning electron microscope . Nova Hedwigia Beiheft , 54 : 261 – 174 .
   Google Scholar
• Cox , E.J. 1978 . Taxonomic studies on the diatom genus Navicula Bory. Navicula grevillii (C.A. Ag.) Heiberg and N. comoides (Dillwyn) H. & M. Peragallo . Botanical Journal of the Linnean Society , 76 : 127 – 143 .
   Web of Science ®Google Scholar
• Cox , E.J. 1979a . Studies on the diatom genus Navicula Bory. Navicula scopulorum Breb. and a further comment on the genus Berkeleya Grev . British Phycological Journal , 14 : 161 – 174 .
   Web of Science ®Google Scholar
• Cox , E.J. 1979b . Symmetry and valve structure in naviculoid diatoms . Nova Hedwigia Beiheft , 64 : 193 – 206 .
   Google Scholar
• Cox , E.J. The use of chloroplasts and other features of the living cell in the taxonomy of naviculoid diatoms . Proceedings of the 6th Diatom Symposium . 1980 , Budapest. Edited by: Ross , R. pp. 115 – 133 . Koeltz, Koenigstein
   Google Scholar
• Cox , E.J. 1982 . Taxonomic studies on the diatom genus Navicula Bory. IV. Climaconeis Grun., a genus including Okedenia inflexa (Bréb.) Eul. and some members of Navicula sect. johnsoniae sensu Hustedt . British Phycological Journal , 17 : 147 – 168 .
   Web of Science ®Google Scholar
• Cox , E.J. 1987 . Placoneis Mereschkowsky: The re‐evaluation of a diatom genus originally characterized by its chloroplast type . Diatom Research , 2 : 145 – 157 .
   Google Scholar
• Cox , E.J. Variation within the genus Pinnularia Ehrenb.: further evidence for the use of live material in diatom systematics? . Proceedings of the 9th Diatom Symposium . 1986 , Bristol. Edited by: Round , F.E. pp. 437 – 447 . Koenigstein : Biopress Ltd., Bristol & Koeltz Scientific Books .
   Google Scholar
• Cox , E.J. 1988b . Taxonomic studies on the diatom genus Navicula V. The establishment of Parlibellus gen. nov. for some members of Navicula sect. microstigmaticae . Diatom Research , 3 : 9 – 38 .
   Google Scholar
• Cox , E.J. 1990 . “ Biremis ambigua (Cleve) D. G. Mann ‐ an unusual marine epipelic diatom in need of further investigation ” . In Ouvrage dédié à la memoire du Professeur Henri Germain. , Edited by: Ricard , M. 63 – 72 . Koenigstein : Koeltz Scientific Books .
   Google Scholar
• Cox , E.J. 1993 . Diatom systematics ‐ a review of past and present practice and a personal view for future development . Nova Hedwigia Beiheft , 106 : 1 – 20 .
   Google Scholar
• Cox , E.J. 1998 . The identity and typification of some naviculoid diatoms (Bacillariophyta) from freshwater or brackish habitats . Phycologia , 37 : 162 – 175 .
   Web of Science ®Google Scholar
• Cox , E.J. 1999a . Craspedostauros gen. nov., a new diatom genus for some unusual raphid species previously placed in Stauroneis Ehrenberg and Stauronella Mereschkowsky . European Journal of Phycology , 34 : 131 – 147 .
   Web of Science ®Google Scholar
• Cox , E.J. 1999b . Studies on the diatom genus Navicula Bory. VIII. Variation in valve morphology in relation to the generic diagnosis based on Navicula tripunctata (O. F. Müller) Bory . Diatom Research , 14 : 207 – 237 .
   Google Scholar
• Cox , E.J. 2003 . Placoneis Mereschkowsky revisited: towards the resolution of several typification and nomenclatural problems . Botanical Journal of the Linnean Society , 141 : 53 – 83 .
   Web of Science ®Google Scholar
• Cox , E.J. 2004 . Pore occlusions in raphid diatoms ‐ a reassessment of their structure and terminology . Diatom , 20 : 33 – 46 .
   Google Scholar
• Cox , E.J. 2006 . Achnanthes sensu stricto belongs with genera of the Mastogloiales rather than with other monoraphid diatoms (Bacillariophyta) . European Journal of Phycology, , 41 : 67 – 81 .
   Web of Science ®Google Scholar
• Cox , E.J. and Reid , G. Generic relationships within the Naviculineae ‐ a preliminary analysis . Proceedings of the 17th International Diatom Symposium . Ottawa, Canada. Edited by: Poulin , M. pp. 49 – 62 . Bristol : Biopress .
   Google Scholar
• Cox , E.J. and Ross , R. The striae of pennate diatoms . Proceedings of the 6th Symposium on Recent and Fossil Diatoms . Otto Koeltz, Koenigstein. Edited by: Ross , R. pp. 267 – 278 .
   Google Scholar
• Cox , E.J. and Williams , D.M. 2000 . Systematics of naviculoid diatoms: the interrelationships of some taxa with a stauros . European Journal of Phycology , 35 : 273 – 282 .
   Web of Science ®Google Scholar
• Farris , J.S. 1988 . Hennig86, version 1.5 , Published by the author .
   Google Scholar
• Farris , J.S. 1989 . The retention index and the rescaled consistency index . Cladistics , 5 : 417 – 419 .
   PubMed Web of Science ®Google Scholar
• Forti , A. 1912 . Contribuzioni Diatomologiche XII. Metodo di classificazione delle Bacillariee Immobili fondato sull'affinita morfologica dei frustoli e in relazione con l'evoluzione dell'auxospora . Atti del Reale Instituto Veneto di Scienze Lettero ed. Arti. , 71 : 677 – 731 .
   Google Scholar
• Geitler , L. 1932 . Der Formwechsel der pennaten Diatomeen (Kieselalgen). , 226 Jena : Gustav Fischer .
   Google Scholar
• Geitler , L. 1958 . Notizen über Rassenbildung, Fortpflanzung, Formwechsel und morphologische Eigentümlichkeiten bei pennaten Diatomeen . Österreichische Botanische Zeitschrift , 105 : 408 – 442 .
   Google Scholar
• Goloboff , P. 1999 . NONA (NO NAME) ver. 2 Tucuman, , Argentina Published by the author
   Google Scholar
• Hustedt , F. 1933 . “ Die Kieselalgen Deutschlands, Osterreichs und der Schweiz ” . In Dr L. Rabenhorst's Kryptogamenflora von Deutschland, Österreich und der Schweiz, , Vol. 7 , 3 – 4 . 321 – 576 . Leipzig : Akademische Verlagsgesellschaft . Teil 2, Lieferung
   Google Scholar
• Hustedt , F. 1959 . “ Die Kieselalgen Deutschlands, Osterreichs und der Schweiz ” . In Dr L. Rabenhorst's Kryptogamenflora von Deutschland, Österreich und der Schweiz , Vol. 7 , 737 – 845 . Leipzig : Akademische Verlagsgesellschaft . Teil 2, Lieferung 6
   Google Scholar
• Kemp , K. and Paddock , T.B.B. 1989 . Chambers within the valve of Diadema, gen. nov. . Diatom Research , 4 : 39 – 45 .
   Google Scholar
• Kociolek , J.P. and Stoermer , E.F. 1986 . Phylogenetic relationships and classification of monoraphid diatoms based on phen‐etic and cladistic methodologies . Phycologia , 25 : 297 – 303 .
   Web of Science ®Google Scholar
• Kociolek , J.P. and Stoermer , E.F. 1988 . A preliminary investigation of the phylogenetic relationships among the freshwater, apical pore field‐bearing cymbelloid and gomphonemoid diatoms (Bacillariophyceae) . Journal of Phycology , 24 : 377 – 385 .
   Web of Science ®Google Scholar
• Kociolek , J.P. and Stoermer , E.F. 1989 . Phylogenetic relationships and evolutionary history of the diatom genus Gomphoneis . Phycologia , 28 : 438 – 454 .
   Web of Science ®Google Scholar
• Kociolek , J.P. and Stoermer , E.F. 1993 . Freshwater gomphonemoid diatom phylogeny: preliminary results . Hydrobiologia , 269/270 : 31 – 38 .
   Web of Science ®Google Scholar
• Mann , D.G. Sieves and flaps: siliceous minutiae in the pores of raphid diatoms . Proceedings of the 6th Symposium on Recent and Fossil Diatoms . Otto Koeltz, Koenigstein. Edited by: Ross , R. pp. 279 – 300 .
   Google Scholar
• Mann , D.G. 1982a . Structure, life history and systematics of Rhoicosphenia (Bacillariophyta) I. The vegetative cell of Rh. curvata . Journal of Phycology , 18 : 162 – 176 .
   Web of Science ®Google Scholar
• Mann , D.G. 1982b . Structure, life history and systematics of Rhoicosphenia (Bacillariophyta) II. Auxospore formation and perizonium structure of Rh. curvata . Journal of Phycology , 18 : 264 – 274 .
   Web of Science ®Google Scholar
• Mann , D.G. An ontogenetic approach to diatom systematics . Proceedings of the 7th International Diatom Symposium . Koeltz, Koenigstein. Edited by: Mann , D.G. pp. 113 – 144 .
   Google Scholar
• Mann , D.G. 1984b . Structure, life history and systematics of Rhoicosphenia (Bacillariophyta). V. Initial cell and size reduction in Rh. curvata and a description of the Rhoicospheniaceae fam. nov . Journal of Phycology , 20 : 544 – 555 .
   Web of Science ®Google Scholar
• Mann , D.G. 1989 . The diatom genus Sellaphora: separation from Navicula . British Phycological Journal , 24 : 1 – 20 .
   Web of Science ®Google Scholar
• Mann , D.G. Towards a revision of the raphid diatoms . Proceedings of the 10th International Diatom Symposium . Koeltz, Koenigstein. Edited by: Simola , H. pp. 23 – 35 .
   Google Scholar
• Mann , D.G. 1996 . The systematics of Stauroneis (Bacillariophyta): Sexual reproduction and auxospore development in S. anceps var. sibirica . Nova Hedwigia Beiheft , 112 : 307 – 319 .
   Google Scholar
• Mann , D.G. 1996 . “ Chloroplast morphology, movements and inheritance in diatoms ” . In Cytology, Genetics and Molecular Biology of Algae. , Edited by: Chaudhary , B.R. and Agrawal , S.B. 249 – 274 . Amsterdam, , The Netherlands : SPB Academic Publishing .
   Google Scholar
• Mann , D.G. and Stickle , A.J. 1991 . The genus Craticula . Diatom Research , 6 : 79 – 107 .
   Google Scholar
• Massé , G. , Rincé , Y. , Cox , E.J. , Allard , G. , Belt , S. and Rowland , S. 2001 . Haslea salstonica sp. nov. and Haslea pseudostrearia sp. nov., two new marine diatoms from the Salcombe estuary, Devon, U.K. . Comptes Rendues de l'Academie de Sciences , 324 : 617 – 626 .
   PubMed Web of Science ®Google Scholar
• Mayama , S. and Kobayasi , H. 1989 . Sequential valve development in the monoraphid diatom Achnanthes minutissima var. saprophila . Diatom Research , 4 : 111 – 117 .
   Google Scholar
• Medlin , L.K. and Kaczmarska , I. 2004 . Evolution of the diatoms: V. Morphological and cytological support for the major clades and a taxonomic revision . Phycologia , 43 : 245 – 270 .
   Web of Science ®Google Scholar
• Mereschkowsky , C. 1902–3 . Les types de l'endochrome chez les diatomées . Scripta Botanica Horti Universitatis Imperatoris Pet‐ropolitanae , 21 : 1 – 106 .
   Google Scholar
• Nixon , K.C. 2002 . WinClada ver. 1.00.08 , Ithaca, NY : Published by the author .
   Google Scholar
• Novarino , G. 1990 . Observations on the frustule architecture of Mas‐togloia smithii with particular reference to the valvocopulae and its integration with the valve . Diatom Research , 5 : 373 – 385 .
   Google Scholar
• Paddock , T.B.B. and Kemp , K. 1990 . An illustrated survey of the morphological features of the diatom genus Mastogloia . Diatom Research , 5 : 73 – 103 .
   Google Scholar
• Passy‐Tolar , S.I. and Lowe , R.L. 1995 . Gomphoneis mesta (Bacillariophyta). II. Morphology of the initial frustules and perizonium ultrastructure with some inferences about diatom evolution . Journal of Phycology , 31 : 447 – 456 .
   Web of Science ®Google Scholar
• Patrick , R. and Reimer , C.W. 1966 . The diatoms of the United States , Monographs of the Academy of Natural Sciences of Philadelphia, No. 13 Vol. I ,
   Google Scholar
• Patrick , R. and Reimer , C.W. 1975 . The diatoms of the United States , Monographs of the Academy of Natural Sciences of Philadelphia, No. 13 Vol. II , Part 1
   Google Scholar
• Ross , R. , Cox , E.J. , Karayeva , N.I. , Mann , D.G. , Paddock , T.B.B. , Simonsen , R. and Sims , P.A. 1979 . An amended terminology for the siliceous components of the diatom cell . Nova Hedwigia Beiheft , 64 : 513 – 533 .
   Google Scholar
• Ross , R. and Sims , P.A. 1972 . The fine structure of the frustule in centric diatoms : a suggested terminology . British Phycological Journal , 7 : 139 – 163 .
   Google Scholar
• Round , F.E. , Crawford , R.M. and Mann , D.G. 1990 . The Diatoms. Biology and Morphology of the Genera. , Cambridge : Cambridge University Press .
   Google Scholar
• Schmid , A.‐M.M. and Economou‐Amilli , A. Value of pyrenoids in the systematics of the diatoms; their morphology and ultrastructure . Proceedings of the 16th International Diatom Symposium, 25 Aug. — 1 Sept. 2000, Athens and Aegean Islands . pp. 1 – 31 . Greece : University of Athens .
   Google Scholar
• Smith , H.L. 1872 . Conspectus of the families and genera of the Diat‐omaceae . The Lens , 1 : 1 – 19 . 72 – 93 . 154 – 157 .
   Google Scholar
• Sorhannus , U. 2004 . Diatom phylogenetics inferred based on direct optimization of nuclear‐encoded SSU rRNA sequences . Cladistics , 20 : 487 – 497 .
   PubMed Web of Science ®Google Scholar
• Stephens , F.C. and Gibson , R.A. 1980 . Ultrastructural studies of some Mastogloia (Bacillariophyceae) species belonging to the groups Undulatae, Apiculatae, Lanceolatae and Paradoxae . Phycologia , 19 : 143 – 152 .
   Web of Science ®Google Scholar
• Stickle , A.J. 1986 . Mastogloia smithii has a method of sexual reproduction hitherto unknown in raphid diatoms . Diatom Research , 1 : 271 – 282 .
   Google Scholar
• Tschermak‐Woess , E. 1953 . Über auffallende Strukturen in den Pyrenoiden einiger Naviculoideen . Österreichische Botanische Zeitschrift , 100 : 160 – 178 .
   Google Scholar
• Corresponding author. Email: [email protected]
   Google Scholar