Estimation of Genetic Diversity within and among Populations of Oncorhynchus mykiss in a Coastal River Experiencing Spatially Variable Hatchery Augmentation

REFERENCES

• Aguilar , A. and Garza , J. C. 2006 . A comparison of variability and population structure for major histocompatibility complex and microsatellite loci in California coastal steelhead (Oncorhynchus mykiss Walbaum) . Molecular Ecology , 15 : 923 – 937 .
   PubMed Web of Science ®Google Scholar
• Allendorf , F. W. and Phelps , S. R. 1981 . Use of allelic frequencies to describe population structure . Canadian Journal of Fisheries and Aquatic Sciences , 38 : 1507 – 1514 .
   Web of Science ®Google Scholar
• Araki , H. , Berejikian , B. A. , Ford , M. J. and Blouin , M. S. 2008 . Fitness of hatchery-reared salmonids in the wild . Evolutionary Applications , 1 : 342 – 355 .
   PubMed Web of Science ®Google Scholar
• Beacham , T. D. , Le , K. D. and Candy , J. R. 2004 . Population structure and stock identification of steelhead trout (Oncorhynchus mykiss) in British Columbia and the Columbia River based on microsatellite variation . Environmental Biology of Fishes , 69 : 95 – 109 .
   Web of Science ®Google Scholar
• Beacham , T. D. , Pollard , S. and Le , K. D. 2000 . Microsatellite DNA population structure and stock identification of steelhead trout (Oncorhynchus mykiss) in the Nass and Skeena rivers in northern British Columbia . Marine Biotechnology , 2 : 587 – 600 .
   PubMed Web of Science ®Google Scholar
• Brannon , E. L. , Amend , D. F. , Cronin , M. A. , Lannan , J. E. , LaPatra , S. , McNeil , W. J. , Noble , R. E. , Smith , C. E. , Talbot , A. J. , Wedenmeyer , G. A. and Westers , H. 2004 . The controversy about salmon hatcheries . Fisheries , 29 ( 9 ) : 12 – 31 .
   Web of Science ®Google Scholar
• Carlsson , J. and Nilsson , J. 2000 . Population genetic structure of brown trout (Salmo trutta L.) within a northern boreal forest stream . Hereditas , 132 : 173 – 181 .
   PubMed Web of Science ®Google Scholar
• Carlsson , J. , Olsen , K. H. , Nilsson , J. , Øverli , Ø. and Stabell , O. B. 1999 . Microsatellites reveal fine-scale genetic structure in stream-living brown trout . Journal of Fish Biology , 55 : 1290 – 1303 .
   Web of Science ®Google Scholar
• Chilcote , M. W. 2003 . Relationship between the natural productivity and the frequency of wild fish in mixed spawning populations of wild and hatchery steelhead (Oncorhynchus mykiss) . Canadian Journal of Fisheries and Aquatic Sciences , 60 : 1057 – 1067 .
   Web of Science ®Google Scholar
• Eldridge , W. H. and Naish , K. A. 2007 . Long-term effects of translocation and release numbers on fine-scale population structure among coho salmon (Oncorhynchus kisutch) . Molecular Ecology , 16 : 2407 – 2421 .
   PubMed Web of Science ®Google Scholar
• Ford , M. J. 2002 . Selection in captivity during supportive breeding may reduce fitness in the wild . Conservation Biology , 16 : 815 – 825 .
   Web of Science ®Google Scholar
• Goudet , J. 1995 . FSTAT version 1.2: a computer program to calculate F-statistics . Journal of Heredity , 86 : 485 – 486 .
   Web of Science ®Google Scholar
• Goudet , J. 2002 . FSTAT, version 2.9.3: user manual Available: 2.unil.ch/izea/softwares/fstat.html. (January 2010)
   Google Scholar
• Hansen , M. M. , Ruzzante , D. E. , Nielsen , E. E. , Bekkevold , D. and Mensberg , K. L. D. 2002 . Long-term effective populations sizes, temporal stability of genetic composition and potential for local adaptation in anadromous brown trout (Salmo trutta) populations . Molecular Ecology , 11 : 2523 – 2535 .
   PubMed Web of Science ®Google Scholar
• Heath , D. D. , Busch , C. , Kelly , J. and Atagi , D. 2002 . Temporal change in genetic structure and effective population size in steelhead trout (Oncorhynchus mykiss) . Molecular Ecology , 11 : 197 – 214 .
   PubMed Web of Science ®Google Scholar
• Heath , D. D. , Pollard , S. and Herbinger , C. M. 2001 . Genetic structure and relationships among steelhead trout (Oncorhynchus mykiss) populations in British Columbia . Hereditas , 86 : 618 – 627 .
   Web of Science ®Google Scholar
• Heggenes , J. , Beere , M. C. , Tamkee , P. and Taylor , E. B. 2006 . Genetic diversity in steelhead (Oncorhynchus mykiss) before and after conservation hatchery operation in a coastal, boreal river . Transactions of the American Fisheries Society , 135 : 251 – 267 .
   Web of Science ®Google Scholar
• Hendry , M. A. , Wenburg , J. K. , Myers , K. W. and Hendry , A. P. 2002 . Genetic and phenotypic variation through the migratory season provides evidence for multiple populations of wild steelhead in the Dean River, British Columbia . Transactions of the American Fisheries Society , 131 : 418 – 434 .
   Web of Science ®Google Scholar
• Hindar , K. , Ryman , N. and Utter , F. 1991 . Genetic effects of cultured fish on natural fish populations . Canadian Journal of Fisheries and Aquatic Sciences , 48 : 945 – 957 .
   Web of Science ®Google Scholar
• Hubisz , M. J. , Falush , D. , Stephens , M. and Pritchard , J. K. 2009 . Inferring weak population structure with the assistance of sample group information . Molecular Ecology Resources , 9 : 1322 – 1332 .
   PubMed Web of Science ®Google Scholar
• Kostow , K. E. 2004 . Differences in juvenile phenotypes and survival between hatchery stocks and a natural population provide evidence for modified selection due to captive breeding . Canadian Journal of Fisheries and Aquatic Sciences , 61 : 577 – 589 .
   Web of Science ®Google Scholar
• Kostow , K. E. , Marshal , A. R. and Phelps , S. R. 2003 . Naturally spawning hatchery steelhead contribute to smolt production, but experience low reproductive success . Transactions of the American Fisheries Society , 138 : 780 – 790 .
   Web of Science ®Google Scholar
• Kostow , K. E. and Zhou , S. J. 2006 . The effect of an introduced summer steelhead hatchery stock on the productivity of a wild winter steelhead population . Transactions of the American Fisheries Society , 135 : 825 – 841 .
   Web of Science ®Google Scholar
• Lynch , M. and O’Hely , M. 2001 . Captive breeding and the genetic fitness of natural populations . Conservation Genetics , 2 : 363 – 378 .
   Web of Science ®Google Scholar
• McPhee , M. , Utter , F. , Stanford , J. , Kuzishchin , K. , Savvaitova , K. , Pavlov , D. and Allendorf , F. 2007 . Lack of reproductive isolation between anadromous and resident Oncorhynchus mykiss from Kamchatka: relevance for conservation around the Pacific Rim . Ecology of Freshwater Fish , 16 : 539 – 547 .
   Web of Science ®Google Scholar
• Moran , M. D. 2003 . Arguments for rejecting the sequential Bonferroni in ecological studies . Oikos , 100 : 403 – 405 .
   Web of Science ®Google Scholar
• Naish , K. A. , Taylor , J. E. , Levin , P. S. , Quinn , T. P. , Winton , J. R. , Huppert , D. and Hilborn , R. 2008 . An evaluation of the effects of conservation and fishery enhancement hatcheries on wild populations of salmon . Advances in Marine Biology , 53 : 61 – 194 .
   Web of Science ®Google Scholar
• Narum , S. R. , Boe , S. , Moran , P. and Powell , M. 2006a . Small-scale genetic structure and variation in steelhead in the Grande Ronde River, Oregon, USA . Transactions of the American Fisheries Society , 135 : 979 – 986 .
   Web of Science ®Google Scholar
• Narum , S. R. , Contor , C. , Talbot , A. J. and Powell , M. S. 2004 . Genetic divergence of sympatric resident and anadromous forms of Oncorhynchus mykiss in the Walla Walla River, U.S.A . Journal of Fish Biology , 65 : 471 – 488 .
   Web of Science ®Google Scholar
• Narum , S. R. , Powell , M. S. , Evenson , R. , Sharp , B. and Talbot , A. J. 2006b . Microsatellites reveal population substructure Klickitat River native steelhead and genetic divergence from an introduced stock . North American Journal of Fisheries Management , 26 : 147 – 155 .
   Web of Science ®Google Scholar
• Nelson , T. C. , Rosenau , M. L. and Johnston , N. T. 2005 . Behavior and survival of wild and hatchery-origin winter steelhead spawners caught and released in a recreational fishery . North American Journal of Fisheries Management , 25 : 931 – 943 .
   Web of Science ®Google Scholar
• Olsen , J. , Wuttig , K. , Fleming , D. , Kretschmer , E. and Wenburg , J. 2006 . Evidence of partial anadromy and resident-form dispersal bias on a fine scale in populations of Oncorhynchus mykiss . Conservation Genetics , 7 : 613 – 619 .
   Web of Science ®Google Scholar
• Oosterhout , C. , Hutchinson , W. F. , Wills , D. P. M. and Shipley , P. 2004 . Micro-checker: software for identifying and correcting genotyping errors in microsatellite data . Molecular Ecology Notes , 4 : 535 – 538 .
   Web of Science ®Google Scholar
• Ostergaard , S. , Hansen , M. M. , Loeschcke , V. and Nielsen , E. E. 2003 . Long-term temporal changes of genetic composition in brown trout (Salmo trutta L.) populations inhabiting an unstable environment . Molecular Ecology , 12 : 3123 – 3135 .
   PubMed Web of Science ®Google Scholar
• Pritchard , J. K. , Stephens , M. and Donnelly , P. 2000 . Inference of population structure using multilocus genotype data . Genetics , 153 : 945 – 959 .
   Google Scholar
• Raymond , M. and Rousset , F. 1995 . GENEPOP, version 1.2: population genetics software for exact tests and ecumenism . Journal of Heredity , 86 : 248 – 249 .
   Web of Science ®Google Scholar
• Reisenbichler , R. R. 2005 . “ Uncertainty and research needs for supplementing wild populations of anadromous Pacific salmon ” . In Propagated fish in resource management , Edited by: Nickum , M. J. , Mazik , P. M. , Nickum , J. G. and MacKinlay , D. D. 263 – 276 . Bethesda , Maryland : American Fisheries Society, Symposium 44 .
   Google Scholar
• Reisenbichler , R. R. and Rubin , S. P. 1999 . Genetic changes from artificial propagation of Pacific salmon affect the productivity and viability of supplemented populations . ICES (International Council for the Exploration of the Sea) Journal of Marine Sciences , 56 : 459 – 466 .
   Web of Science ®Google Scholar
• Rice , W. R. 1989 . Analyzing tables of statistical tests . Evolution , 43 : 223 – 225 .
   PubMed Web of Science ®Google Scholar
• Rousset , F. 1997 . Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance . Genetics , 145 : 1219 – 1228 .
   PubMed Web of Science ®Google Scholar
• Slaney , P. A. , Berg , L. and Tautz , A. F. 1993 . Returns of hatchery steelhead relative to site of release below an upper-river hatchery . North American Journal of Fisheries Management , 13 : 558 – 566 .
   Google Scholar
• Taylor , E. B. , Gow , J. L. , Tamkee , P. and Heggenes , J. 2006 . A microsatellite DNA assessment of genetic variation in selected steelhead trout (Oncorhynchus mykiss) populations in southwestern British Columbia before and after hatchery supplementation , Vancouver : Report to University of British Columbia, Living Rivers Trust Fund, Department of Zoology .
   Google Scholar
• Taylor , E. B. , Tamkee , P. , Sterling , G. and Houghson , W. 2007 . Microsatellite DNA analysis of rainbow trout (Oncorhynchus mykiss) from western Alberta, Canada: native status and evolutionary distinctiveness of “Athabasca” trout . Conservation Genetics , 8 : 1 – 15 .
   Web of Science ®Google Scholar
• Utter , F. 1998 . Genetic problems of hatchery-reared progeny released into the wild, and how to deal with them . Bulletin of Marine Science , 62 : 623 – 640 .
   Web of Science ®Google Scholar
• Waples , R. 1998 . Separating the wheat from the chaff: patterns of genetic differentiation in high gene flow species . Journal of Heredity , 89 : 438 – 450 .
   Web of Science ®Google Scholar
• Weir , B. S. and Cockerham , C. C. 1984 . Estimating F-statistics for the analysis of population structure . Evolution , 38 : 1358 – 1370 .
   PubMed Web of Science ®Google Scholar
• Wenburg , J. K. and Bentzen , P. 2001 . Genetic and behavioral evidence for restricted gene flow among coastal cutthroat trout populations . Transactions of the American Fisheries Society , 130 : 1049 – 1069 .
   Web of Science ®Google Scholar
• Wofford , J. E. B. , Gresswell , R. E. and Banks , M. A. 2005 . Influence of barriers to movement on within-watershed genetic variation of coastal cutthroat trout . Ecological Applications , 15 : 628 – 637 .
   Web of Science ®Google Scholar
• Yamamoto , S. , Morita , K. , Koizumi , I. and Maekawa , K. 2004 . Genetic differentiation of white-spotted charr (Salvelinus leucomaensis) populations after habitat fragmentation: Spatial-temporal changes in gene frequencies . Conservation Genetics , 5 : 529 – 538 .
   Web of Science ®Google Scholar
• Youngson , A. F. , Jordan , W. C. , Verspoor , E. , McGinnity , P. , Cross , T. and Ferguson , A. 2003 . Management of salmonid fisheries in the British Isles: towards a practical approach based on population genetics . Fisheries Research , 62 : 193 – 209 .
   Web of Science ®Google Scholar