Avian Predation on Juvenile Salmonids: Spatial and Temporal Analysis Based on Acoustic and Passive Integrated Transponder Tags

References

• Adkins, J. Y., D. E. Lyons, P. J. Loschl, D. D. Roby, K. Collis, A. F. Evans, and N. J. Hostetter. 2014. Demographics of piscivorous colonial waterbirds and management implications for ESA-listed salmonids on the Columbia Plateau. Northwest Science 88:344–359.
   Web of Science ®Google Scholar
• Adrean, L. J. 2011. Caspian tern (Hydroprogne caspia) foraging ecology and predation on juvenile salmonids in San Francisco Bay, California. Master’s thesis. Oregon State University, Corvallis.
   Google Scholar
• Anderson, C. D., D. D. Roby, and K. Collis. 2004. Conservation implications of the large colony of double-crested cormorants on East Sand Island, Columbia River estuary, Oregon, USA. Waterbirds 27:155–160.
   Web of Science ®Google Scholar
• Antolos, M., D. D. Roby, D. E. Lyons, K. Collis, A. F. Evans, M. Hawbecker, and B. A. Ryan. 2005. Caspian tern predation on juvenile salmonids in the mid-Columbia River. Transactions of the American Fisheries Society 134:466–480.
   Web of Science ®Google Scholar
• Beeman, J. W., and A. G. Maule. 2006. Migration depths of juvenile Chinook Salmon and steelhead relative to total dissolved gas supersaturation in a Columbia River reservoir. Transactions of the American Fisheries Society 135:584–594.
   Web of Science ®Google Scholar
• BRNW (Bird Research Northwest). 2014. Research, monitoring, and evaluation of avian predation on salmonid smolts in the lower and mid-Columbia River. Final Annual Report to the Bonneville Power Administration, Portland, Oregon; U.S. Army Corps of Engineers, Walla Walla District, Walla Walla, Washington; U.S Army Corps of Engineers, Portland District, Portland, Oregon; and Grant County Public Utility District/Priest Rapids Coordinating Committee, Ephrata, Washington.
   Google Scholar
• Burnham, K. P., D. R. Anderson, G. C. White, C. Brownie, and K. H. Pollock. 1987. Design and analysis methods for fish survival experiments based on release–recapture. American Fisheries Society, Monograph 5, Bethesda, Maryland.
   Google Scholar
• Collis, K., D. D. Roby, D. P. Craig, S. Adamany, J. Adkins, and D. E. Lyons. 2002. Colony size and diet composition of piscivorous waterbirds on the lower Columbia River: implications for losses of juvenile salmonids to avian predation. Transactions of the American Fisheries Society 131:537–550.
   Web of Science ®Google Scholar
• Collis, K., D. D. Roby, D. P. Craig, B. A. Ryan, and R. D. Ledgerwood. 2001. Colonial waterbird predation on juvenile salmonids tagged with passive integrated transponders in the Columbia River estuary: vulnerability of different salmonid species, stocks, and rearing types. Transactions of the American Fisheries Society 130:385–396.
   Web of Science ®Google Scholar
• Cuthbert, F., and L. Wires. 1999. Caspian tern (Sterna caspia). Number 403 in A. Poole and F. Gill, editors. The birds of North America. Birds of North America, Philadelphia, Pennsylvania.
   Google Scholar
• Dietrich, J. P., D. A. Boylen, D. E. Thompson, E. J. Loboschefsky, C. F. Bravo, D. K. Spangenberg, G. M. Ylitalo, T. K. Collier, D. S. Fryer, M. R. Arkoosh, and F. J. Loge. 2011. An evaluation of the influence of stock origin and out-migration history on the disease susceptibility and survival of juvenile Chinook Salmon. Journal of Aquatic Animal Health 23:35–47.
   PubMed Web of Science ®Google Scholar
• Evans, A. F., N. J. Hostetter, K. Collis, D. D. Roby, and F. J. Loge. 2014. Relationship between juvenile fish condition and survival to adulthood in steelhead (Oncorhynchus mykiss). Transactions of the American Fisheries Society 143:975–989.
   Web of Science ®Google Scholar
• Evans, A. F., N. J. Hostetter, K. Collis, D. D. Roby, D. E. Lyons, B. P. Sandford, R. D. Ledgerwood, and S. Sebring. 2012. A system-wide evaluation of avian predation on juvenile salmonids in the Columbia River basin based on recoveries of passive integrated transponder tags. Transactions of the American Fisheries Society 141:975–989.
   Web of Science ®Google Scholar
• Evans, R. M., and G. L. Knopf. 1993. American white pelican (Pelecanus erythrorhynchos). Number 57 in A. Poole and F. Gill, editors. The birds of North America. Birds of North America, Philadelphia, Pennsylvania.
   Google Scholar
• Gaston, A. J., and G. E. J. Smith. 1984. The interpretation of aerial surveys for seabirds: some effects of behavior. Canadian Wildlife Service Occasional Paper 53:1–20.
   Google Scholar
• Gelman, A., J. B. Carlin, H. S. Stern, D. B. Dunson, A. Vehtari, and D. B. Rubin. 2014. Bayesian data analysis, 3rd edition. CRC Press, Boca Raton, Florida.
   Google Scholar
• Gelman, A., and X. Meng. 1996. Model checking and model improvement. Pages 189–210 in Markov chain–Monte Carlo in practice. Chapman and Hill, London.
   Google Scholar
• Good, P. I. 2005. Permutation, parametric and bootstrap tests of hypotheses, 3rd edition. Springer-Verlag, New York.
   Google Scholar
• Hostetter, N. J., A. F. Evans, D. D. Roby, and K. Collis. 2012. Susceptibility of juvenile steelhead to avian predation: the influence of individual fish characteristics and river conditions. Transactions of the American Fisheries Society 141:1586–1599.
   Web of Science ®Google Scholar
• Hostetter, N. J., A. F. Evans, B. M. Cramer, K. Collis, D. E. Lyons, and D. D. Roby. 2015. Quantifying avian predation on fish populations: integrating predator-specific deposition probabilities in tag–recovery studies. Transactions of the American Fisheries Society 144:410–422.
   Web of Science ®Google Scholar
• Hughes, J. S., M. A. Weiland, C. M. Woodley, G. R. Ploskey, S. M. Carpenter, M. J. Hennen, E. F. Fischer, G. W. Batten III, T. J. Carlson, A. W. Cushing, Z. Deng, D. J. Etherington, T. Fu, M. J. Greiner, M. Ingraham, J. Kim, X. Li, J. Martinez, T. D. Mitchell, B. Rayamajhi, A. Seaburg, J. R. Skalski, R. L. Townsend, K. A. Wagner, and S. A. Zimmerman. 2013. Survival and passage of yearling and subyearling Chinook Salmon and steelhead at McNary Dam, 2012. Pacific Northwest National Laboratory, Final Report PNNL-22788, Richland, Washington to the U.S. Army Corps of Engineers, Walla Walla District, Walla Walla, Washington.
   Google Scholar
• Ims, R. A. 1990. On the adaptive value of reproductive synchrony as a predator swamping strategy. American Naturalist 136:485–498.
   Web of Science ®Google Scholar
• Martinson, R. D., G. M. Kovalchuk, and D. Ballinger. 2010. Monitoring of downstream salmon and steelhead at federal hydroelectric facilities. Final Report the Bonneville Power Administration, Project 87-127-01, Portland, Oregon.
   Google Scholar
• McMichael, G. A., B. M. Eppard, T. J. Carlson, B. D. Ebberts, R. S. Brown, M. Weiland, G. R. Ploskey, R. A. Harnish, and Z. D. Deng. 2010. The juvenile salmon acoustic telemetry system: a new tool. Fisheries 35:9–22.
   Web of Science ®Google Scholar
• Muir, W. D., S. G. Smith, J. G. Williams, and B. P. Sandford. 2001. Survival of juvenile salmonids passing through bypass systems, turbines, and spillways with and without flow deflectors at Snake River dams. North American Journal of Fisheries Management 21:135–146.
   Web of Science ®Google Scholar
• NOAA (National Oceanic and Atmospheric Administration). 2008. Biological opinion, Endangered Species Act section 7(a)(2) consultation; consultation remand for operation of the Federal Columbia River Power System, 11 Bureau of Reclamation projects in the Columbia basin and ESA section 10(a)(1)(A) permit for juvenile fish transportation program. National Oceanic and Atmospheric Administration, National Marine Fisheries Service, Northwest Region, Seattle.
   Google Scholar
• Osterback, A.-M., D. M. Frechette, S. A. Hayes, S. A. Shaffer, and J. W. Moore. 2014. Linking individual size and wild and hatchery ancestry to survival and predation risk of threatened steelhead (Oncorhynchus mykiss). Canadian Journal of Fisheries and Aquatic Sciences 71:1–11.
   Web of Science ®Google Scholar
• Prentice, E. F., T. A. Flagg, and C. S. McCutcheon. 1990. Feasibility of using implantable passive integrated transponder (PIT) tags in salmonids. Pages 317–322 in N. C. Parker, A. E. Giorgi, R. C. Heidinger, D. Jester Jr., E. D. Prince, and G. A. Winans, editors. Fish-marking techniques. American Fisheries Society, Symposium 7, Bethesda, Maryland.
   Google Scholar
• RDCT (R Development Core Team). 2014. R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna.
   Google Scholar
• Rieman, B. E., R. C. Beamesderfer, S. Viggs, and T. P. Poe. 1991. Estimated loss of juvenile salmonids by Northern Squawfish, Walleyes, and Smallmouth Bass in John Day Reservoir, Columbia River. Transactions of the American Fisheries Society 120:44–458.
   Web of Science ®Google Scholar
• Ruggerone, G. T. 1986. Consumption of migrating juvenile salmonids by gulls foraging below a Columbia River dam. Transactions of the American Fisheries Society 115:736–742.
   Web of Science ®Google Scholar
• Ryan, B. A., S. G. Smith, J. M. Butzerin, and J. W. Ferguson. 2003. Relative vulnerability to avian predation of juvenile salmonids tagged with passive integrated transponders in the Columbia River estuary, 1998–2000. Transactions of the American Fisheries Society 132:275–288.
   Web of Science ®Google Scholar
• Scoppettone, G. G., P. H. Rissler, D. Withers, and M. C. Fabes. 2006. Fish tag recovery from the American white pelican nesting colony on Anaho Island, Pyramid Lake, Nevada. Great Basin Birds 8:6–10.
   Google Scholar
• Sebring, S. H., M. C. Carper, R. D. Ledgerwood, B. P. Sandford, G. M. Matthews, and A. F. Evans. 2013. Relative vulnerability of PIT-tagged subyearling fall Chinook Salmon to predation by Caspian terns and double-crested cormorants in the Columbia River estuary. Transactions of the American Fisheries Society 142:1321–1334.
   Web of Science ®Google Scholar
• Skalski, J. R., R. Townsend, J. Lady, A. E. Giorgi, J. R. Stevenson, and R. D. McDonald. 2002. Estimating route-specific passage and survival probabilities at a hydroelectric project from smolt radio telemetry studies. Canadian Journal of Fisheries and Aquatic Sciences 59:1385–1393.
   Web of Science ®Google Scholar
• Skalski, J. R., R. Townsend, J. M. Lady, M. A. Timko, L. S. Sullivan, and K. Hatch. 2015. Survival of acoustic-tagged steelhead and yearling Chinook Salmon smolts through the Wanapum–Priest Rapids Project in 2014. Final Report submitted by Columbia Basin Research, University of Washington, Seattle, and Blue Leaf Environmental, Ellensburg, Washington to Grant County Public Utility District, Ephrata, Washington.
   Google Scholar
• Smith, S. G, W. D. Muir, D. M. Marsh, and J. G. Williams. 2006. Survival estimates for the passage of spring-migrating juvenile salmonids through the Snake and Columbia River dams and reservoirs, 2005. Final Report to the Bonneville Power Administration, Project 199302900, Portland, Oregon.
   Google Scholar
• Sólymos, P. 2010. dclone: data cloning in R. Available: http://www.cran.r-project.org/package=dclone. ( November 2015).
   Google Scholar
• Su, Y. S., and M. Yajima. 2012. R2jags: a package for running JAGS from R, R package version 0.03-08. Available: http://www.cran.r-project.org/package=R2jags. ( November 2015).
   Google Scholar
• Teuscher, D. M., M. T. Green, D. J Schill, A. F. Brimmer, and R. W. Hillyard. 2015. Predation by American white pelicans on Yellowstone Cutthroat Trout in the Blackfoot River drainage, Idaho. North American Journal of Fisheries Management 35:454–463.
   Web of Science ®Google Scholar
• Ward, D. L, J. H. Petersen, and J. J. Loch. 1995. Index of predation on juvenile salmonids by Northern Squawfish in the lower and middle Columbia River and in the lower Snake River. Transactions of the American Fisheries Society 124:321–334.
   Web of Science ®Google Scholar
• Weiland, M. A., C. M. Woodley, J. S. Hughes, E. F. Fischer, K. D. Hand, J. Kim, B. Rayamajhi, K. A. Wagner, S. A. Zimmerman, G. W. Batten III, T. J. Carlson, Z. Deng, D. J. Etherington, T. Fu, M. J. Greiner, J. M. Ingraham, X. Li, J. J. Martinez, J. R. Skalski, R. L. Townsend, and T. L. Lockhart. 2015. Survival and passage of yearling and subyearling Chinook Salmon and steelhead at McNary Dam, 2014. Final Report submitted by the Pacific Northwest National Laboratory, Richland, Washington to the U.S. Army Corps of Engineers, Walla Walla District, Walla Walla, Washington.
   Google Scholar
• Wiese, F. K, J. K. Parrish, C. W. Thompson, and C. Maranto. 2008. Ecosystem-based management of predator–prey relationships: piscivorous birds and salmonids. Ecological Applications 18:681–700.
   PubMed Web of Science ®Google Scholar
• Winkler, D. W. 1996. California gull (Larus californicus). Number 259 in A. Poole and F. Gill, editors. The birds of North America. Birds of North America, Philadelphia, Pennsylvania.
   Google Scholar
• Yoccoz, N. G., J. D. Nichols, and T. Boulinier. 2001. Monitoring of biological diversity in space and time. Trends in Ecology and Evolution 16:446–453.
   Web of Science ®Google Scholar
• Zorich, N. A., M. R. Jonas, and P. L. Madson. 2011. Avian predation at John Day and The Dalles dams 2010: estimating fish consumption using direct observations and diet analysis. Final Report to the U.S. Army Corps of Engineers, Portland District, Portland, Oregon.
   Google Scholar