1,008
Views
13
CrossRef citations to date
0
Altmetric
Original Articles

Surveillance for highly pathogenic influenza A viruses in California during 2014–2015 provides insights into viral evolutionary pathways and the spatiotemporal extent of viruses in the Pacific Americas Flyway

Influenza A viruses in California during 2014–2015

, , , , , , , , , , , , , & show all
Pages 1-10 | Received 13 Apr 2017, Accepted 28 Jun 2017, Published online: 15 Jan 2019

References

  • Li KS, Guan Y, Wang Jet al.Genesis of a highly pathogenic and potentially pandemic H5N1 influenza virus in eastern Asia. Nature 2004;430: 209–213.
  • Zhao G, Gu X, Lu Xet al.Novel reassortant highly pathogenic H5N2 avian influenza viruses in poultry in China. PLoS One 2012;7: e46183.
  • Zhao K, Gu M, Zhong Let al.Characterization of three H5N5 and one H5N8 highly pathogenic avian influenza viruses in China. Vet Microbiol 2013;163: 351–357.
  • Qi X, Cui L, Yu Het al.Whole-genome sequence of a reassortant H5N6 avian influenza virus isolated from a live poultry market in China, 2013. Genome Announc 2014;2: e00706–e00714.
  • Pasick J, Berhane Y, Joseph Tet al.Reassortant highly pathogenic influenza A H5N2 virus containing gene segments related to Eurasian H5N8 in British Columbia, Canada, 2014. Sci Rep 2015;5: 9484.
  • Ip HS, Torchetti MK, Crespo Ret al.Novel Eurasian highly pathogenic avian influenza A H5 viruses in wild birds, Washington, USA, 2014. Emerg Infect Dis 2015;21: 886–890.
  • Torchetti MK, Killian ML, Dusek RJet al.Novel H5 clade 2.3. 4.4 reassortant (H5N1) virus from a green-winged teal in Washington, USA. Genome Announc 2015;3: e00195-15.
  • Verhagen JH, van der Jeugd HP, Nolet BAet al.Wild bird surveillance around outbreaks of highly pathogenic avian influenza A (H5N8) virus in the Netherlands, 2014, within the context of global flyways. Euro Surveill 2015;20: 21069.
  • Bi Y, Chen Q, Wang Qet al.Genesis, evolution and prevalence of H5N6 avian influenza viruses in China. Cell Host Microbe 2016;20: 810–821.
  • Lee MS, Chen LH, Chen YPet al.Highly pathogenic avian influenza viruses H5N2, H5N3, and H5N8 in Taiwan in 2015. Vet Microbiol 2016;187: 50–57.
  • Lee DH, Torchetti MK, Winker Ket al.Intercontinental spread of Asian-origin H5N8 to North America through Beringia by migratory birds. J Virol 2015;89: 6521–6524.
  • Miller MR, Takekawa JY, Fleskes JPet al.Spring migration of northern pintails from California's Central Valley wintering area tracked with satellite telemetry: routes, timing, and destinations. Can J Zool 2005;83: 1314–1332.
  • Hupp JW, Schmutz JA, Ely CRet al.Moult migration of emperor geese Chen canagica between Alaska and Russia. J Avian Biol 2007;38: 462–470.
  • Hupp JW, Yamaguchi N, Flint PLet al.Variation in spring migration routes and breeding distribution of northern pintails Anas acuta that winter in Japan. J Avian Biol 2011;42: 289–300.
  • Ramey AM, Reeves AB, Sonsthagen SAet al.Dispersal of H9N2 influenza A viruses between East Asia and North America by wild birds. Virology 2015;482: 79–83.
  • Bevins SN, Dusek RJ, White CLet al.Widespread detection of highly pathogenic H5 influenza viruses in wild birds from the Pacific flyway of the United States. Sci Rep 2016;6: 28980.
  • Pantin-Jackwood MJ, Costa-Hurtado M, Shepherd Eet al.Pathogenicity and transmission of H5 and H7 highly pathogenic avian influenza viruses in mallards. J Virol 2016;90: 9967–9982.
  • Ramey AM, Reeves AB, TeSlaa JLet al.Evidence for common ancestry among viruses isolated from wild birds in Beringia and highly pathogenic intercontinental reassortant H5N1 and H5N2 influenza A viruses. Infect Genet Evol 2016;40: 176–185.
  • Hill NJ, Hussein ITM, Davis KRet al.Reassortment of influenza A viruses in wild birds in Alaska before H5 clade 2.3.4.4 outbreaks. Emerg Infect Dis 2017;23: 654–657.
  • St Aubin DJ, Barker IK, Webster RGet al.Mass mortality of harbor seals: pneumonia associated with influenza A virus. Science 1982;215: 1129–1131.
  • Callan RJ, Early G, Kida Het al.The appearance of H3 influenza viruses in seals. J Gen Virol 1995;76: 199–203.
  • Anthony SJ, Leger JS, Pugliares Ket al.Emergence of fatal avian influenza in New England harbor seals. MBio 2012;3: e00166-12.
  • Goldstein T, Mena I, Anthony SJet al.Pandemic H1N1 influenza isolated from free-ranging Northern Elephant Seals in 2010 off the central California coast. PLoS One 2013;8: e62259.
  • Boyce WM, Mena I, Yochem PKet al.Influenza A (H1N1) pdm09 virus infection in marine mammals in California. Emerg Microbes Infect 2013;1: e40.
  • Puryear WB, Keogh M, Hill Net al.Prevalence of influenza A virus in live-captured North Atlantic gray seals: a possible wild reservoir. Emerg Microbes Infect 2016;5: e81.
  • Runstadler JA, Happ GM, Slemons RDet al.Using RRT-PCR analysis and virus isolation to determine the prevalence of avian influenza virus infections in ducks at Minto Flats State Game Refuge, Alaska, during August 2005. Arch Virol 2007;152: 1901–1910.
  • Mena I, Nelson MI, Quezada-Monroy Fet al.Origins of the 2009 H1N1 influenza pandemic in swine in Mexico. eLIFE 2016;5: e16777.
  • Kearse M, Moir R, Wilson Aet al.Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 2012;28: 1647–1649.
  • Bao Y, Bolotov P, Dernovoy Det al.The influenza virus resource at the national center for biotechnology information. J Virol 2008;82: 596–601.
  • Edgar RC.MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004;32: 1792–1797.
  • Stamatakis AP.RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 2006;22: 2688–2690.
  • Drummond AJ, Rambaut A.BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 2007;7: 214.
  • Drummond AJ, Suchard MA, Xie Det al.Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol Biol Evol 2012;29: 1969–1973.
  • Henaux V, Samuel MD, Dusek RJet al.Presence of avian influenza viruses in waterfowl and wetlands during summer 2010 in California: are resident birds a potential reservoir? PLoS One 2012;7: e31471.
  • Pearce JM, Ramey AM, Flint PLet al.Avian influenza at both ends of a migratory flyway: characterizing viral genomic diversity to optimize surveillance plans for North America. Evol Appl 2009;2: 457–468.
  • Hill NJ, Takekawa JY, Cardona CJet al.Waterfowl ecology and avian influenza in California: do host traits inform us about viral occurrence? Avian Dis 2010;54: 426–432.
  • Lee DH, Bahl J, Torchetti MKet al.Highly pathogenic avian influenza viruses and generation of novel reassortants, United States, 2014-2015. Emerg Infect Dis 2016;22: 1283–1285.
  • Krauss S, Stallknecht DE, Slemons RDet al.The enigma of the apparent disappearance of Eurasian highly pathogenic H5 clade 2.3. 4.4 influenza A viruses in North American waterfowl. Proc Natl Acad Sci USA 2016;113: 9033–9038.
  • Lee D, Kim Torchetti M, Killian Met al.Reoccurrence of avian influenza A(H5N2) virus clade 2.3.4.4 in wild birds, Alaska, USA, 2016. Emerg Infect Dis 2017;23: 365–367.
  • US Department of Agriculture (USDA) Wild bird positive highly pathogenic avian influenza cases in the United States: July 2016 to June 2017. Available at https://www.aphis.usda.gov/animal_health/downloads/animal_diseases/ai/uspositivecases17.pdf (accessed 24 January 2017).
  • Office International des Epizooties (OIE) Update on highly pathogenic avian influenza in animals (type H5 and H7). Available at http://www.oie.int/en/animal-health-in-the-world/update-on-avian-influenza/2017/ (accessed 24 January 2017).
  • Kang HM, Lee EK, Song BMet al.Novel reassortant influenza A (H5N8) viruses among inoculated domestic and wild ducks, South Korea, 2014. Emerg Infect Dis 2015;21: 298–304.
  • DeJesus E, Costa-Hurtado M, Smith Det al.Changes in adaptation of H5N2 highly pathogenic avian influenza H5 clade 2.3. 4.4 viruses in chickens and mallards. Virology 2016;499: 52–64.
  • Ramey AM, Spackman E, Kim-Torchetti Met al.Weak support for disappearance and restricted emergence/persistence of highly pathogenic influenza A in North American waterfowl. Proc Natl Acad Sci USA 2016;113: E6551–E6552.