370
Views
5
CrossRef citations to date
0
Altmetric
ARTICLE

Bayesian Estimation of Age and Length at 50% Maturity

&
Pages 1012-1024 | Received 11 Dec 2012, Accepted 28 Mar 2013, Published online: 14 Jun 2013

REFERENCES

  • Ambrose , P. G. , Hammel , J. P. , Bhavnani , S. M. , Rubino , C. M. , Ellis-Grosse , E. J. and Drusano , G. L. 2012 . Frequentist and Bayesian pharmacometric-based approaches to facilitate critically needed new antibiotic development: overcoming lies, damn lies, and statistics . Antimicrobial Agents and Chemotherapy , 56 : 1466 – 1470 .
  • Austin , P. C. , Naylor , C. D. and Tu , J. V. 2001 . A comparison of a Bayesian vs. a frequentist method for profiling hospital performance . Journal of Evaluation in Clinical Practice , 7 : 35 – 45 .
  • Baker , E. A. and McComish , T. S. 1998 . Precision of ages determined from scales and opercles for Yellow Perch Perca flavescens . Journal of Great Lakes Research , 24 : 658 – 665 .
  • Bayes , T. and Price , R. 1763 . An essay towards solving a problem in the doctrine of chances. By the late Rev. Mr. Bayes, F. R. S. communicated by Mr. Price, in a letter to John Canton, A. M. F. R. S . Philosophical Transactions of the Royal Society of London , 53 : 370 – 418 .
  • Beaumont , M. A. and Rannala , B. 2004 . The Bayesian revolution in genetics . Nature Reviews Genetics , 5 : 251 – 261 .
  • Brooks , S. P. and Gelman , A. 1998 . General methods for monitoring convergence of iterative simulations . Journal of Computational and Graphical Statistics , 7 : 434 – 455 .
  • Broomhall , A. M. , Chaplin , W. J. , Elsworth , Y. , Appourchaux , T. and New , R. 2010 . A comparison of frequentist and Bayesian inference: searching for low-frequency p modes and g modes in Sun-as-a-star data . Monthly Notices of the Royal Astronomical Society , 406 : 767 – 781 .
  • Brown , M. L. and Guy , C. S. 2007 . “ Science and statistics in fisheries research ” . In Analysis and interpretation of freshwater fisheries data , Edited by: Guy , C. S. and Brown , M. L. 1 – 29 . Bethesda, Maryland : American Fisheries Society .
  • Canty , A. and Ripley , B. 2012 . boot: bootstrap R (S-plus) functions, R package version 1.3-4 , Vienna : R Foundation for Statistical Computing .
  • Chen , Y. , Jiao , Y. and Chen , L. 2003 . Developing robust frequentist and Bayesian fish stock assessment methods . Fish and Fisheries , 4 : 105 – 120 .
  • Cook , R. M. , Kunzlik , P. A. , Hislop , J. R. G. and Poulding , D. 1999 . Models of growth and maturity for North Sea cod . Journal of Northwest Atlantic Fishery Science , 25 : 91 – 99 .
  • Ellison , A. M. 1996 . An introduction to Bayesian inference for ecological research and environmental decision-making . Ecological Applications , 6 : 1036 – 1046 .
  • Gelman , A. , Carlin , J. B. , Stern , H. S. and Rubin , D. B. 2004 . Bayesian data analysis, , 2nd edition , Boca Raton , Florida : Chapman and Hall .
  • Gelman , A. and Hill , J. 2007 . Data analysis using regression and multilevel/hierarchical models , New York : Cambridge University Press .
  • Ghosh , S. K. , Mukhopadhyay , P. and Lu , J. C. 2006 . Bayesian analysis of zero-inflated regression models . Journal of Statistical Planning and Inference , 136 : 1360 – 1375 .
  • Gilks , W. R. , Richardson , S. and Spiegelhalter , D. J. , eds. 1996 . Markov chain Monte Carlo in practice , London : Chapman and Hall .
  • Greenland , S. , Schwartzbaum , J. A. and Finkle , W. D. 2000 . Problems due to small samples and sparse data in conditional logistic regression analysis . American Journal of Epidemiology , 151 : 531 – 539 .
  • He , J. X. and Bence , J. R. 2007 . Modeling annual growth variation using a hierarchical Bayesian approach and the von Bertalanffy growth function, with application to Lake Trout in southern Lake Huron . Transactions of the American Fisheries Society , 136 : 318 – 330 .
  • Headley , H. C. and Lauer , T. E. 2008 . Density-dependent growth of Yellow Perch in southern Lake Michigan, 1984–2004 . North American Journal of Fisheries Management , 28 : 57 – 69 .
  • Heino , M. , Dieckmann , U. and Godø , O. R. 2002 . Measuring probabilistic reaction norms for age and size at maturation . Evolution , 56 : 669 – 678 .
  • Ismaila , A. S. , Canty , A. and Thabane , L. 2007 . Comparison of Bayesian and frequentist approaches in modelling risk of preterm birth near the Sydney Tar Ponds, Nova Scotia, Canada. BMC Medical Research Methodology . 7 : 39 [online serial]
  • Jennings , S. , Greenstreet , S. P. R. and Reynolds , J. D. 1999 . Structural change in an exploited fish community: a consequence of differential fishing effects on species with contrasting life histories . Journal of Animal Ecology , 68 : 617 – 627 .
  • Kéry , M. 2010 . Introduction to WinBUGS for ecologists: a Bayesian approach to regression, ANOVA, mixed models and related analyses , Oxford , , UK : Elsevier .
  • Kéry , M. and Schaub , M. 2012 . Bayesian population analysis using WinBUGS: a hierarchical perspective , Oxford , , UK : Elsevier .
  • Kruschke , J. K. 2010 . Bayesian data analysis . Wiley Interdisciplinary Reviews: Cognitive Science , 1 : 658 – 676 .
  • Kruschke , J. K. 2011 . Doing Bayesian data analysis: a tutorial with R and BUGS , Burlington , Massachusetts : Elsevier .
  • Kruschke , J. K. 2013 . Bayesian estimation supersedes the t test . Journal of Experimental Psychology , 142 : 573 – 603 .
  • Lauer , T. E. and Doll , J. C. 2012 . Final project report: dynamics and models of the Yellow Perch in Indiana waters of Lake Michigan and near-shore fish community characteristics , Muncie , Indiana : Report to Indiana Department of Natural Resources, Aquatic Biology and Fisheries Center, Ball State University .
  • Law , R. 2000 . Fishing, selection, and phenotypic evolution . ICES Journal of Marine Science , 57 : 659 – 668 .
  • Law , R. and Grey , D. R. 1989 . Evolution of yields from populations with age-specific cropping . Evolutionary Ecology , 3 : 343 – 359 .
  • Lunn , D. J. , Thomas , A. , Best , N. and Spiegelhalter , D. 2000 . WinBUGS–a Bayesian modelling framework: concepts, structure, and extensibility . Statistics and Computing , 10 : 325 – 337 .
  • Mäntyniemi , S. and Romakkaniemi , A. 2002 . Bayesian mark–recapture estimation with an application to a salmonid smolt population . Canadian Journal of Fisheries and Aquatic Sciences , 59 : 1748 – 1758 .
  • Mäntyniemi , S. , Romakkaniemi , A. and Arjas , E. 2005 . Bayesian removal estimation of a population size under unequal catchability . Canadian Journal of Fisheries and Aquatic Sciences , 62 : 291 – 300 .
  • McCarthy , M. A. 2007 . Bayesian methods for ecology , New York : Cambridge University Press .
  • Moineddin , R. , Matheson , F. I. and Glazier , R. H. 2007 . A simulation study of sample size for multilevel logistic regression models. BMC Medical Research Methodology . 7 : 34 [online serial]
  • Nemes , S. , Jonasson , J. M. , Genell , A. and Steineck , G. 2009 . Bias in odds ratios by logistic regression modelling and sample size. BMC Medical Research Methodology . 9 : 56 [online serial]
  • Nielsen , A. and Lewy , P. 2002 . Comparison of the frequentist properties of Bayes and the maximum likelihood estimators in an age-structured fish stock assessment model . Canadian Journal of Fisheries and Aquatic Sciences , 59 : 136 – 143 .
  • O’Brien , L. 1999 . Factors influencing the rate of sexual maturity and the effect on spawning stock for Georges Bank and Gulf of Maine Atlantic cod Gadus morhua stocks . Journal of Northwest Atlantic Fishery Science , 25 : 179 – 203 .
  • Peduzzi , P. , Concato , J. , Kemper , E. , Holford , T. R. and Feinstein , A. R. 1996 . A simulation study of the number of events per variable in logistic regression analysis . Journal of Clinical Epidemiology , 49 : 1373 – 1379 .
  • Plummer , M. 2003 . “ JAGS: a program for analysis of Bayesian graphical models using Gibbs sampling ” . In Proceedings of the 3rd international workshop on distributed statistical computing (DSC 2003) Edited by: Hornik , K. , Leisch , F. and Zeileis , A. Paper 33Available: www.ci.tuwien.ac.at/Conferences/DSC-2003/Proceedings/. (December 2012)
  • Plummer , M. 2012 . rjags: Bayesian graphical models using MCMC, R package version 3-7 , Vienna : R Foundation for Statistical Computing . Available: CRAN.R-project.org/package=rjags. (December 2012)
  • Quinn , T. J. II and Deriso , R. B. 1999 . Quantitative fish dynamics , New York : Oxford University Press .
  • R Development Core Team . 2013 . R: a language and environment for statistical computing , Vienna : R Foundation for Statistical Computing . Available: www.R-project.org./ (December 2012)
  • Reckhow , K. H. 1990 . Bayesian inference in non-replicated ecological studies . Ecology , 71 : 2053 – 2059 .
  • Rogers , S. M. and Curry , R. A. 2004 . Genetic population structure of Brook Trout inhabiting a large river watershed . Transactions of the American Fisheries Society , 133 : 1138 – 1149 .
  • Royle , J. A. and Dorazio , R. M. 2008 . Hierarchical modeling and inference in ecology , San Diego , California : Elsevier .
  • Ruiz , P. and Laplanche , C. 2010 . A hierarchical model to estimate the abundance and biomass of salmonids by using removal sampling and biometric data from multiple locations . Canadian Journal of Fisheries and Aquatic Sciences , 67 : 2032 – 2044 .
  • Schill , D. J. , LaBar , G. W. , Mamer , E. R. J. M. and Meyer , K. A. 2010 . Sex ratio, fecundity, and models predicting length at sexual maturity of Redband Trout in Idaho desert streams . North American Journal of Fisheries Management , 30 : 1352 – 1363 .
  • Shephard , S. and Jackson , D. C. 2005 . Channel Catfish maturation in Mississippi streams . North American Journal of Fisheries Management , 25 : 1467 – 1475 .
  • Stan Development Team . 2012 . Stan: a C++ library for probability and sampling, version 1.0 . Available: mc-stan.org. (December 2012)
  • Stark , J. W. 2012 . Contrasting maturation and growth of Northern Rock Sole in the eastern Bering Sea and Gulf of Alaska for the purpose of stock management . North American Journal of Fisheries Management , 32 : 93 – 99 .
  • Su , Z. and Peterman , R. M. 2012 . Performance of a Bayesian state-space model of semelparous species for stock-recruitment data subject to measurement error . Ecological Modelling , 224 : 76 – 89 .
  • Treasurer , J. W. and Holliday , F. G. T. 1981 . Some aspects of the reproductive biology of perch Perca fluviatilis L.: a histological description of the reproductive cycle . Journal of Fish Biology , 18 : 359 – 376 .
  • Valle , D. and Berdanier , A. 2012 . Computer programming skills for environmental sciences . Bulletin of the Ecological Society of America , 93 : 373 – 389 .
  • Wang , H. Y. , Cook , H. A. , Einhouse , D. W. , Fielder , D. G. , Kayle , K. A. , Rudstam , L. G. and Höök , T. O. 2009 . Maturation schedules of Walleye populations in the Great Lakes region: comparison of maturation indices and evaluation of sampling-induced biases . North American Journal of Fisheries Management , 29 : 1540 – 1554 .
  • Wilberg , M. J. , Bence , J. R. , Eggold , B. T. , Makauskas , D. and Clapp , D. F. 2005 . Yellow Perch dynamics in southwestern Lake Michigan during 1986–2002 . North American Journal of Fisheries Management , 25 : 1130 – 1152 .

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.