Tracking microevolution events among ST11 carbapenemase-producing hypervirulent Klebsiella pneumoniae outbreak strains

Ning DongShenzhen Key Lab for Food Biological Safety ControlFood Safety and Technology Research Center, Hong Kong PolyU Shen Zhen Research InstituteShenzhenChina;State Key Lab of Chirosciences, Department of Applied Biology and Chemical TechnologyThe Hong Kong Polytechnic UniversityHung HomKowloonHong Kong

Xuemei YangShenzhen Key Lab for Food Biological Safety ControlFood Safety and Technology Research Center, Hong Kong PolyU Shen Zhen Research InstituteShenzhenChina;State Key Lab of Chirosciences, Department of Applied Biology and Chemical TechnologyThe Hong Kong Polytechnic UniversityHung HomKowloonHong Kong

Rong ZhangSecond Affiliated Hospital of Zhejiang UniversityHangzhouChina

Edward Wai-Chi ChanState Key Lab of Chirosciences, Department of Applied Biology and Chemical TechnologyThe Hong Kong Polytechnic UniversityHung HomKowloonHong Kong

Sheng ChenShenzhen Key Lab for Food Biological Safety ControlFood Safety and Technology Research Center, Hong Kong PolyU Shen Zhen Research InstituteShenzhenChina;State Key Lab of Chirosciences, Department of Applied Biology and Chemical TechnologyThe Hong Kong Polytechnic UniversityHung HomKowloonHong KongCorrespondence[email protected]

http://orcid.org/0000-0003-3526-7808

Pages 1-8 | Received 18 Apr 2018, Accepted 27 Jun 2018, Published online: 12 Aug 2018

Cite this article
https://doi.org/10.1038/s41426-018-0146-6
CrossMark

Full Article
Figures & data
References
Supplemental
Citations
Metrics
Licensing
Reprints & Permissions
View PDF PDF

References

StruveCMapping the Evolution of Hypervirulent Klebsiella pneumoniaemBio20156 e0063010.1128/mBio.00630-154513082
PubMed Web of Science ®Google Scholar
QiYST11, the dominant clone of KPC-producing Klebsiella pneumoniae in ChinaJ. Antimicrob. Chemother.201166307 31210.1093/jac/dkq431
PubMed Web of Science ®Google Scholar
Chen, L. & Kreiswirth B. N. Convergence of carbapenem-resistance and hypervirulence in Klebsiella pneumoniae. Lancet Infect. Dis., 18, 2–3 (2018).
Google Scholar
ZhangREmergence of carbapenem-resistant serotype K1 hypervirulent Klebsiella pneumoniae strains in ChinaAntimicrob. Agents Chemother.20156070971110.1128/AAC.02173-154704206
PubMed Web of Science ®Google Scholar
Shankar, C. et al. Draft genome sequences of three hypervirulent carbapenem-resistant Klebsiella pneumoniae isolates from bacteremia. Genome Announc., 4, e01081–16 (2016).
Google Scholar
Gu, D. et al. A fatal outbreak of ST11 carbapenem-resistant hypervirulent Klebsiella pneumoniae in a Chinese hospital: a molecular epidemiological study. Lancet Infect. Dis., 2017.
Google Scholar
YaoBClinical and molecular characteristics of multi-clone carbapenem-resistant hypervirulent (hypermucoviscous) Klebsiella pneumoniae isolates in a tertiary hospital in Beijing, ChinaInt. J. Infect. Dis.20153710711210.1016/j.ijid.2015.06.023
PubMed Web of Science ®Google Scholar
ZhangYEmergence of a hypervirulent carbapenem-resistant Klebsiella pneumoniae isolate from clinical infections in ChinaJ. Infect.20157155356010.1016/j.jinf.2015.07.010
PubMed Web of Science ®Google Scholar
GoodwinSMcPhersonJDMcCombieWRComing of age: ten years of next-generation sequencing technologiesNat. Rev. Genet.20161733310.1038/nrg.2016.49
PubMed Web of Science ®Google Scholar
LiREfficient generation of complete sequences of MDR-encoding plasmids by rapid assembly of MinION barcoding sequencing dataGigascience2018719
Web of Science ®Google Scholar
Dong, N. et al. Genome analysis of Clinical Multilocus Sequence Type 11 Klebsiella pneumoniae from China. Microb. Genom., 10.1099/mgen.0.000149 (2018).
Google Scholar
WongMHYEmergence of carbapenem-resistant hypervirulent Klebsiella pneumoniaeLancet Infect. Dis.2018182410.1016/S1473-3099(17)30629-1
PubMed Web of Science ®Google Scholar
DuPZhangYChenCEmergence of carbapenem-resistant hypervirulent Klebsiella pneumoniaeLancet Infect. Dis.201818232410.1016/S1473-3099(17)30625-4
PubMed Web of Science ®Google Scholar
ZhangLWhole-genome sequence of a carbapenem-resistant hypermucoviscous Klebsiella pneumoniae isolate SWU01 with capsular serotype K47 belonging to ST11 from a patient in ChinaJ. Glob. Antimicrob. Resist.201711878910.1016/j.jgar.2017.09.001
PubMed Web of Science ®Google Scholar
LaiYCPengHLChangHYIdentification of genes induced in vivo during Klebsiella pneumoniae CG43 InfectionInfect. Immun.2001697140714510.1128/IAI.69.11.7140-7145.2001100105
PubMed Web of Science ®Google Scholar
BronnerDClarkeBRWhitfieldCIdentification of an ATP‐binding cassette transport system required for translocation of lipopolysaccharide O‐antigen side‐chains across the cytoplasmic membrane of Klebsiella pneumoniae serotype O1Mol. Microbiol.19941450551910.1111/j.1365-2958.1994.tb02185.x
PubMed Web of Science ®Google Scholar
Lam, M. M. et al. Population genomics of hypervirulent Klebsiella pneumoniae clonal group 23 reveals early emergence and rapid global dissemination. bioRxiv, 10.1101/225359 (2017).
Google Scholar
LiJSequential isolation in a patient of Raoultella planticola and Escherichia coli bearing a novel ISCR1 element carrying blaNDM-1PLoS One20149e8989310.1371/journal.pone.00898933940617
PubMed Web of Science ®Google Scholar
MathersAJKlebsiella pneumoniae carbapenemase (KPC)-producing K. pneumoniae at a single institution: insights into endemicity from whole-genome sequencingAntimicrob. Agents Chemother.2015591656166310.1128/AAC.04292-144325807
PubMed Web of Science ®Google Scholar
ZautnerAEMonitoring microevolution of OXA-48-producing Klebsiella pneumoniae ST147 in a hospital setting by SMRT sequencingJ. Antimicrob. Chemother.2017722737274410.1093/jac/dkx216
PubMed Web of Science ®Google Scholar
ChenLCarbapenemase-producing Klebsiella pneumoniae: molecular and genetic decodingTrends Microbiol.20142268669610.1016/j.tim.2014.09.0034365952
PubMed Web of Science ®Google Scholar
PoirelLThe mgrB gene as a key target for acquired resistance to colistin in Klebsiella pneumoniaeJ. Antimicrob. Chemother.201470758010.1093/jac/dku323
PubMed Web of Science ®Google Scholar
CannatelliAMgrB inactivation is a common mechanism of colistin resistance in KPC carbapenemase-producing Klebsiella pneumoniae of clinical originAntimicrob. Agents Chemother.2014585696570310.1128/AAC.03110-144187966
PubMed Web of Science ®Google Scholar
ArenaFColistin resistance caused by inactivation of the MgrB regulator is not associated with decreased virulence of sequence type 258 KPC carbapenemase-producing Klebsiella pneumoniaeAntimicrob. Agents Chemother.2016602509251210.1128/AAC.02981-154808163
PubMed Web of Science ®Google Scholar
HudsonCMResistance determinants and mobile genetic elements of an NDM-1-encoding Klebsiella pneumoniae strainPLoS One20149e9920910.1371/journal.pone.00992094048246
PubMed Web of Science ®Google Scholar
AdamsMDWrightMSBishopBQuantitative assessment of insertion sequence impact on bacterial genome architectureMicrobial Genomics20162e00006210.1099/mgen.0.0000625343135
PubMed Web of Science ®Google Scholar
ChenYTSequencing and analysis of the large virulence plasmid pLVPK of Klebsiella pneumoniae CG43Gene200433718919810.1016/j.gene.2004.05.008
PubMed Web of Science ®Google Scholar
LiRComplete genetic analysis of plasmids carrying mcr-1 and other resistance genes in an Escherichia coli isolate of animal originJ. Antimicrob. Chemother.201772696699
PubMed Web of Science ®Google Scholar
WickRRUnicycler: resolving bacterial genome assemblies from short and long sequencing readsPLoS. Comput. Biol.201713e100559510.1371/journal.pcbi.10055955481147
PubMed Web of Science ®Google Scholar
OverbeekRThe SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)Nucleic Acids Res.201442D1D206D21410.1093/nar/gkt1226
PubMed Web of Science ®Google Scholar
SeemannTProkka: rapid prokaryotic genome annotationBioinformatics2014302068206910.1093/bioinformatics/btu153
PubMed Web of Science ®Google Scholar
DarlingACMauve: multiple alignment of conserved genomic sequence with rearrangementsGenome Res.2004141394140310.1101/gr.2289704442156
PubMed Web of Science ®Google Scholar
SullivanMJPettyNKBeatsonSAEasyfig: a genome comparison visualizerBioinformatics2011271009101010.1093/bioinformatics/btr0393065679
PubMed Web of Science ®Google Scholar
Nabil-Fareed AlikhanNKPNouriLBenZakourBeatsonScottABLAST Ring Image Generator (BRIG): simple prokaryote genome comparisonsBMC Genomics20111210.1186/1471-2164-12-4023163573
PubMed Web of Science ®Google Scholar

Share icon
Back to Top

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.

People also read
Recommended articles
Cited by

To cite this article:

Reference style: APA Chicago Harvard

Citation copied to clipboard

Reference styles above use APA (6th edition), Chicago (16th edition) & Harvard (10th edition)

Download citation

Download a citation file in RIS format that can be imported by citation management software including EndNote, ProCite, RefWorks and Reference Manager.

Choose format: RIS BibTex RefWorks Direct Export

Choose options: Citation Citation & abstract Citation & references

Tracking microevolution events among ST11 carbapenemase-producing hypervirulent Klebsiella pneumoniae outbreak strains

References

Information for

Open access

Opportunities

Help and information

Your download is now in progress and you may close this window

Login or register to access this feature

Tracking microevolution events among ST11 carbapenemase-producing hypervirulent Klebsiella pneumoniae outbreak strains

References

Related research

To cite this article:

Download citation

Information for

Open access

Opportunities

Help and information

Keep up to date