Advanced search
Publication Cover
Emerging Microbes & Infections Volume 7, 2018 - Issue 1
Submit an article Journal homepage
1,021
Views
20
CrossRef citations to date
0
Altmetric
Original Articles

Genetic characterization and molecular epidemiological analysis of novel enterovirus EV-B80 in China

Zhenzhi HanWHO WPRO Regional Polio Reference Laboratory and National Health Commission Key Laboratory for Medical Virology, National Institute for Viral Disease Control and PreventionChinese Center for Disease Control and PreventionBeijingPeople’s Republic of China
,
Yong ZhangWHO WPRO Regional Polio Reference Laboratory and National Health Commission Key Laboratory for Medical Virology, National Institute for Viral Disease Control and PreventionChinese Center for Disease Control and PreventionBeijingPeople’s Republic of ChinaCorrespondence[email protected]
ORCID Iconhttp://orcid.org/0000-0002-2692-5437
ORCID Icon,
Keqiang HuangWHO WPRO Regional Polio Reference Laboratory and National Health Commission Key Laboratory for Medical Virology, National Institute for Viral Disease Control and PreventionChinese Center for Disease Control and PreventionBeijingPeople’s Republic of China
,
Hui CuiXinjiang Uygur Autonomous Region Center for Disease Control and Prevention, Urumqi CityXinjiang Uygur Autonomous RegionBeijingPeople’s Republic of China
,
Mei HongTibet Center for Disease Control and Prevention, Lhasa CityTibet Autonomous RegionBeijingPeople’s Republic of China
,
Haishu TangXinjiang Uygur Autonomous Region Center for Disease Control and Prevention, Urumqi CityXinjiang Uygur Autonomous RegionBeijingPeople’s Republic of China
,
Yang SongWHO WPRO Regional Polio Reference Laboratory and National Health Commission Key Laboratory for Medical Virology, National Institute for Viral Disease Control and PreventionChinese Center for Disease Control and PreventionBeijingPeople’s Republic of China
,
Qian YangWHO WPRO Regional Polio Reference Laboratory and National Health Commission Key Laboratory for Medical Virology, National Institute for Viral Disease Control and PreventionChinese Center for Disease Control and PreventionBeijingPeople’s Republic of China
,
Shuangli ZhuWHO WPRO Regional Polio Reference Laboratory and National Health Commission Key Laboratory for Medical Virology, National Institute for Viral Disease Control and PreventionChinese Center for Disease Control and PreventionBeijingPeople’s Republic of China
,
Dongmei YanWHO WPRO Regional Polio Reference Laboratory and National Health Commission Key Laboratory for Medical Virology, National Institute for Viral Disease Control and PreventionChinese Center for Disease Control and PreventionBeijingPeople’s Republic of China
&
Wenbo XuWHO WPRO Regional Polio Reference Laboratory and National Health Commission Key Laboratory for Medical Virology, National Institute for Viral Disease Control and PreventionChinese Center for Disease Control and PreventionBeijingPeople’s Republic of China;Anhui University of Science and TechnologyAnhui ProvincePeople’s Republic of China
 show all
Pages 1-12 | Received 22 Jul 2018, Accepted 21 Oct 2018, Published online: 28 Nov 2018

References

  • AdamsMJet al.Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2017)Arch. Virol.2017162 250510.1007/s00705-017-3358-5
  • ZellR.DelwartE.GorbalenyaA. E.HoviT.KingA. M. Q.KnowlesN. J.LindbergA. M.PallanschM. A.PalmenbergA. C.ReuterG.SimmondsP.SkernT.StanwayG.YamashitaT.ICTV Virus Taxonomy Profile: Picornaviridae Journal of General Virology201798102421 242210.1099/jgv.0.000911
  • SeanPNguyenJHSemlerBLAltered interactions between stem-loop IV within the 5’ noncoding region of coxsackievirus RNA and poly(rC) binding protein 2: effects on IRES-mediated translation and viral infectivityVirology20093894510.1016/j.virol.2009.03.012
  • MuslinCJoffretMLPelletierIBlondelBDelpeyrouxFEvolution and emergence of enteroviruses through intra and inter-species recombination: plasticity and phenotypic impact of modular genetic exchanges in the 5′ untranslated regionPLoS Pathog.201511e100526610.1371/journal.ppat.1005266
  • ObersteMSet al.Molecular identification of 13 new enterovirus types, EV79-88, EV97, and EV100-101, members of the species Human Enterovirus BVirus Res.20071283410.1016/j.virusres.2007.04.001
  • ObersteMSet al.Enteroviruses 76, 89, 90 and 91 represent a novel group within the species Human enterovirus AJ. Gen. Virol.20058644510.1099/vir.0.80475-0
  • ZhangYet al.Molecular typing and characterization of a new serotype of human enterovirus (EV-B111) identified in ChinaVirus Res.20141837510.1016/j.virusres.2014.01.002
  • ObersteMSMaherKKilpatrickDRPallanschMAMolecular evolution of the human enteroviruses: correlation of serotype with VP1 sequence and application to picornavirus classificationJ. Virol.1999731941104435
  • ReimannBYZellRKandolfRMapping of a neutralizing antigenic site of Coxsackievirus B4 by construction of an antigen chimeraJ. Virol.1991653475241333
  • ZhangYet al.Complete genome analysis of the C4 subgenotype strains of enterovirus 71: predominant recombination C4 viruses persistently circulating in China for 14 yearsPLoS One20138e5634110.1371/journal.pone.0056341
  • ObersteMSet al.Typing of human enteroviruses by partial sequencing of VP1J. Clin. Microbiol.199937128884754
  • ObersteMSet al.Comparison of classic and molecular approaches for the identification of untypeable enterovirusesJ. Clin. Microbiol.200038117086366
  • ObersteMSet al.Species-specific RT-PCR amplification of human enteroviruses: a tool for rapid species identification of uncharacterized enterovirusesJ. Gen. Virol.20068711910.1099/vir.0.81179-0
  • TaoZexinSongYanyanLiYanLiuYaoJiangPingLinXiaojuanLiuGuifangSongLizhiWangHaiyanXuAiqiangCoxsackievirus B3, Shandong Province, China, 1990–2010Emerging Infectious Diseases201218111865186710.3201/eid1811.120090
  • CalderónKIet al.Molecular epidemiology of coxsackievirus B3 infection in Spain, 2004-2014Arch. Virol.2016161136510.1007/s00705-016-2783-1
  • WangJRet al.Laboratory diagnosis and genetic analysis of an echovirus 30-associated outbreak of aseptic meningitis in Taiwan in 2001J. Clin. Microbiol.200240443910.1128/JCM.40.12.4439-4444.2002
  • MiliaMGet al.Recent outbreak of aseptic meningitis in Italy due to Echovirus 30 and phylogenetic relationship with other European circulating strainsJ. Clin. Virol.20135857910.1016/j.jcv.2013.08.023
  • ChenPet al.A coxsackievirus B5-associated aseptic meningitis outbreak in Shandong Province, China in 2009J. Med. Virol.20138548310.1002/jmv.23478
  • HanJFet al.Recombination of human coxsackievirus B5 in hand, foot, and mouth disease patients, ChinaEmerg. Infect. Dis.20121835110.3201/eid1802.111524
  • TaoZet al.Complete genome sequence of an enterovirus 80 strain isolated in ChinaJ. Virol.2012861312910.1128/JVI.02467-12
  • KronemanAet al.An automated genotyping tool for enteroviruses and norovirusesJ. Clin. Virol.20115112110.1016/j.jcv.2011.03.006
  • SunQet al.Complete genome sequence of a novel human enterovirus 85 (HEV85) recombinant with an unknown new serotype HEV-B donor sequence isolated from a child with acute flaccid paralysisGenome Announc.20131e12
  • SunQet al.Transmission of human enterovirus 85 recombinants containing new unknown serotype HEV-B donor sequences in Xinjiang Uighur autonomous region, ChinaPLoS One20138e5548010.1371/journal.pone.0055480
  • SongYet al.Phylogenetic characterizations of highly mutated EV-B106 recombinants showing extensive genetic exchanges with other EV-B in Xinjiang, ChinaSci. Rep.2017710.1038/srep43080
  • ObersteMSMaherKPallanschMAEvidence for frequent recombination within species human enterovirus B based on complete genomic sequences of all thirty-seven serotypesJ. Virol.20047885510.1128/JVI.78.2.855-867.2004
  • Sadeuh-MbaSAet al.High frequency and diversity of species C enteroviruses in Cameroon and neighboring countriesJ. Clin. Microbiol.20135175910.1128/JCM.02119-12
  • ZhangYet al.An insight into recombination with enterovirus species C and nucleotide G-480 reversion from the viewpoint of neurovirulence of vaccine-derived poliovirusesSci. Rep.2015510.1038/srep17291
  • SimmondsPWelchJFrequency and dynamics of recombination within different species of human enterovirusesJ. Virol.20068048310.1128/JVI.80.1.483-493.2006
  • SmuraTet al.Recombination in the evolution of enterovirus C species sub-group that contains types CVA-21, CVA-24, EV-C95, EV-C96 and EV-C99PLoS One20149e9457910.1371/journal.pone.0094579
  • GeogheganJLet al.Phylodynamics of enterovirus A71-associated hand, foot, and mouth disease in VietnamJ. Virol.201589887110.1128/JVI.00706-15
  • WorobeyMHolmesECEvolutionary aspects of recombination in RNA virusesJ. Gen. Virol.199980Pt 10253510.1099/0022-1317-80-10-2535
  • ZhuZet al.Retrospective seroepidemiology indicated that human enterovirus 71 and coxsackievirus A16 circulated wildly in central and southern China before large-scale outbreaks from 2008Virol. J.2010730010.1186/1743-422X-7-300
  • FanQet al.A novel recombinant enterovirus type EV-A89 with low epidemic strength in Xinjiang, ChinaSci. Rep.2015510.1038/srep18558
  • RaoCDYergolkarPShankarappaKSAntigenic diversity of enteroviruses associated with nonpolio acute flaccid paralysis, India, 2007–2009Emerg. Infect. Dis.201218183310.3201/eid1811.111457
  • LaxmivandanaRYergolkarPGopalkrishnaVChitambarSDCharacterization of the non-polio enterovirus infections associated with acute flaccid paralysis in South-Western IndiaPLoS One20138e6165010.1371/journal.pone.0061650
  • DuongVet al.Molecular epidemiology of human enterovirus 71 at the origin of an epidemic of fatal hand, foot and mouth disease cases in CambodiaEmerg. Microbes. Infect.20165e10410.1038/emi.2016.101
  • BaillyJLet al.Repeated genomic transfers from echovirus 30 to echovirus 6 lineages indicate co-divergence between co-circulating populations of the two human enterovirus serotypesInfect. Genet. Evol.20111127610.1016/j.meegid.2010.06.019
  • DalenoCet al.Complete genome sequence of a novel human enterovirus C (HEV-C117) identified in a child with community-acquired pneumoniaJ. Virol.2012861088810.1128/JVI.01721-12
  • HuLet al.Phylogenetic evidence for multiple intertypic recombinations in enterovirus B81 strains isolated in Tibet, ChinaSci. Rep.2014410.1038/srep06035
  • ZhangYet al.An outbreak of hand, foot, and mouth disease associated with subgenotype C4 of human enterovirus 71 in Shandong, ChinaJ. Clin. Virol.20094426210.1016/j.jcv.2009.02.002
  • AritaMTemperature-sensitive mutants of enterovirus 71 show attenuation in cynomolgus monkeysJ. Gen. Virol.200586139110.1099/vir.0.80784-0
  • BlomqvistSBruuALStenvikMHoviTCharacterization of a recombinant type 3/type 2 poliovirus isolated from a healthy vaccinee and containing a chimeric capsid protein VP1J. Gen. Virol.20038457310.1099/vir.0.18708-0
  • HarvalaHet al.Recommendations for enterovirus diagnostics and characterisation within and beyond EuropeJ. Clin. Virol.20181011110.1016/j.jcv.2018.01.008
  • GaoGFFrom “A”IV to “Z”IKV: attacks from emerging and re-emerging pathogensCELL2018172115710.1016/j.cell.2018.02.025
  • XuWZhangYIsolation and characterization of vaccine-derived polioviruses, relevance for the global polio eradication initiativeMethods Mol. Biol.2016138721310.1007/978-1-4939-3292-4_10
  • YangC.-F.NaguibT.YangS.-J.NasrE.JorbaJ.AhmedN.CampagnoliR.van der AvoortH.ShimizuH.YoneyamaT.MiyamuraT.PallanschM.KewO.Circulation of Endemic Type 2 Vaccine-Derived Poliovirus in Egypt from 1983 to 1993Journal of Virology200377158366837710.1128/JVI.77.15.8366-8377.2003
  • KumarSStecherGTamuraKMEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasetsMol. Biol. Evol.201633187010.1093/molbev/msw054
  • Hall, T. A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids. Symp. Ser. 41, 9598(1999).
  • ChangFet al.Complete genome analysis of a PVYN-Wi recombinant isolate from Solanum tuberosum in ChinaPotato. Res.20155837710.1007/s11540-015-9307-3
  • DarribaDTaboadaGLDoalloRPosadaDjModelTest 2: more models, new heuristics and parallel computingNat. Methods2012977210.1038/nmeth.2109
  • StamatakisARAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogeniesBioinformatics201430131210.1093/bioinformatics/btu033
  • Martin, D. P., Murrell, B., Golden, M., Khoosal, A. & Muhire, B. RDP4: detection and analysis of recombination patterns in virus genomes. Virus Evol.1, v3 (2015).
  • SalminenMOCarrJKBurkeDSMcCutchanFEIdentification of breakpoints in intergenotypic recombinants of HIV type 1 by bootscanningAIDS Res. Hum. Retrovir.199511142310.1089/aid.1995.11.1423
  • RobertsonDLHahnBHSharpPMRecombination in AIDS virusesJ. Mol. Evol.19954024910.1007/BF00163230
  • ZhangYet al.Natural type 3/type 2 intertypic vaccine-related poliovirus recombinants with the first crossover sites within the VP1 capsid coding regionPLoS One20105e1530010.1371/journal.pone.0015300

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.