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Original Articles

Marmota himalayana in the Qinghai–Tibetan plateau as a special host for bi-segmented and unsegmented picobirnaviruses

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Pages 1-8 | Received 19 Sep 2017, Accepted 11 Dec 2017, Published online: 07 Mar 2018

References

  • JonesKEPatelNGLevyMAGlobal trends in emerging infectious diseasesNature2008451 990 99310.1038/nature06536
  • KooriyamaTOkamotoMYoshidaTEpidemiological study of zoonoses derived from humans in captive chimpanzeesPrimates201354899810.1007/s10329-012-0320-8
  • KhalafallaAIMERS-CoV in upper respiratory tract and lungs of dromedary camels, Saudi Arabia, 2013-2014Emerg. Infect. Dis.2015211153115810.3201/eid2107.1500704480395
  • WacharapluesadeeSOlivalKJKanchanasakaBSurveillance for Ebola virus in wildlife, ThailandEmerg. Infect. Dis.2015212271227310.3201/eid2112.1508604672430
  • GePXiJDingJPrimary case of human pneumonic plague occurring in a Himalayan marmot natural focus area Gansu Province, ChinaInt. J. Infect. Dis.201533677010.1016/j.ijid.2014.12.044
  • AoYYuJLiLDiverse novel astroviruses identified in wild Himalayan marmotsJ. Gen. Virol.20179861262310.1099/jgv.0.000709
  • YuJMLiLLZhangCYA novel hepatovirus identified in wild woodchuck Marmota himalayanaSci. Rep.2016610.1038/srep223614770319
  • McDonaldSMNelsonMITurnerPEPattonJTReassortment in segmented RNA viruses: mechanisms and outcomesNat. Rev. Microbiol.20161444846010.1038/nrmicro.2016.465119462
  • MorenoEExploration of sequence space as the basis of viral RNA genome segmentationProc. Natl. Acad. Sci. USA20141116678668310.1073/pnas.13231361114020086
  • QinXCShiMTianJHA tick-borne segmented RNA virus contains genome segments derived from unsegmented viral ancestorsProc. Natl. Acad. Sci. USA20141116744674910.1073/pnas.13241941114020047
  • CarstensEBRatification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2009)Arch. Virol.201015513314610.1007/s00705-009-0547-x
  • CarstensEBBallLARatification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2008)Arch. Virol.20091541181118810.1007/s00705-009-0400-2
  • GaneshBMasachessiGMladenovaZAnimal picobirnavirusVirusdisease20142522323810.1007/s13337-014-0207-y4188182
  • BanyaiKPotgieterCGellertAGenome sequencing identifies genetic and antigenic divergence of porcine picobirnavirusesJ. Gen. Virol.2014952233223910.1099/vir.0.057984-0
  • WakudaMPongsuwannaYTaniguchiKComplete nucleotide sequences of two RNA segments of human picobirnavirusJ. Virol. Methods200512616516910.1016/j.jviromet.2005.02.010
  • LiLGiannittiFLowJExploring the virome of diseased horsesJ. Gen. Virol.2015962721273310.1099/vir.0.0001994635498
  • RosenBIFangZYGlassRIMonroeSSCloning of human picobirnavirus genomic segments and development of an RT-PCR detection assayVirology200027731632910.1006/viro.2000.0594
  • SmitsSLSchapendonkCMvan BeekJNew viruses in idiopathic human diarrhea cases, the NetherlandsEmerg. Infect. Dis.2014201218122210.3201/eid2007.1401904073879
  • GiordanoMOMartinezLCRinaldiDDiarrhea and enteric emerging viruses in HIV-infected patientsAIDS Res. Hum. Retrovir.1999151427143210.1089/088922299309937
  • ValleMCMartinezLCFerreyraLJViral agents related to diarrheic syndrome in kidney transplanted patientsMed. (B. Aires).200161179182
  • GrabherrMGHaasBJYassourMFull-length transcriptome assembly from RNA-Seq data without a reference genomeNat. Biotechnol.20112964465210.1038/nbt.18833571712
  • LangmeadBSalzbergSLFast gapped-read alignment with Bowtie 2Nat. Methods2012935735910.1038/nmeth.19233322381
  • LiBRuottiVStewartRMThomsonJADeweyCNRNA-Seq gene expression estimation with read mapping uncertaintyBioinformatics20102649350010.1093/bioinformatics/btp692
  • KatohKStandleyDMMAFFT multiple sequence alignment software version 7: improvements in performance and usabilityMol. Biol. Evol.20133077278010.1093/molbev/mst0103603318
  • GuindonSGascuelOA simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihoodSyst. Biol.20035269670410.1080/10635150390235520
  • Da CostaBDuquerroySTarusBDelmasBPicobirnaviruses encode a protein with repeats of the ExxRxNxxxE motifVirus Res.201115825125610.1016/j.virusres.2011.02.018
  • GhoshSKobayashiNNagashimaSNaikTNMolecular characterization of full-length genomic segment 2 of a bovine picobirnavirus (PBV) strain: evidence for high genetic diversity with genogroup I PBVsJ. Gen. Virol.2009902519252410.1099/vir.0.013987-0
  • NgTFVegaEKondovNODivergent picobirnaviruses in human fecesGenome Announc20142e004151410.1128/genomeA.00415-144022810
  • VermaHMorSKErberJGoyalSMPrevalence and complete genome characterization of turkey picobirnavirusesInfect. Genet. Evol.20153013413910.1016/j.meegid.2014.12.014
  • ShiMLinXDVasilakisNDivergent viruses discovered in arthropods and vertebrates revise the evolutionary history of the Flaviviridae and related virusesJ. Virol.20159065966910.1128/JVI.02036-154702705
  • LiCShiMTianJHUnprecedented genomic diversity of RNA viruses in arthropods reveals the ancestry of negative-sense RNA virusesElife20154e053784384744
  • DambaughTRKieffEIdentification and nucleotide sequences of two similar tandem direct repeats in Epstein-Barr virus DNAJ. Virol.198244823833256339
  • GritsunTSGouldEAThe 3’ untranslated region of tick-borne flaviviruses originated by the duplication of long repeat sequences within the open reading frameVirology200635026927510.1016/j.virol.2006.03.002
  • VolozhantsevNVMyakininaVPPopovaAVComplete genome sequence of novel T7-like virus vB_KpnP_KpV289 with lytic activity against Klebsiella pneumoniaeArch. Virol.201616149950110.1007/s00705-015-2680-z
  • WangYTaoQ[Function of direct repeat sequences in DNA replication of hepatitis B virus]Zhonghua. Yi. Xue. Za. Zhi.199070604607
  • WohlrabFMcLeanMJWellsRDThe segment inversion site of herpes simplex virus type 1 adopts a novel DNA structureJ. Biol. Chem.198726264076416
  • YalamanchiliRRO’CallaghanDJSequence and organization of the genomic termini of equine herpesvirus type 1Virus Res.19901514916110.1016/0168-1702(90)90005-V