Advanced search
Publication Cover
Emerging Microbes & Infections Volume 7, 2018 - Issue 1
Submit an article Journal homepage
1,359
Views
21
CrossRef citations to date
0
Altmetric
Original Articles

Have compensatory mutations facilitated the current epidemic of multidrug-resistant tuberculosis?

Qingyun LiuKey Laboratory of Medical Molecular Virology at the School of Basic Medical Sciences, Shanghai Medical College, Shanghai Public Health Clinical CenterFudan UniversityShanghaiChina;Shenzhen Center for Chronic Disease ControlShenzhenChina
,
Tianyu ZuoKey Laboratory of Medical Molecular Virology at the School of Basic Medical Sciences, Shanghai Medical College, Shanghai Public Health Clinical CenterFudan UniversityShanghaiChina
,
Peng XuKey Laboratory of Characteristic Infectious Disease & Bio-safety Development of Guizhou Province Education DepartmentZunyi Medical UniversityZunyiGuizhouChina
,
Qi JiangKey Laboratory of Medical Molecular Virology at the School of Basic Medical Sciences, Shanghai Medical College, Shanghai Public Health Clinical CenterFudan UniversityShanghaiChina;Shenzhen Center for Chronic Disease ControlShenzhenChinaORCID Iconhttp://orcid.org/0000-0002-3872-6312
ORCID Icon,
Jie WuShanghai Municipal Center for Disease Control and PreventionShanghaiChina
,
Mingyu GanKey Laboratory of Medical Molecular Virology at the School of Basic Medical Sciences, Shanghai Medical College, Shanghai Public Health Clinical CenterFudan UniversityShanghaiChina;Shenzhen Center for Chronic Disease ControlShenzhenChina
,
Chongguang YangDepartment of Epidemiology of Microbial Diseases, School of Public HealthYale UniversityNew HavenCTUSA
,
Ravi PrakashKey Laboratory of Medical Molecular Virology at the School of Basic Medical Sciences, Shanghai Medical College, Shanghai Public Health Clinical CenterFudan UniversityShanghaiChina
,
Guofeng ZhuShanghai Municipal Center for Disease Control and PreventionShanghaiChina
,
Howard E. TakiffUnité de Génétique Mycobacterienne, Institut PasteurParisFrance
&
Qian GaoKey Laboratory of Medical Molecular Virology at the School of Basic Medical Sciences, Shanghai Medical College, Shanghai Public Health Clinical CenterFudan UniversityShanghaiChina;Shenzhen Center for Chronic Disease ControlShenzhenChinaCorrespondence[email protected]
 show all
Pages 1-8 | Received 24 Feb 2018, Accepted 29 Apr 2018, Published online: 06 Jun 2018

References

  • GagneuxSThe competitive cost of antibiotic resistance in Mycobacterium tuberculosisScience2006312 1944 194610.1126/science.1124410
  • LucianiFSissonSAJiangHFrancisARTanakaMMThe epidemiological fitness cost of drug resistance in Mycobacterium tuberculosisProc. Natl Acad. Sci. USA2009106147111471510.1073/pnas.09024371062732896
  • DyeCWilliamsBGEspinalMARaviglioneMCErasing the world’s slow stain: strategies to beat multidrug-resistant tuberculosisScience20022952042204610.1126/science.1063814
  • CohenTSommersBMurrayMThe effect of drug resistance on the fitness of Mycobacterium tuberculosisLancet Infect. Dis.20033132110.1016/S1473-3099(03)00483-3
  • HandelARegoesRRAntiaRThe role of compensatory mutations in the emergence of drug resistancePLoS Comput. Biol.20062e13710.1371/journal.pcbi.00201371599768
  • ComasIWhole-genome sequencing of rifampicin-resistant Mycobacterium tuberculosis strains identifies compensatory mutations in RNA polymerase genesNat. Genet.20124410611010.1038/ng.1038
  • MeftahiNEvidence for the critical role of a secondary site rpoB mutation in the compensatory evolution and successful transmission of an MDR tuberculosis outbreak strainJ. Antimicrob. Chemother.20167132433210.1093/jac/dkv345
  • de VosMPutative compensatory mutations in the rpoC gene of rifampin-resistant Mycobacterium tuberculosis are associated with ongoing transmissionAntimicrob. Agents Chemother.20135782783210.1128/AAC.01541-123553702
  • LiQJCompensatory mutations of rifampin resistance are associated with transmission of multidrug-resistant Mycobacterium tuberculosis Beijing Genotype Strains in ChinaAntimicrob. Agents Chemother.2016602807281210.1128/AAC.02358-154862491
  • YangCTransmission of multidrug-resistant Mycobacterium tuberculosis in Shanghai, China: A retrospective observational study using whole-genome sequencing and epidemiological investigationLancet Infect. Dis.20171727528410.1016/S1473-3099(16)30418-2
  • BurgosMDeRiemerKSmallPMHopewellPCDaleyCLEffect of drug resistance on the generation of secondary cases of tuberculosisJ. Infect. Dis.20031881878188410.1086/379895
  • BahrmandARTitovLPTasbitiAHYariSGravissEAHigh-level rifampin resistance correlates with multiple mutations in the rpoB gene of pulmonary tuberculosis isolates from the Afghanistan border of IranJ. Clin. Microbiol.2009472744275010.1128/JCM.r00548-092738065
  • MachadoDHigh-level resistance to isoniazid and ethionamide in multidrug-resistant Mycobacterium tuberculosis of the Lisboa family is associated with inhA double mutationsJ. Antimicrob. Chemother.2013681728173210.1093/jac/dkt090
  • SafiHEvolution of high-level ethambutol-resistant tuberculosis through interacting mutations in decaprenylphosphoryl-beta-D-arabinose biosynthetic and utilization pathway genesNat. Genet.2013451190119710.1038/ng.27436103293
  • Huo, F. et al. Increasing prevalence of rifampicin-resistant Mycobacterium tuberculosis is associated with the transmission of strains harboring compensatory mutations in China: a 10-year comparative analysis. Antimicrob. Agents Chemother. 10.1128/AAC.02303-17 (2018).
  • PanXLA quantitative and efficient approach to select MIRU-VNTR loci based on accumulation of the percentage differences of strains for discriminating divergent Mycobacterium tuberculosis sublineagesEmerg. Microbes Infect.20176e6810.1038/emi.2017.585567172
  • SalvatorePPFitness costs of drug resistance mutations in multidrug-resistant Mycobacterium tuberculosis: a household-based case-control studyJ. Infect. Dis.201621314915510.1093/infdis/jiv347
  • BorrellSGagneuxSInfectiousness, reproductive fitness and evolution of drug-resistant Mycobacterium tuberculosisInt. J. Tuberc. Lung. Dis.20091314561466
  • BlowerSMChouTModeling the emergence of the ‘hot zones’: tuberculosis and the amplification dynamics of drug resistanceNat. Med.2004101111111610.1038/nm1102
  • CasaliNMicroevolution of extensively drug-resistant tuberculosis in RussiaGenome Res.20122273574510.1101/gr.128678.1113317155
  • CasaliNEvolution and transmission of drug-resistant tuberculosis in a Russian populationNat. Genet.20144627928610.1038/ng.28783939361
  • LangeCManagement of patients with multidrug-resistant/extensively drug-resistant tuberculosis in Europe: a TBNET consensus statementEur. Respir. J.201444236310.1183/09031936.001883134076529
  • WuWImprovement in clinical outcome and infection control using molecular diagnostic techniques for early detection of MDR tuberculous spondylitis: a multicenter retrospective studyEmerg. Microbes Infect.20176e9710.1038/emi.2017.835717086
  • ShcherbakovDDirected mutagenesis of Mycobacterium smegmatis 16S rRNA to reconstruct the in vivo evolution of aminoglycoside resistance in Mycobacterium tuberculosisMol. Microbiol.20107783084010.1111/j.1365-2958.2010.07218.x
  • MacLeanRCVogwillTLimits to compensatory adaptation and the persistence of antibiotic resistance in pathogenic bacteriaEvol. Med. Public Health2014201541210.1093/emph/eou0324323496
  • BjorkmanJNagaevIBergOGHughesDAnderssonDIEffects of environment on compensatory mutations to ameliorate costs of antibiotic resistanceScience20002871479148210.1126/science.287.5457.1479
  • SniderDEJrKellyGDCauthenGMThompsonNJKilburnJOInfection and disease among contacts of tuberculosis cases with drug-resistant and drug-susceptible bacilliAm. Rev. Respir. Dis.1985132125132
  • TeeterLDEvaluation of large genotypic Mycobacterium tuberculosis clusters: contributions from remote and recent transmissionTuberculosis (Edinb.)201393Suppl.S38S4610.1016/S1472-9792(13)70009-X
  • LiuQGenetic features of Mycobacterium tuberculosis modern Beijing sublineageEmerg. Microbes Infect.20165e1410.1038/emi.2016.144777927
  • Joshi, N. & Fass, J. Sickle: A sliding-window, adaptive, quality-based trimming tool for FastQ files (Version 1.33)[Software]. (2011).
  • LangmeadBSalzbergSLFast gapped-read alignment with Bowtie 2Nat. Methods2012935735910.1038/nmeth.19233322381
  • LiHThe Sequence Alignment/Map format and SAMtoolsBioinformatics2009252078207910.1093/bioinformatics/btp3522723002
  • KoboldtDCVarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencingGenome Res.20122256857610.1101/gr.129684.1113290792
  • TamuraKStecherGPetersonDFilipskiAKumarSMEGA6: Molecular Evolutionary Genetics Analysis version 6.0Mol. Biol. Evol.2013302725272910.1093/molbev/mst1973840312

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.